data_4L9C
#
_model_server_result.job_id            -YwAZlbjykn02w53gHBvkw 
_model_server_result.datetime_utc      '2025-09-09 14:45:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4l9c 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
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_entry.id    4L9C 
#
_exptl.entry_id    4L9C 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4L9C 
_cell.length_a            44.22 
_cell.length_b            64.41 
_cell.length_c            89.31 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4L9C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,C,E 2 1 
B,C,E 3 1 
A,D 3 2 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_454 -x-1/2,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 -22.11 0 -44.655 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4L9C 
_atom_sites.fract_transf_matrix[1][1]    0.022614 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015526 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL B 1 401 1 GOL GOL . 
D 3 HOH A 1 401 1 HOH HOH . 
D 3 HOH A 2 402 2 HOH HOH . 
D 3 HOH A 3 403 3 HOH HOH . 
D 3 HOH A 4 404 4 HOH HOH . 
D 3 HOH A 5 405 5 HOH HOH . 
D 3 HOH A 6 406 7 HOH HOH . 
D 3 HOH A 7 407 8 HOH HOH . 
D 3 HOH A 8 408 10 HOH HOH . 
D 3 HOH A 9 409 11 HOH HOH . 
D 3 HOH A 10 410 12 HOH HOH . 
D 3 HOH A 11 411 13 HOH HOH . 
D 3 HOH A 12 412 15 HOH HOH . 
D 3 HOH A 13 413 16 HOH HOH . 
D 3 HOH A 14 414 19 HOH HOH . 
D 3 HOH A 15 415 20 HOH HOH . 
D 3 HOH A 16 416 21 HOH HOH . 
D 3 HOH A 17 417 22 HOH HOH . 
D 3 HOH A 18 418 24 HOH HOH . 
D 3 HOH A 19 419 28 HOH HOH . 
D 3 HOH A 20 420 29 HOH HOH . 
D 3 HOH A 21 421 30 HOH HOH . 
D 3 HOH A 22 422 31 HOH HOH . 
D 3 HOH A 23 423 33 HOH HOH . 
D 3 HOH A 24 424 35 HOH HOH . 
D 3 HOH A 25 425 38 HOH HOH . 
D 3 HOH A 26 426 39 HOH HOH . 
D 3 HOH A 27 427 40 HOH HOH . 
D 3 HOH A 28 428 41 HOH HOH . 
D 3 HOH A 29 429 45 HOH HOH . 
D 3 HOH A 30 430 46 HOH HOH . 
D 3 HOH A 31 431 47 HOH HOH . 
D 3 HOH A 32 432 48 HOH HOH . 
D 3 HOH A 33 433 50 HOH HOH . 
D 3 HOH A 34 434 52 HOH HOH . 
D 3 HOH A 35 435 54 HOH HOH . 
D 3 HOH A 36 436 56 HOH HOH . 
D 3 HOH A 37 437 57 HOH HOH . 
D 3 HOH A 38 438 58 HOH HOH . 
D 3 HOH A 39 439 59 HOH HOH . 
D 3 HOH A 40 440 61 HOH HOH . 
D 3 HOH A 41 441 62 HOH HOH . 
D 3 HOH A 42 442 63 HOH HOH . 
D 3 HOH A 43 443 65 HOH HOH . 
D 3 HOH A 44 444 66 HOH HOH . 
D 3 HOH A 45 445 67 HOH HOH . 
D 3 HOH A 46 446 68 HOH HOH . 
D 3 HOH A 47 447 70 HOH HOH . 
D 3 HOH A 48 448 72 HOH HOH . 
D 3 HOH A 49 449 73 HOH HOH . 
D 3 HOH A 50 450 75 HOH HOH . 
D 3 HOH A 51 451 77 HOH HOH . 
D 3 HOH A 52 452 78 HOH HOH . 
D 3 HOH A 53 453 80 HOH HOH . 
D 3 HOH A 54 454 86 HOH HOH . 
D 3 HOH A 55 455 87 HOH HOH . 
D 3 HOH A 56 456 88 HOH HOH . 
D 3 HOH A 57 457 90 HOH HOH . 
D 3 HOH A 58 458 91 HOH HOH . 
D 3 HOH A 59 459 92 HOH HOH . 
D 3 HOH A 60 460 93 HOH HOH . 
D 3 HOH A 61 461 96 HOH HOH . 
E 3 HOH B 1 501 6 HOH HOH . 
E 3 HOH B 2 502 9 HOH HOH . 
E 3 HOH B 3 503 14 HOH HOH . 
E 3 HOH B 4 504 17 HOH HOH . 
E 3 HOH B 5 505 18 HOH HOH . 
E 3 HOH B 6 506 23 HOH HOH . 
E 3 HOH B 7 507 25 HOH HOH . 
E 3 HOH B 8 508 26 HOH HOH . 
E 3 HOH B 9 509 27 HOH HOH . 
E 3 HOH B 10 510 32 HOH HOH . 
E 3 HOH B 11 511 34 HOH HOH . 
E 3 HOH B 12 512 36 HOH HOH . 
E 3 HOH B 13 513 37 HOH HOH . 
E 3 HOH B 14 514 42 HOH HOH . 
E 3 HOH B 15 515 43 HOH HOH . 
E 3 HOH B 16 516 44 HOH HOH . 
E 3 HOH B 17 517 49 HOH HOH . 
E 3 HOH B 18 518 51 HOH HOH . 
E 3 HOH B 19 519 53 HOH HOH . 
E 3 HOH B 20 520 55 HOH HOH . 
E 3 HOH B 21 521 60 HOH HOH . 
E 3 HOH B 22 522 64 HOH HOH . 
E 3 HOH B 23 523 69 HOH HOH . 
E 3 HOH B 24 524 71 HOH HOH . 
E 3 HOH B 25 525 74 HOH HOH . 
E 3 HOH B 26 526 76 HOH HOH . 
E 3 HOH B 27 527 79 HOH HOH . 
E 3 HOH B 28 528 81 HOH HOH . 
E 3 HOH B 29 529 82 HOH HOH . 
E 3 HOH B 30 530 83 HOH HOH . 
E 3 HOH B 31 531 84 HOH HOH . 
E 3 HOH B 32 532 85 HOH HOH . 
E 3 HOH B 33 533 89 HOH HOH . 
E 3 HOH B 34 534 94 HOH HOH . 
E 3 HOH B 35 535 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -1.955 8.718 -19.991 1 31.6 ? C1 GOL 401 B 1 
HETATM 2 O O1 GOL . . . C 2 -2.248 10.041 -20.38 1 37.14 ? O1 GOL 401 B 1 
HETATM 3 C C2 GOL . . . C 2 -0.443 8.512 -20.017 1 37.26 ? C2 GOL 401 B 1 
HETATM 4 O O2 GOL . . . C 2 0.162 9.575 -19.321 1 38.68 ? O2 GOL 401 B 1 
HETATM 5 C C3 GOL . . . C 2 -0.038 7.187 -19.377 1 32.87 ? C3 GOL 401 B 1 
HETATM 6 O O3 GOL . . . C 2 1.191 6.735 -19.895 1 38.23 ? O3 GOL 401 B 1 
HETATM 7 H H11 GOL . . . C 2 -2.336 8.535 -18.986 1 37.92 ? H11 GOL 401 B 1 
HETATM 8 H H12 GOL . . . C 2 -2.436 8.016 -20.672 1 37.92 ? H12 GOL 401 B 1 
HETATM 9 H HO1 GOL . . . C 2 -3.22 10.16 -20.429 1 44.56 ? HO1 GOL 401 B 1 
HETATM 10 H H2 GOL . . . C 2 -0.109 8.514 -21.055 1 44.71 ? H2 GOL 401 B 1 
HETATM 11 H HO2 GOL . . . C 2 -0.122 9.555 -18.383 1 46.42 ? HO2 GOL 401 B 1 
HETATM 12 H H31 GOL . . . C 2 0.047 7.315 -18.298 1 39.44 ? H31 GOL 401 B 1 
HETATM 13 H H32 GOL . . . C 2 -0.81 6.441 -19.566 1 39.44 ? H32 GOL 401 B 1 
HETATM 14 H HO3 GOL . . . C 2 1.303 5.784 -19.689 1 45.87 ? HO3 GOL 401 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
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