data_4L9K # _model_server_result.job_id AF27mSBELZCI0kGmdNUkjg _model_server_result.datetime_utc '2024-10-15 10:26:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4l9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4L9K # _exptl.entry_id 4L9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.367 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxy-2-[8-(hydroxymethyl)-9-oxo-9,11-dihydroindolizino[1,2-b]quinolin-7-yl]butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.97 _cell.angle_beta 87.9 _cell.angle_gamma 75.48 _cell.entry_id 4L9K _cell.length_a 58.974 _cell.length_b 59.457 _cell.length_c 96.039 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4L9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C20 H18 N2 O5' _chem_comp.formula_weight 366.367 _chem_comp.id EHF _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxy-2-[8-(hydroxymethyl)-9-oxo-9,11-dihydroindolizino[1,2-b]quinolin-7-yl]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Camptothecin, open form' # _atom_sites.entry_id 4L9K _atom_sites.fract_transf_matrix[1][1] 0.016957 _atom_sites.fract_transf_matrix[1][2] -0.00439 _atom_sites.fract_transf_matrix[1][3] 0.000532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017373 _atom_sites.fract_transf_matrix[2][3] -0.00465 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EHF A 1 601 601 EHF EHF . D 2 EHF B 1 601 602 EHF EHF . E 3 HOH A 1 701 3 HOH HOH . E 3 HOH A 2 702 4 HOH HOH . E 3 HOH A 3 703 7 HOH HOH . E 3 HOH A 4 704 8 HOH HOH . E 3 HOH A 5 705 9 HOH HOH . E 3 HOH A 6 706 10 HOH HOH . E 3 HOH A 7 707 11 HOH HOH . E 3 HOH A 8 708 12 HOH HOH . E 3 HOH A 9 709 13 HOH HOH . E 3 HOH A 10 710 14 HOH HOH . E 3 HOH A 11 711 16 HOH HOH . E 3 HOH A 12 712 17 HOH HOH . E 3 HOH A 13 713 18 HOH HOH . E 3 HOH A 14 714 19 HOH HOH . E 3 HOH A 15 715 20 HOH HOH . E 3 HOH A 16 716 21 HOH HOH . E 3 HOH A 17 717 22 HOH HOH . E 3 HOH A 18 718 23 HOH HOH . E 3 HOH A 19 719 24 HOH HOH . E 3 HOH A 20 720 25 HOH HOH . E 3 HOH A 21 721 26 HOH HOH . E 3 HOH A 22 722 27 HOH HOH . E 3 HOH A 23 723 30 HOH HOH . E 3 HOH A 24 724 31 HOH HOH . E 3 HOH A 25 725 34 HOH HOH . E 3 HOH A 26 726 35 HOH HOH . E 3 HOH A 27 727 37 HOH HOH . E 3 HOH A 28 728 38 HOH HOH . E 3 HOH A 29 729 41 HOH HOH . E 3 HOH A 30 730 44 HOH HOH . E 3 HOH A 31 731 46 HOH HOH . E 3 HOH A 32 732 48 HOH HOH . E 3 HOH A 33 733 49 HOH HOH . E 3 HOH A 34 734 52 HOH HOH . E 3 HOH A 35 735 53 HOH HOH . E 3 HOH A 36 736 54 HOH HOH . E 3 HOH A 37 737 55 HOH HOH . E 3 HOH A 38 738 57 HOH HOH . E 3 HOH A 39 739 59 HOH HOH . E 3 HOH A 40 740 64 HOH HOH . E 3 HOH A 41 741 66 HOH HOH . E 3 HOH A 42 742 67 HOH HOH . E 3 HOH A 43 743 68 HOH HOH . E 3 HOH A 44 744 72 HOH HOH . E 3 HOH A 45 745 73 HOH HOH . E 3 HOH A 46 746 76 HOH HOH . E 3 HOH A 47 747 77 HOH HOH . E 3 HOH A 48 748 78 HOH HOH . E 3 HOH A 49 749 81 HOH HOH . E 3 HOH A 50 750 82 HOH HOH . E 3 HOH A 51 751 85 HOH HOH . E 3 HOH A 52 752 86 HOH HOH . E 3 HOH A 53 753 89 HOH HOH . E 3 HOH A 54 754 90 HOH HOH . E 3 HOH A 55 755 91 HOH HOH . E 3 HOH A 56 756 92 HOH HOH . E 3 HOH A 57 757 93 HOH HOH . E 3 HOH A 58 758 94 HOH HOH . E 3 HOH A 59 759 95 HOH HOH . E 3 HOH A 60 760 96 HOH HOH . E 3 HOH A 61 761 98 HOH HOH . E 3 HOH A 62 762 99 HOH HOH . E 3 HOH A 63 763 100 HOH HOH . E 3 HOH A 64 764 103 HOH HOH . E 3 HOH A 65 765 106 HOH HOH . E 3 HOH A 66 766 107 HOH HOH . E 3 HOH A 67 767 109 HOH HOH . E 3 HOH A 68 768 110 HOH HOH . E 3 HOH A 69 769 112 HOH HOH . E 3 HOH A 70 770 117 HOH HOH . E 3 HOH A 71 771 118 HOH HOH . E 3 HOH A 72 772 119 HOH HOH . F 3 HOH B 1 701 1 HOH HOH . F 3 HOH B 2 702 2 HOH HOH . F 3 HOH B 3 703 5 HOH HOH . F 3 HOH B 4 704 6 HOH HOH . F 3 HOH B 5 705 15 HOH HOH . F 3 HOH B 6 706 28 HOH HOH . F 3 HOH B 7 707 29 HOH HOH . F 3 HOH B 8 708 32 HOH HOH . F 3 HOH B 9 709 33 HOH HOH . F 3 HOH B 10 710 36 HOH HOH . F 3 HOH B 11 711 39 HOH HOH . F 3 HOH B 12 712 40 HOH HOH . F 3 HOH B 13 713 42 HOH HOH . F 3 HOH B 14 714 43 HOH HOH . F 3 HOH B 15 715 45 HOH HOH . F 3 HOH B 16 716 47 HOH HOH . F 3 HOH B 17 717 50 HOH HOH . F 3 HOH B 18 718 51 HOH HOH . F 3 HOH B 19 719 56 HOH HOH . F 3 HOH B 20 720 58 HOH HOH . F 3 HOH B 21 721 60 HOH HOH . F 3 HOH B 22 722 61 HOH HOH . F 3 HOH B 23 723 62 HOH HOH . F 3 HOH B 24 724 63 HOH HOH . F 3 HOH B 25 725 65 HOH HOH . F 3 HOH B 26 726 69 HOH HOH . F 3 HOH B 27 727 70 HOH HOH . F 3 HOH B 28 728 71 HOH HOH . F 3 HOH B 29 729 74 HOH HOH . F 3 HOH B 30 730 75 HOH HOH . F 3 HOH B 31 731 79 HOH HOH . F 3 HOH B 32 732 80 HOH HOH . F 3 HOH B 33 733 83 HOH HOH . F 3 HOH B 34 734 84 HOH HOH . F 3 HOH B 35 735 87 HOH HOH . F 3 HOH B 36 736 88 HOH HOH . F 3 HOH B 37 737 97 HOH HOH . F 3 HOH B 38 738 101 HOH HOH . F 3 HOH B 39 739 102 HOH HOH . F 3 HOH B 40 740 104 HOH HOH . F 3 HOH B 41 741 105 HOH HOH . F 3 HOH B 42 742 108 HOH HOH . F 3 HOH B 43 743 111 HOH HOH . F 3 HOH B 44 744 113 HOH HOH . F 3 HOH B 45 745 114 HOH HOH . F 3 HOH B 46 746 115 HOH HOH . F 3 HOH B 47 747 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EHF . . . D 2 -8.762 -0.375 41.925 1 54.78 ? C1 EHF 601 B 1 HETATM 2 C C2 EHF . . . D 2 -10.016 -0.104 41.371 1 51.1 ? C2 EHF 601 B 1 HETATM 3 C C3 EHF . . . D 2 -10.573 -0.994 40.463 1 49.27 ? C3 EHF 601 B 1 HETATM 4 C C4 EHF . . . D 2 -9.85 -2.174 40.103 1 55.34 ? C4 EHF 601 B 1 HETATM 5 C C5 EHF . . . D 2 -8.607 -2.446 40.646 1 57.08 ? C5 EHF 601 B 1 HETATM 6 C C6 EHF . . . D 2 -8.049 -1.528 41.57 1 57.37 ? C6 EHF 601 B 1 HETATM 7 N N7 EHF . . . D 2 -10.401 -3.036 39.232 1 52.79 ? N7 EHF 601 B 1 HETATM 8 C C8 EHF . . . D 2 -9.783 -4.173 38.854 1 60.58 ? C8 EHF 601 B 1 HETATM 9 C C9 EHF . . . D 2 -8.518 -4.538 39.335 1 59.22 ? C9 EHF 601 B 1 HETATM 10 C C10 EHF . . . D 2 -7.892 -3.661 40.266 1 56.29 ? C10 EHF 601 B 1 HETATM 11 C C11 EHF . . . D 2 -10.186 -5.223 37.947 1 62.51 ? C11 EHF 601 B 1 HETATM 12 N N12 EHF . . . D 2 -9.253 -6.125 37.891 1 66.14 ? N12 EHF 601 B 1 HETATM 13 C C13 EHF . . . D 2 -8.21 -5.784 38.705 1 64.5 ? C13 EHF 601 B 1 HETATM 14 C C14 EHF . . . D 2 -11.385 -5.321 37.203 1 55.17 ? C14 EHF 601 B 1 HETATM 15 C C15 EHF . . . D 2 -11.601 -6.409 36.384 1 62.59 ? C15 EHF 601 B 1 HETATM 16 C C16 EHF . . . D 2 -10.556 -7.379 36.339 1 66.78 ? C16 EHF 601 B 1 HETATM 17 C C17 EHF . . . D 2 -9.411 -7.206 37.102 1 63.89 ? C17 EHF 601 B 1 HETATM 18 O O18 EHF . . . D 2 -8.422 -8.176 37.046 1 66.05 ? O18 EHF 601 B 1 HETATM 19 C C19 EHF . . . D 2 -10.621 -8.645 35.469 1 67 ? C19 EHF 601 B 1 HETATM 20 C C20 EHF . . . D 2 -12.893 -6.488 35.57 1 59.6 ? C20 EHF 601 B 1 HETATM 21 C C21 EHF . . . D 2 -12.508 -5.94 34.201 1 65.03 ? C21 EHF 601 B 1 HETATM 22 O O22 EHF . . . D 2 -12.124 -4.738 34.076 1 62.95 ? O22 EHF 601 B 1 HETATM 23 O O23 EHF . . . D 2 -12.55 -6.743 33.199 1 69.41 ? O23 EHF 601 B 1 HETATM 24 O O24 EHF . . . D 2 -13.359 -7.794 35.503 1 67.05 ? O24 EHF 601 B 1 HETATM 25 C C25 EHF . . . D 2 -14.018 -5.708 36.202 1 53.43 ? C25 EHF 601 B 1 HETATM 26 C C26 EHF . . . D 2 -14.702 -6.502 37.308 1 50.46 ? C26 EHF 601 B 1 HETATM 27 O O27 EHF . . . D 2 -9.372 -8.699 34.736 1 72.94 ? O27 EHF 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #