data_4LA3 # _model_server_result.job_id jCrJzZaeRzVn7f0507gXzA _model_server_result.datetime_utc '2024-12-26 23:45:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4la3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4LA3 # _exptl.entry_id 4LA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.213 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(dimethyl-lambda~4~-sulfanyl)propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LA3 _cell.length_a 48.573 _cell.length_b 84.023 _cell.length_c 86.271 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 125 A HIS 125 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc2 A OE1 GLU 129 A GLU 129 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 A OE2 GLU 129 A GLU 129 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc4 A NE2 HIS 163 A HIS 163 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc5 C ZN ZN . A ZN 201 1_555 D O1 DQY . A DQY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc6 C ZN ZN . A ZN 201 1_555 D O2 DQY . A DQY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc7 B NE2 HIS 125 B HIS 125 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc8 B OE1 GLU 129 B GLU 129 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc9 B NE2 HIS 163 B HIS 163 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc10 E ZN ZN . B ZN 201 1_555 F O1 DQY . B DQY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'C5 H12 O2 S' _chem_comp.formula_weight 136.213 _chem_comp.id DQY _chem_comp.mon_nstd_flag . _chem_comp.name '3-(dimethyl-lambda~4~-sulfanyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 S DQY sing 70 n n CM2 S DQY sing 71 n n S C3 DQY sing 72 n n C2 C1 DQY sing 73 n n C1 O1 DQY doub 74 n n C1 O2 DQY sing 75 n n C3 C2 DQY sing 76 n n C2 H2 DQY sing 77 n n C2 H2A DQY sing 78 n n O2 HO2 DQY sing 79 n n C3 H3 DQY sing 80 n n C3 H3A DQY sing 81 n n CM1 HM1 DQY sing 82 n n CM1 HM1A DQY sing 83 n n CM1 HM1B DQY sing 84 n n CM2 HM2 DQY sing 85 n n CM2 HM2A DQY sing 86 n n CM2 HM2B DQY sing 87 n n S HS DQY sing 88 n n # _atom_sites.entry_id 4LA3 _atom_sites.fract_transf_matrix[1][1] 0.020588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 500 ZN ZN . D 3 DQY A 1 202 370 DQY DQY . E 2 ZN B 1 201 500 ZN ZN . F 3 DQY B 1 202 370 DQY DQY . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 2 HOH HOH . G 4 HOH A 3 303 4 HOH HOH . G 4 HOH A 4 304 5 HOH HOH . G 4 HOH A 5 305 7 HOH HOH . G 4 HOH A 6 306 13 HOH HOH . G 4 HOH A 7 307 15 HOH HOH . G 4 HOH A 8 308 16 HOH HOH . G 4 HOH A 9 309 18 HOH HOH . G 4 HOH A 10 310 20 HOH HOH . G 4 HOH A 11 311 21 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 6 HOH HOH . H 4 HOH B 3 303 8 HOH HOH . H 4 HOH B 4 304 9 HOH HOH . H 4 HOH B 5 305 10 HOH HOH . H 4 HOH B 6 306 11 HOH HOH . H 4 HOH B 7 307 12 HOH HOH . H 4 HOH B 8 308 14 HOH HOH . H 4 HOH B 9 309 17 HOH HOH . H 4 HOH B 10 310 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DQY . . . D 3 12.65 -9.616 -11.763 0.63 68.26 ? S DQY 202 A 1 HETATM 2 C C1 DQY . . . D 3 9.094 -9.747 -10.677 0.63 55.05 ? C1 DQY 202 A 1 HETATM 3 O O1 DQY . . . D 3 8.877 -9.959 -11.907 0.63 46.06 ? O1 DQY 202 A 1 HETATM 4 C C2 DQY . . . D 3 10.473 -9.884 -10.129 0.63 50.07 ? C2 DQY 202 A 1 HETATM 5 O O2 DQY . . . D 3 8.159 -9.425 -9.888 0.63 56.89 ? O2 DQY 202 A 1 HETATM 6 C C3 DQY . . . D 3 11.446 -10.63 -10.967 0.63 49.64 ? C3 DQY 202 A 1 HETATM 7 C CM1 DQY . . . D 3 14.176 -10.277 -11.842 0.63 45.05 ? CM1 DQY 202 A 1 HETATM 8 C CM2 DQY . . . D 3 12.21 -8.73 -13.108 0.63 55 ? CM2 DQY 202 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 55 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #