data_4LAE # _model_server_result.job_id Xj8x_aR61zAzUZUJH5dK3g _model_server_result.datetime_utc '2025-02-18 09:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4LAE # _exptl.entry_id 4LAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LAE _cell.length_a 79.36 _cell.length_b 79.36 _cell.length_c 107.104 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 273 n n PA O2A NAP sing 274 n n PA O5B NAP sing 275 n n PA O3 NAP sing 276 n n O2A HOA2 NAP sing 277 n n O5B C5B NAP sing 278 n n C5B C4B NAP sing 279 n n C5B H51A NAP sing 280 n n C5B H52A NAP sing 281 n n C4B O4B NAP sing 282 n n C4B C3B NAP sing 283 n n C4B H4B NAP sing 284 n n O4B C1B NAP sing 285 n n C3B O3B NAP sing 286 n n C3B C2B NAP sing 287 n n C3B H3B NAP sing 288 n n O3B HO3A NAP sing 289 n n C2B O2B NAP sing 290 n n C2B C1B NAP sing 291 n n C2B H2B NAP sing 292 n n O2B P2B NAP sing 293 n n C1B N9A NAP sing 294 n n C1B H1B NAP sing 295 n n N9A C8A NAP sing 296 n y N9A C4A NAP sing 297 n y C8A N7A NAP doub 298 n y C8A H8A NAP sing 299 n n N7A C5A NAP sing 300 n y C5A C6A NAP sing 301 n y C5A C4A NAP doub 302 n y C6A N6A NAP sing 303 n n C6A N1A NAP doub 304 n y N6A H61A NAP sing 305 n n N6A H62A NAP sing 306 n n N1A C2A NAP sing 307 n y C2A N3A NAP doub 308 n y C2A H2A NAP sing 309 n n N3A C4A NAP sing 310 n y O3 PN NAP sing 311 n n PN O1N NAP doub 312 n n PN O2N NAP sing 313 n n PN O5D NAP sing 314 n n O5D C5D NAP sing 315 n n C5D C4D NAP sing 316 n n C5D H51N NAP sing 317 n n C5D H52N NAP sing 318 n n C4D O4D NAP sing 319 n n C4D C3D NAP sing 320 n n C4D H4D NAP sing 321 n n O4D C1D NAP sing 322 n n C3D O3D NAP sing 323 n n C3D C2D NAP sing 324 n n C3D H3D NAP sing 325 n n O3D HO3N NAP sing 326 n n C2D O2D NAP sing 327 n n C2D C1D NAP sing 328 n n C2D H2D NAP sing 329 n n O2D HO2N NAP sing 330 n n C1D N1N NAP sing 331 n n C1D H1D NAP sing 332 n n N1N C2N NAP sing 333 n y N1N C6N NAP doub 334 n y C2N C3N NAP doub 335 n y C2N H2N NAP sing 336 n n C3N C7N NAP sing 337 n n C3N C4N NAP sing 338 n y C7N O7N NAP doub 339 n n C7N N7N NAP sing 340 n n N7N H71N NAP sing 341 n n N7N H72N NAP sing 342 n n C4N C5N NAP doub 343 n y C4N H4N NAP sing 344 n n C5N C6N NAP sing 345 n y C5N H5N NAP sing 346 n n C6N H6N NAP sing 347 n n P2B O1X NAP doub 348 n n P2B O2X NAP sing 349 n n P2B O3X NAP sing 350 n n O2X HOP2 NAP sing 351 n n O3X HOP3 NAP sing 352 n n # _atom_sites.entry_id 4LAE _atom_sites.fract_transf_matrix[1][1] 0.012601 _atom_sites.fract_transf_matrix[1][2] 0.007275 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 201 160 NAP NAP . C 3 1VM X 1 202 159 1VM 005 . D 4 HOH X 1 301 2 HOH HOH . D 4 HOH X 2 302 3 HOH HOH . D 4 HOH X 3 303 4 HOH HOH . D 4 HOH X 4 304 5 HOH HOH . D 4 HOH X 5 305 7 HOH HOH . D 4 HOH X 6 306 8 HOH HOH . D 4 HOH X 7 307 9 HOH HOH . D 4 HOH X 8 308 10 HOH HOH . D 4 HOH X 9 309 11 HOH HOH . D 4 HOH X 10 310 12 HOH HOH . D 4 HOH X 11 311 13 HOH HOH . D 4 HOH X 12 312 14 HOH HOH . D 4 HOH X 13 313 15 HOH HOH . D 4 HOH X 14 314 16 HOH HOH . D 4 HOH X 15 315 17 HOH HOH . D 4 HOH X 16 316 18 HOH HOH . D 4 HOH X 17 317 19 HOH HOH . D 4 HOH X 18 318 20 HOH HOH . D 4 HOH X 19 319 22 HOH HOH . D 4 HOH X 20 320 23 HOH HOH . D 4 HOH X 21 321 24 HOH HOH . D 4 HOH X 22 322 25 HOH HOH . D 4 HOH X 23 323 26 HOH HOH . D 4 HOH X 24 324 27 HOH HOH . D 4 HOH X 25 325 28 HOH HOH . D 4 HOH X 26 326 29 HOH HOH . D 4 HOH X 27 327 30 HOH HOH . D 4 HOH X 28 328 31 HOH HOH . D 4 HOH X 29 329 32 HOH HOH . D 4 HOH X 30 330 33 HOH HOH . D 4 HOH X 31 331 34 HOH HOH . D 4 HOH X 32 332 35 HOH HOH . D 4 HOH X 33 333 37 HOH HOH . D 4 HOH X 34 334 38 HOH HOH . D 4 HOH X 35 335 39 HOH HOH . D 4 HOH X 36 336 40 HOH HOH . D 4 HOH X 37 337 41 HOH HOH . D 4 HOH X 38 338 42 HOH HOH . D 4 HOH X 39 339 43 HOH HOH . D 4 HOH X 40 340 44 HOH HOH . D 4 HOH X 41 341 45 HOH HOH . D 4 HOH X 42 342 46 HOH HOH . D 4 HOH X 43 343 47 HOH HOH . D 4 HOH X 44 344 48 HOH HOH . D 4 HOH X 45 345 49 HOH HOH . D 4 HOH X 46 346 50 HOH HOH . D 4 HOH X 47 347 51 HOH HOH . D 4 HOH X 48 348 52 HOH HOH . D 4 HOH X 49 349 55 HOH HOH . D 4 HOH X 50 350 56 HOH HOH . D 4 HOH X 51 351 57 HOH HOH . D 4 HOH X 52 352 58 HOH HOH . D 4 HOH X 53 353 59 HOH HOH . D 4 HOH X 54 354 63 HOH HOH . D 4 HOH X 55 355 64 HOH HOH . D 4 HOH X 56 356 65 HOH HOH . D 4 HOH X 57 357 67 HOH HOH . D 4 HOH X 58 358 68 HOH HOH . D 4 HOH X 59 359 69 HOH HOH . D 4 HOH X 60 360 70 HOH HOH . D 4 HOH X 61 361 71 HOH HOH . D 4 HOH X 62 362 72 HOH HOH . D 4 HOH X 63 363 73 HOH HOH . D 4 HOH X 64 364 75 HOH HOH . D 4 HOH X 65 365 76 HOH HOH . D 4 HOH X 66 366 77 HOH HOH . D 4 HOH X 67 367 78 HOH HOH . D 4 HOH X 68 368 79 HOH HOH . D 4 HOH X 69 369 82 HOH HOH . D 4 HOH X 70 370 84 HOH HOH . D 4 HOH X 71 371 86 HOH HOH . D 4 HOH X 72 372 87 HOH HOH . D 4 HOH X 73 373 88 HOH HOH . D 4 HOH X 74 374 90 HOH HOH . D 4 HOH X 75 375 92 HOH HOH . D 4 HOH X 76 376 95 HOH HOH . D 4 HOH X 77 377 97 HOH HOH . D 4 HOH X 78 378 100 HOH HOH . D 4 HOH X 79 379 101 HOH HOH . D 4 HOH X 80 380 102 HOH HOH . D 4 HOH X 81 381 103 HOH HOH . D 4 HOH X 82 382 107 HOH HOH . D 4 HOH X 83 383 109 HOH HOH . D 4 HOH X 84 384 112 HOH HOH . D 4 HOH X 85 385 113 HOH HOH . D 4 HOH X 86 386 114 HOH HOH . D 4 HOH X 87 387 115 HOH HOH . D 4 HOH X 88 388 116 HOH HOH . D 4 HOH X 89 389 118 HOH HOH . D 4 HOH X 90 390 119 HOH HOH . D 4 HOH X 91 391 120 HOH HOH . D 4 HOH X 92 392 121 HOH HOH . D 4 HOH X 93 393 126 HOH HOH . D 4 HOH X 94 394 128 HOH HOH . D 4 HOH X 95 395 129 HOH HOH . D 4 HOH X 96 396 130 HOH HOH . D 4 HOH X 97 397 131 HOH HOH . D 4 HOH X 98 398 132 HOH HOH . D 4 HOH X 99 399 134 HOH HOH . D 4 HOH X 100 400 135 HOH HOH . D 4 HOH X 101 401 138 HOH HOH . D 4 HOH X 102 402 139 HOH HOH . D 4 HOH X 103 403 142 HOH HOH . D 4 HOH X 104 404 144 HOH HOH . D 4 HOH X 105 405 145 HOH HOH . D 4 HOH X 106 406 147 HOH HOH . D 4 HOH X 107 407 148 HOH HOH . D 4 HOH X 108 408 149 HOH HOH . D 4 HOH X 109 409 152 HOH HOH . D 4 HOH X 110 410 153 HOH HOH . D 4 HOH X 111 411 154 HOH HOH . D 4 HOH X 112 412 155 HOH HOH . D 4 HOH X 113 413 156 HOH HOH . D 4 HOH X 114 414 157 HOH HOH . D 4 HOH X 115 415 158 HOH HOH . D 4 HOH X 116 416 159 HOH HOH . D 4 HOH X 117 417 160 HOH HOH . D 4 HOH X 118 418 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 6.556 31.704 -6.402 1 16.27 ? PA NAP 201 X 1 HETATM 2 O O1A NAP . . . B 2 6.749 30.46 -5.639 1 17.1 ? O1A NAP 201 X 1 HETATM 3 O O2A NAP . . . B 2 5.239 32.358 -6.249 1 18.02 ? O2A NAP 201 X 1 HETATM 4 O O5B NAP . . . B 2 7.696 32.773 -6.026 1 16.7 ? O5B NAP 201 X 1 HETATM 5 C C5B NAP . . . B 2 9.048 32.396 -6.153 1 16.8 ? C5B NAP 201 X 1 HETATM 6 C C4B NAP . . . B 2 9.85 33.451 -5.425 1 17.47 ? C4B NAP 201 X 1 HETATM 7 O O4B NAP . . . B 2 9.642 33.299 -4.036 1 17.93 ? O4B NAP 201 X 1 HETATM 8 C C3B NAP . . . B 2 11.348 33.327 -5.632 1 17.43 ? C3B NAP 201 X 1 HETATM 9 O O3B NAP . . . B 2 11.782 33.822 -6.889 1 16.91 ? O3B NAP 201 X 1 HETATM 10 C C2B NAP . . . B 2 11.826 34.098 -4.417 1 18.27 ? C2B NAP 201 X 1 HETATM 11 O O2B NAP . . . B 2 11.604 35.482 -4.581 1 18.03 ? O2B NAP 201 X 1 HETATM 12 C C1B NAP . . . B 2 10.831 33.642 -3.355 1 19.18 ? C1B NAP 201 X 1 HETATM 13 N N9A NAP . . . B 2 11.309 32.491 -2.572 1 19.48 ? N9A NAP 201 X 1 HETATM 14 C C8A NAP . . . B 2 10.882 31.184 -2.621 1 19.8 ? C8A NAP 201 X 1 HETATM 15 N N7A NAP . . . B 2 11.588 30.468 -1.711 1 21.02 ? N7A NAP 201 X 1 HETATM 16 C C5A NAP . . . B 2 12.458 31.307 -1.089 1 21.16 ? C5A NAP 201 X 1 HETATM 17 C C6A NAP . . . B 2 13.413 31.137 -0.084 1 23.18 ? C6A NAP 201 X 1 HETATM 18 N N6A NAP . . . B 2 13.625 29.942 0.465 1 23.21 ? N6A NAP 201 X 1 HETATM 19 N N1A NAP . . . B 2 14.154 32.229 0.34 1 24 ? N1A NAP 201 X 1 HETATM 20 C C2A NAP . . . B 2 13.952 33.48 -0.203 1 24.03 ? C2A NAP 201 X 1 HETATM 21 N N3A NAP . . . B 2 13.008 33.645 -1.197 1 22.1 ? N3A NAP 201 X 1 HETATM 22 C C4A NAP . . . B 2 12.282 32.579 -1.624 1 21.01 ? C4A NAP 201 X 1 HETATM 23 O O3 NAP . . . B 2 6.907 31.444 -7.95 1 15.85 ? O3 NAP 201 X 1 HETATM 24 P PN NAP . . . B 2 6.784 30.189 -8.944 1 16.45 ? PN NAP 201 X 1 HETATM 25 O O1N NAP . . . B 2 7.444 29.006 -8.36 1 15.68 ? O1N NAP 201 X 1 HETATM 26 O O2N NAP . . . B 2 7.208 30.651 -10.277 1 15.07 ? O2N NAP 201 X 1 HETATM 27 O O5D NAP . . . B 2 5.192 29.929 -8.956 1 15.51 ? O5D NAP 201 X 1 HETATM 28 C C5D NAP . . . B 2 4.349 30.901 -9.553 1 16.78 ? C5D NAP 201 X 1 HETATM 29 C C4D NAP . . . B 2 3.241 30.219 -10.347 1 15.66 ? C4D NAP 201 X 1 HETATM 30 O O4D NAP . . . B 2 2.386 29.563 -9.428 1 15.03 ? O4D NAP 201 X 1 HETATM 31 C C3D NAP . . . B 2 2.356 31.219 -11.096 1 15.32 ? C3D NAP 201 X 1 HETATM 32 O O3D NAP . . . B 2 2.008 30.726 -12.372 1 14.8 ? O3D NAP 201 X 1 HETATM 33 C C2D NAP . . . B 2 1.098 31.319 -10.263 1 15.44 ? C2D NAP 201 X 1 HETATM 34 O O2D NAP . . . B 2 -0.043 31.646 -11.033 1 17.01 ? O2D NAP 201 X 1 HETATM 35 C C1D NAP . . . B 2 1.046 29.896 -9.729 1 14.97 ? C1D NAP 201 X 1 HETATM 36 N N1N NAP . . . B 2 0.219 29.718 -8.528 1 13.79 ? N1N NAP 201 X 1 HETATM 37 C C2N NAP . . . B 2 -0.78 28.799 -8.594 1 14.43 ? C2N NAP 201 X 1 HETATM 38 C C3N NAP . . . B 2 -1.595 28.576 -7.498 1 13.35 ? C3N NAP 201 X 1 HETATM 39 C C7N NAP . . . B 2 -2.601 27.465 -7.566 1 14.75 ? C7N NAP 201 X 1 HETATM 40 O O7N NAP . . . B 2 -3.073 26.922 -6.383 1 17.22 ? O7N NAP 201 X 1 HETATM 41 N N7N NAP . . . B 2 -3.02 26.99 -8.743 1 14.07 ? N7N NAP 201 X 1 HETATM 42 C C4N NAP . . . B 2 -1.366 29.283 -6.306 1 14.93 ? C4N NAP 201 X 1 HETATM 43 C C5N NAP . . . B 2 -0.325 30.216 -6.251 1 14.24 ? C5N NAP 201 X 1 HETATM 44 C C6N NAP . . . B 2 0.468 30.419 -7.374 1 14.7 ? C6N NAP 201 X 1 HETATM 45 P P2B NAP . . . B 2 12.792 36.471 -5.036 1 19.06 ? P2B NAP 201 X 1 HETATM 46 O O1X NAP . . . B 2 12.225 37.869 -4.952 1 19.01 ? O1X NAP 201 X 1 HETATM 47 O O2X NAP . . . B 2 13.946 36.296 -4.068 1 20 ? O2X NAP 201 X 1 HETATM 48 O O3X NAP . . . B 2 13.192 36.134 -6.452 1 19.48 ? O3X NAP 201 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #