data_4LAF # _model_server_result.job_id USsCSwSsAANBXg1vjkzOng _model_server_result.datetime_utc '2024-11-05 01:30:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4laf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 4LAF # _exptl.entry_id 4LAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LAF _cell.length_a 188.553 _cell.length_b 188.553 _cell.length_c 61.203 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4LAF _atom_sites.fract_transf_matrix[1][1] 0.005304 _atom_sites.fract_transf_matrix[1][2] 0.003062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 400 400 FMN FMN . F 2 FMN B 1 400 400 FMN FMN . G 2 FMN C 1 400 400 FMN FMN . H 2 FMN D 1 400 400 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 2 -30.499 32.08 42.557 1 35.24 ? N1 FMN 400 C 1 HETATM 2 C C2 FMN . . . G 2 -31.606 32.866 42.531 1 34.06 ? C2 FMN 400 C 1 HETATM 3 O O2 FMN . . . G 2 -31.994 33.486 43.556 1 25.8 ? O2 FMN 400 C 1 HETATM 4 N N3 FMN . . . G 2 -32.349 33.026 41.41 1 37.64 ? N3 FMN 400 C 1 HETATM 5 C C4 FMN . . . G 2 -32.005 32.412 40.282 1 30.63 ? C4 FMN 400 C 1 HETATM 6 O O4 FMN . . . G 2 -32.648 32.595 39.258 1 32.98 ? O4 FMN 400 C 1 HETATM 7 C C4A FMN . . . G 2 -30.898 31.603 40.269 1 33.48 ? C4A FMN 400 C 1 HETATM 8 N N5 FMN . . . G 2 -30.566 30.989 39.135 1 38.33 ? N5 FMN 400 C 1 HETATM 9 C C5A FMN . . . G 2 -29.475 30.206 39.087 1 36.75 ? C5A FMN 400 C 1 HETATM 10 C C6 FMN . . . G 2 -29.148 29.578 37.892 1 31.26 ? C6 FMN 400 C 1 HETATM 11 C C7 FMN . . . G 2 -28.032 28.764 37.828 1 33.76 ? C7 FMN 400 C 1 HETATM 12 C C7M FMN . . . G 2 -27.676 28.08 36.513 1 34.75 ? C7M FMN 400 C 1 HETATM 13 C C8 FMN . . . G 2 -27.245 28.574 38.957 1 36.91 ? C8 FMN 400 C 1 HETATM 14 C C8M FMN . . . G 2 -25.995 27.675 38.886 1 38.44 ? C8M FMN 400 C 1 HETATM 15 C C9 FMN . . . G 2 -27.573 29.205 40.154 1 36.01 ? C9 FMN 400 C 1 HETATM 16 C C9A FMN . . . G 2 -28.689 30.021 40.227 1 38.48 ? C9A FMN 400 C 1 HETATM 17 N N10 FMN . . . G 2 -29.032 30.635 41.378 1 40.9 ? N10 FMN 400 C 1 HETATM 18 C C10 FMN . . . G 2 -30.131 31.44 41.421 1 34.41 ? C10 FMN 400 C 1 HETATM 19 C C1' FMN . . . G 2 -28.134 30.502 42.614 1 33.29 ? C1' FMN 400 C 1 HETATM 20 C C2' FMN . . . G 2 -28.152 29.298 43.461 1 34.22 ? C2' FMN 400 C 1 HETATM 21 O O2' FMN . . . G 2 -29.158 28.636 43.52 1 29.44 ? O2' FMN 400 C 1 HETATM 22 C C3' FMN . . . G 2 -27.081 29.142 44.509 1 36.06 ? C3' FMN 400 C 1 HETATM 23 O O3' FMN . . . G 2 -25.824 28.962 43.955 1 40.97 ? O3' FMN 400 C 1 HETATM 24 C C4' FMN . . . G 2 -27.311 27.955 45.44 1 32.24 ? C4' FMN 400 C 1 HETATM 25 O O4' FMN . . . G 2 -28.024 28.371 46.549 1 29.1 ? O4' FMN 400 C 1 HETATM 26 C C5' FMN . . . G 2 -26.046 27.277 45.971 1 31.39 ? C5' FMN 400 C 1 HETATM 27 O O5' FMN . . . G 2 -26.231 26.113 46.886 1 32.93 ? O5' FMN 400 C 1 HETATM 28 P P FMN . . . G 2 -25.241 24.922 46.81 1 28.82 ? P FMN 400 C 1 HETATM 29 O O1P FMN . . . G 2 -23.819 25.507 47.209 1 33.34 ? O1P FMN 400 C 1 HETATM 30 O O2P FMN . . . G 2 -25.563 23.858 47.924 1 21.25 ? O2P FMN 400 C 1 HETATM 31 O O3P FMN . . . G 2 -25.213 24.32 45.426 1 28.68 ? O3P FMN 400 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #