data_4LAH # _model_server_result.job_id hXCOlafk9BrMNOWH0hzDCg _model_server_result.datetime_utc '2025-02-18 09:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4LAH # _exptl.entry_id 4LAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LAH _cell.length_a 79.183 _cell.length_b 79.183 _cell.length_c 107.341 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 273 n n PA O2A NAP sing 274 n n PA O5B NAP sing 275 n n PA O3 NAP sing 276 n n O2A HOA2 NAP sing 277 n n O5B C5B NAP sing 278 n n C5B C4B NAP sing 279 n n C5B H51A NAP sing 280 n n C5B H52A NAP sing 281 n n C4B O4B NAP sing 282 n n C4B C3B NAP sing 283 n n C4B H4B NAP sing 284 n n O4B C1B NAP sing 285 n n C3B O3B NAP sing 286 n n C3B C2B NAP sing 287 n n C3B H3B NAP sing 288 n n O3B HO3A NAP sing 289 n n C2B O2B NAP sing 290 n n C2B C1B NAP sing 291 n n C2B H2B NAP sing 292 n n O2B P2B NAP sing 293 n n C1B N9A NAP sing 294 n n C1B H1B NAP sing 295 n n N9A C8A NAP sing 296 n y N9A C4A NAP sing 297 n y C8A N7A NAP doub 298 n y C8A H8A NAP sing 299 n n N7A C5A NAP sing 300 n y C5A C6A NAP sing 301 n y C5A C4A NAP doub 302 n y C6A N6A NAP sing 303 n n C6A N1A NAP doub 304 n y N6A H61A NAP sing 305 n n N6A H62A NAP sing 306 n n N1A C2A NAP sing 307 n y C2A N3A NAP doub 308 n y C2A H2A NAP sing 309 n n N3A C4A NAP sing 310 n y O3 PN NAP sing 311 n n PN O1N NAP doub 312 n n PN O2N NAP sing 313 n n PN O5D NAP sing 314 n n O5D C5D NAP sing 315 n n C5D C4D NAP sing 316 n n C5D H51N NAP sing 317 n n C5D H52N NAP sing 318 n n C4D O4D NAP sing 319 n n C4D C3D NAP sing 320 n n C4D H4D NAP sing 321 n n O4D C1D NAP sing 322 n n C3D O3D NAP sing 323 n n C3D C2D NAP sing 324 n n C3D H3D NAP sing 325 n n O3D HO3N NAP sing 326 n n C2D O2D NAP sing 327 n n C2D C1D NAP sing 328 n n C2D H2D NAP sing 329 n n O2D HO2N NAP sing 330 n n C1D N1N NAP sing 331 n n C1D H1D NAP sing 332 n n N1N C2N NAP sing 333 n y N1N C6N NAP doub 334 n y C2N C3N NAP doub 335 n y C2N H2N NAP sing 336 n n C3N C7N NAP sing 337 n n C3N C4N NAP sing 338 n y C7N O7N NAP doub 339 n n C7N N7N NAP sing 340 n n N7N H71N NAP sing 341 n n N7N H72N NAP sing 342 n n C4N C5N NAP doub 343 n y C4N H4N NAP sing 344 n n C5N C6N NAP sing 345 n y C5N H5N NAP sing 346 n n C6N H6N NAP sing 347 n n P2B O1X NAP doub 348 n n P2B O2X NAP sing 349 n n P2B O3X NAP sing 350 n n O2X HOP2 NAP sing 351 n n O3X HOP3 NAP sing 352 n n # _atom_sites.entry_id 4LAH _atom_sites.fract_transf_matrix[1][1] 0.012629 _atom_sites.fract_transf_matrix[1][2] 0.007291 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1VO X 1 201 159 1VO 080 . C 3 NAP X 1 202 160 NAP NAP . D 4 HOH X 1 301 1 HOH HOH . D 4 HOH X 2 302 2 HOH HOH . D 4 HOH X 3 303 3 HOH HOH . D 4 HOH X 4 304 4 HOH HOH . D 4 HOH X 5 305 5 HOH HOH . D 4 HOH X 6 306 7 HOH HOH . D 4 HOH X 7 307 8 HOH HOH . D 4 HOH X 8 308 9 HOH HOH . D 4 HOH X 9 309 10 HOH HOH . D 4 HOH X 10 310 11 HOH HOH . D 4 HOH X 11 311 12 HOH HOH . D 4 HOH X 12 312 13 HOH HOH . D 4 HOH X 13 313 16 HOH HOH . D 4 HOH X 14 314 17 HOH HOH . D 4 HOH X 15 315 18 HOH HOH . D 4 HOH X 16 316 19 HOH HOH . D 4 HOH X 17 317 20 HOH HOH . D 4 HOH X 18 318 21 HOH HOH . D 4 HOH X 19 319 22 HOH HOH . D 4 HOH X 20 320 23 HOH HOH . D 4 HOH X 21 321 26 HOH HOH . D 4 HOH X 22 322 27 HOH HOH . D 4 HOH X 23 323 28 HOH HOH . D 4 HOH X 24 324 29 HOH HOH . D 4 HOH X 25 325 30 HOH HOH . D 4 HOH X 26 326 31 HOH HOH . D 4 HOH X 27 327 32 HOH HOH . D 4 HOH X 28 328 33 HOH HOH . D 4 HOH X 29 329 34 HOH HOH . D 4 HOH X 30 330 35 HOH HOH . D 4 HOH X 31 331 36 HOH HOH . D 4 HOH X 32 332 38 HOH HOH . D 4 HOH X 33 333 39 HOH HOH . D 4 HOH X 34 334 40 HOH HOH . D 4 HOH X 35 335 41 HOH HOH . D 4 HOH X 36 336 42 HOH HOH . D 4 HOH X 37 337 43 HOH HOH . D 4 HOH X 38 338 44 HOH HOH . D 4 HOH X 39 339 45 HOH HOH . D 4 HOH X 40 340 46 HOH HOH . D 4 HOH X 41 341 48 HOH HOH . D 4 HOH X 42 342 49 HOH HOH . D 4 HOH X 43 343 51 HOH HOH . D 4 HOH X 44 344 52 HOH HOH . D 4 HOH X 45 345 53 HOH HOH . D 4 HOH X 46 346 54 HOH HOH . D 4 HOH X 47 347 57 HOH HOH . D 4 HOH X 48 348 59 HOH HOH . D 4 HOH X 49 349 60 HOH HOH . D 4 HOH X 50 350 62 HOH HOH . D 4 HOH X 51 351 65 HOH HOH . D 4 HOH X 52 352 69 HOH HOH . D 4 HOH X 53 353 72 HOH HOH . D 4 HOH X 54 354 73 HOH HOH . D 4 HOH X 55 355 74 HOH HOH . D 4 HOH X 56 356 75 HOH HOH . D 4 HOH X 57 357 76 HOH HOH . D 4 HOH X 58 358 77 HOH HOH . D 4 HOH X 59 359 78 HOH HOH . D 4 HOH X 60 360 79 HOH HOH . D 4 HOH X 61 361 80 HOH HOH . D 4 HOH X 62 362 81 HOH HOH . D 4 HOH X 63 363 82 HOH HOH . D 4 HOH X 64 364 84 HOH HOH . D 4 HOH X 65 365 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 6.61 31.606 -6.391 1 29.13 ? PA NAP 202 X 1 HETATM 2 O O1A NAP . . . C 3 6.744 30.346 -5.624 1 28.76 ? O1A NAP 202 X 1 HETATM 3 O O2A NAP . . . C 3 5.298 32.266 -6.228 1 29.2 ? O2A NAP 202 X 1 HETATM 4 O O5B NAP . . . C 3 7.75 32.625 -5.939 1 30.42 ? O5B NAP 202 X 1 HETATM 5 C C5B NAP . . . C 3 9.076 32.429 -6.356 1 30.1 ? C5B NAP 202 X 1 HETATM 6 C C4B NAP . . . C 3 9.884 33.382 -5.507 1 31.52 ? C4B NAP 202 X 1 HETATM 7 O O4B NAP . . . C 3 9.653 33.139 -4.131 1 32.04 ? O4B NAP 202 X 1 HETATM 8 C C3B NAP . . . C 3 11.38 33.241 -5.673 1 32.26 ? C3B NAP 202 X 1 HETATM 9 O O3B NAP . . . C 3 11.833 33.82 -6.877 1 32.72 ? O3B NAP 202 X 1 HETATM 10 C C2B NAP . . . C 3 11.825 33.97 -4.425 1 32.73 ? C2B NAP 202 X 1 HETATM 11 O O2B NAP . . . C 3 11.604 35.351 -4.574 1 31.94 ? O2B NAP 202 X 1 HETATM 12 C C1B NAP . . . C 3 10.808 33.503 -3.398 1 32.53 ? C1B NAP 202 X 1 HETATM 13 N N9A NAP . . . C 3 11.322 32.383 -2.587 1 32.69 ? N9A NAP 202 X 1 HETATM 14 C C8A NAP . . . C 3 10.921 31.069 -2.636 1 31.95 ? C8A NAP 202 X 1 HETATM 15 N N7A NAP . . . C 3 11.636 30.363 -1.727 1 32.45 ? N7A NAP 202 X 1 HETATM 16 C C5A NAP . . . C 3 12.488 31.214 -1.1 1 33.62 ? C5A NAP 202 X 1 HETATM 17 C C6A NAP . . . C 3 13.432 31.028 -0.092 1 34.59 ? C6A NAP 202 X 1 HETATM 18 N N6A NAP . . . C 3 13.616 29.818 0.427 1 34.5 ? N6A NAP 202 X 1 HETATM 19 N N1A NAP . . . C 3 14.171 32.107 0.366 1 35.69 ? N1A NAP 202 X 1 HETATM 20 C C2A NAP . . . C 3 13.97 33.367 -0.172 1 35.85 ? C2A NAP 202 X 1 HETATM 21 N N3A NAP . . . C 3 13.027 33.543 -1.172 1 35.28 ? N3A NAP 202 X 1 HETATM 22 C C4A NAP . . . C 3 12.298 32.487 -1.625 1 33.68 ? C4A NAP 202 X 1 HETATM 23 O O3 NAP . . . C 3 6.974 31.371 -7.943 1 29.59 ? O3 NAP 202 X 1 HETATM 24 P PN NAP . . . C 3 6.816 30.121 -8.931 1 28.24 ? PN NAP 202 X 1 HETATM 25 O O1N NAP . . . C 3 7.462 28.94 -8.32 1 27.71 ? O1N NAP 202 X 1 HETATM 26 O O2N NAP . . . C 3 7.263 30.566 -10.268 1 29.91 ? O2N NAP 202 X 1 HETATM 27 O O5D NAP . . . C 3 5.221 29.888 -8.944 1 27.71 ? O5D NAP 202 X 1 HETATM 28 C C5D NAP . . . C 3 4.369 30.849 -9.533 1 27.28 ? C5D NAP 202 X 1 HETATM 29 C C4D NAP . . . C 3 3.292 30.149 -10.359 1 26.14 ? C4D NAP 202 X 1 HETATM 30 O O4D NAP . . . C 3 2.415 29.459 -9.486 1 25.63 ? O4D NAP 202 X 1 HETATM 31 C C3D NAP . . . C 3 2.432 31.14 -11.131 1 25.91 ? C3D NAP 202 X 1 HETATM 32 O O3D NAP . . . C 3 2.128 30.601 -12.404 1 25.09 ? O3D NAP 202 X 1 HETATM 33 C C2D NAP . . . C 3 1.169 31.246 -10.309 1 24.65 ? C2D NAP 202 X 1 HETATM 34 O O2D NAP . . . C 3 0.064 31.562 -11.119 1 25.03 ? O2D NAP 202 X 1 HETATM 35 C C1D NAP . . . C 3 1.081 29.831 -9.754 1 25.47 ? C1D NAP 202 X 1 HETATM 36 N N1N NAP . . . C 3 0.275 29.67 -8.532 1 25.64 ? N1N NAP 202 X 1 HETATM 37 C C2N NAP . . . C 3 -0.716 28.727 -8.554 1 24.79 ? C2N NAP 202 X 1 HETATM 38 C C3N NAP . . . C 3 -1.509 28.518 -7.429 1 24.78 ? C3N NAP 202 X 1 HETATM 39 C C7N NAP . . . C 3 -2.59 27.483 -7.479 1 24.55 ? C7N NAP 202 X 1 HETATM 40 O O7N NAP . . . C 3 -3.141 27.02 -6.272 1 24.83 ? O7N NAP 202 X 1 HETATM 41 N N7N NAP . . . C 3 -2.995 27.012 -8.665 1 23.93 ? N7N NAP 202 X 1 HETATM 42 C C4N NAP . . . C 3 -1.265 29.254 -6.268 1 25.79 ? C4N NAP 202 X 1 HETATM 43 C C5N NAP . . . C 3 -0.24 30.205 -6.251 1 25.41 ? C5N NAP 202 X 1 HETATM 44 C C6N NAP . . . C 3 0.531 30.398 -7.394 1 25.04 ? C6N NAP 202 X 1 HETATM 45 P P2B NAP . . . C 3 12.767 36.371 -4.981 1 32.53 ? P2B NAP 202 X 1 HETATM 46 O O1X NAP . . . C 3 12.177 37.763 -4.935 1 33.2 ? O1X NAP 202 X 1 HETATM 47 O O2X NAP . . . C 3 13.886 36.23 -3.975 1 31.48 ? O2X NAP 202 X 1 HETATM 48 O O3X NAP . . . C 3 13.254 36.048 -6.374 1 31.81 ? O3X NAP 202 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #