data_4LB9 # _model_server_result.job_id kto4xbMXGr1iwBHRMKCoZA _model_server_result.datetime_utc '2024-11-22 11:01:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4LB9 # _exptl.entry_id 4LB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.56 _cell.angle_gamma 90 _cell.entry_id 4LB9 _cell.length_a 172.543 _cell.length_b 38.677 _cell.length_c 99.221 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 317 n n C1 O2 MYR sing 318 n n C1 C2 MYR sing 319 n n O2 HO2 MYR sing 320 n n C2 C3 MYR sing 321 n n C2 H21 MYR sing 322 n n C2 H22 MYR sing 323 n n C3 C4 MYR sing 324 n n C3 H31 MYR sing 325 n n C3 H32 MYR sing 326 n n C4 C5 MYR sing 327 n n C4 H41 MYR sing 328 n n C4 H42 MYR sing 329 n n C5 C6 MYR sing 330 n n C5 H51 MYR sing 331 n n C5 H52 MYR sing 332 n n C6 C7 MYR sing 333 n n C6 H61 MYR sing 334 n n C6 H62 MYR sing 335 n n C7 C8 MYR sing 336 n n C7 H71 MYR sing 337 n n C7 H72 MYR sing 338 n n C8 C9 MYR sing 339 n n C8 H81 MYR sing 340 n n C8 H82 MYR sing 341 n n C9 C10 MYR sing 342 n n C9 H91 MYR sing 343 n n C9 H92 MYR sing 344 n n C10 C11 MYR sing 345 n n C10 H101 MYR sing 346 n n C10 H102 MYR sing 347 n n C11 C12 MYR sing 348 n n C11 H111 MYR sing 349 n n C11 H112 MYR sing 350 n n C12 C13 MYR sing 351 n n C12 H121 MYR sing 352 n n C12 H122 MYR sing 353 n n C13 C14 MYR sing 354 n n C13 H131 MYR sing 355 n n C13 H132 MYR sing 356 n n C14 H141 MYR sing 357 n n C14 H142 MYR sing 358 n n C14 H143 MYR sing 359 n n # _atom_sites.entry_id 4LB9 _atom_sites.fract_transf_matrix[1][1] 0.005796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001506 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 601 1002 MYR MYR . C 2 MYR A 1 602 1003 MYR MYR . D 2 MYR A 1 603 1004 MYR MYR . E 2 MYR A 1 604 1005 MYR MYR . F 3 EVP A 1 605 600 EVP EVP . G 4 HOH A 1 701 1 HOH HOH . G 4 HOH A 2 702 2 HOH HOH . G 4 HOH A 3 703 3 HOH HOH . G 4 HOH A 4 704 4 HOH HOH . G 4 HOH A 5 705 5 HOH HOH . G 4 HOH A 6 706 6 HOH HOH . G 4 HOH A 7 707 7 HOH HOH . G 4 HOH A 8 708 8 HOH HOH . G 4 HOH A 9 709 9 HOH HOH . G 4 HOH A 10 710 10 HOH HOH . G 4 HOH A 11 711 11 HOH HOH . G 4 HOH A 12 712 12 HOH HOH . G 4 HOH A 13 713 13 HOH HOH . G 4 HOH A 14 714 14 HOH HOH . G 4 HOH A 15 715 15 HOH HOH . G 4 HOH A 16 716 16 HOH HOH . G 4 HOH A 17 717 17 HOH HOH . G 4 HOH A 18 718 18 HOH HOH . G 4 HOH A 19 719 19 HOH HOH . G 4 HOH A 20 720 20 HOH HOH . G 4 HOH A 21 721 21 HOH HOH . G 4 HOH A 22 722 22 HOH HOH . G 4 HOH A 23 723 23 HOH HOH . G 4 HOH A 24 724 24 HOH HOH . G 4 HOH A 25 725 25 HOH HOH . G 4 HOH A 26 726 26 HOH HOH . G 4 HOH A 27 727 27 HOH HOH . G 4 HOH A 28 728 28 HOH HOH . G 4 HOH A 29 729 29 HOH HOH . G 4 HOH A 30 730 30 HOH HOH . G 4 HOH A 31 731 31 HOH HOH . G 4 HOH A 32 732 32 HOH HOH . G 4 HOH A 33 733 33 HOH HOH . G 4 HOH A 34 734 34 HOH HOH . G 4 HOH A 35 735 35 HOH HOH . G 4 HOH A 36 736 36 HOH HOH . G 4 HOH A 37 737 37 HOH HOH . G 4 HOH A 38 738 38 HOH HOH . G 4 HOH A 39 739 39 HOH HOH . G 4 HOH A 40 740 40 HOH HOH . G 4 HOH A 41 741 41 HOH HOH . G 4 HOH A 42 742 42 HOH HOH . G 4 HOH A 43 743 43 HOH HOH . G 4 HOH A 44 744 44 HOH HOH . G 4 HOH A 45 745 45 HOH HOH . G 4 HOH A 46 746 46 HOH HOH . G 4 HOH A 47 747 47 HOH HOH . G 4 HOH A 48 748 48 HOH HOH . G 4 HOH A 49 749 49 HOH HOH . G 4 HOH A 50 750 50 HOH HOH . G 4 HOH A 51 751 51 HOH HOH . G 4 HOH A 52 752 52 HOH HOH . G 4 HOH A 53 753 53 HOH HOH . G 4 HOH A 54 754 54 HOH HOH . G 4 HOH A 55 755 55 HOH HOH . G 4 HOH A 56 756 56 HOH HOH . G 4 HOH A 57 757 57 HOH HOH . G 4 HOH A 58 758 58 HOH HOH . G 4 HOH A 59 759 59 HOH HOH . G 4 HOH A 60 760 60 HOH HOH . G 4 HOH A 61 761 61 HOH HOH . G 4 HOH A 62 762 62 HOH HOH . G 4 HOH A 63 763 63 HOH HOH . G 4 HOH A 64 764 64 HOH HOH . G 4 HOH A 65 765 65 HOH HOH . G 4 HOH A 66 766 66 HOH HOH . G 4 HOH A 67 767 67 HOH HOH . G 4 HOH A 68 768 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . B 2 41.258 11.714 16.434 1 27.48 ? C1 MYR 601 A 1 HETATM 2 O O1 MYR . . . B 2 40.365 11.076 17.03 1 25.92 ? O1 MYR 601 A 1 HETATM 3 O O2 MYR . . . B 2 40.947 12.634 15.645 1 31.54 ? O2 MYR 601 A 1 HETATM 4 C C2 MYR . . . B 2 42.702 11.368 16.66 1 23.12 ? C2 MYR 601 A 1 HETATM 5 C C3 MYR . . . B 2 43.01 11.48 18.143 1 30.61 ? C3 MYR 601 A 1 HETATM 6 C C4 MYR . . . B 2 44.429 11.003 18.422 1 32.76 ? C4 MYR 601 A 1 HETATM 7 C C5 MYR . . . B 2 44.686 10.98 19.919 1 29.46 ? C5 MYR 601 A 1 HETATM 8 C C6 MYR . . . B 2 45.609 9.829 20.292 1 31.5 ? C6 MYR 601 A 1 HETATM 9 C C7 MYR . . . B 2 44.894 8.873 21.24 1 22.92 ? C7 MYR 601 A 1 HETATM 10 C C8 MYR . . . B 2 45.821 8.482 22.384 1 22.6 ? C8 MYR 601 A 1 HETATM 11 C C9 MYR . . . B 2 47.195 8.074 21.869 1 21.83 ? C9 MYR 601 A 1 HETATM 12 C C10 MYR . . . B 2 48.173 7.866 23.022 1 26.56 ? C10 MYR 601 A 1 HETATM 13 C C11 MYR . . . B 2 47.84 6.616 23.833 1 23.62 ? C11 MYR 601 A 1 HETATM 14 C C12 MYR . . . B 2 48.952 6.304 24.832 1 27.04 ? C12 MYR 601 A 1 HETATM 15 C C13 MYR . . . B 2 48.697 5.009 25.599 1 25.51 ? C13 MYR 601 A 1 HETATM 16 C C14 MYR . . . B 2 48.667 3.797 24.676 1 24.01 ? C14 MYR 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #