data_4LBE # _model_server_result.job_id Jzmbnwsz6qwSUli8Slmpjw _model_server_result.datetime_utc '2025-03-04 23:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 4LBE # _exptl.entry_id 4LBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.254 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NONAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LBE _cell.length_a 155.938 _cell.length_b 155.938 _cell.length_c 75.814 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 C O THR 81 C THR 75 1_555 G K K . C K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc2 C O GLY 83 C GLY 77 1_555 F K K . C K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 G K K . C K 1003 1_555 K O HOH . C HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? # _chem_comp.formula 'C9 H20 O' _chem_comp.formula_weight 144.254 _chem_comp.id F09 _chem_comp.mon_nstd_flag . _chem_comp.name NONAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F09 sing 202 n n C1 H11 F09 sing 203 n n C1 H12 F09 sing 204 n n C1 H13 F09 sing 205 n n C2 C3 F09 sing 206 n n C2 H21 F09 sing 207 n n C2 H22 F09 sing 208 n n C3 C4 F09 sing 209 n n C3 H31 F09 sing 210 n n C3 H32 F09 sing 211 n n C4 C5 F09 sing 212 n n C4 H41 F09 sing 213 n n C4 H42 F09 sing 214 n n C5 C6 F09 sing 215 n n C5 H51 F09 sing 216 n n C5 H52 F09 sing 217 n n C6 C7 F09 sing 218 n n C6 H61 F09 sing 219 n n C6 H62 F09 sing 220 n n C7 C8 F09 sing 221 n n C7 H71 F09 sing 222 n n C7 H72 F09 sing 223 n n C8 C9 F09 sing 224 n n C8 H81 F09 sing 225 n n C8 H82 F09 sing 226 n n C9 OXT F09 sing 227 n n C9 H91 F09 sing 228 n n C9 H92 F09 sing 229 n n OXT HXT F09 sing 230 n n # _atom_sites.entry_id 4LBE _atom_sites.fract_transf_matrix[1][1] 0.006413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 A 1 2001 2001 F09 F09 . E 5 DGA C 1 1001 1001 DGA DGA . F 6 K C 1 1002 1 K K . G 6 K C 1 1003 2 K K . H 6 K C 1 1004 3 K K . I 7 HOH A 1 2101 5 HOH HOH . I 7 HOH A 2 2102 6 HOH HOH . I 7 HOH A 3 2103 7 HOH HOH . I 7 HOH A 4 2104 17 HOH HOH . I 7 HOH A 5 2105 22 HOH HOH . I 7 HOH A 6 2106 23 HOH HOH . I 7 HOH A 7 2107 24 HOH HOH . I 7 HOH A 8 2108 25 HOH HOH . I 7 HOH A 9 2109 26 HOH HOH . I 7 HOH A 10 2110 27 HOH HOH . I 7 HOH A 11 2111 28 HOH HOH . I 7 HOH A 12 2112 29 HOH HOH . I 7 HOH A 13 2113 32 HOH HOH . I 7 HOH A 14 2114 43 HOH HOH . I 7 HOH A 15 2115 44 HOH HOH . I 7 HOH A 16 2116 53 HOH HOH . I 7 HOH A 17 2117 59 HOH HOH . I 7 HOH A 18 2118 60 HOH HOH . I 7 HOH A 19 2119 98 HOH HOH . J 7 HOH B 1 301 8 HOH HOH . J 7 HOH B 2 302 9 HOH HOH . J 7 HOH B 3 303 11 HOH HOH . J 7 HOH B 4 304 12 HOH HOH . J 7 HOH B 5 305 13 HOH HOH . J 7 HOH B 6 306 14 HOH HOH . J 7 HOH B 7 307 15 HOH HOH . J 7 HOH B 8 308 16 HOH HOH . J 7 HOH B 9 309 35 HOH HOH . J 7 HOH B 10 310 37 HOH HOH . J 7 HOH B 11 311 38 HOH HOH . J 7 HOH B 12 312 40 HOH HOH . J 7 HOH B 13 313 41 HOH HOH . J 7 HOH B 14 314 42 HOH HOH . J 7 HOH B 15 315 48 HOH HOH . J 7 HOH B 16 316 49 HOH HOH . J 7 HOH B 17 317 50 HOH HOH . J 7 HOH B 18 318 58 HOH HOH . J 7 HOH B 19 319 61 HOH HOH . J 7 HOH B 20 320 62 HOH HOH . J 7 HOH B 21 321 63 HOH HOH . J 7 HOH B 22 322 64 HOH HOH . J 7 HOH B 23 323 65 HOH HOH . J 7 HOH B 24 324 66 HOH HOH . J 7 HOH B 25 325 68 HOH HOH . J 7 HOH B 26 326 69 HOH HOH . J 7 HOH B 27 327 70 HOH HOH . J 7 HOH B 28 328 71 HOH HOH . J 7 HOH B 29 329 72 HOH HOH . J 7 HOH B 30 330 73 HOH HOH . J 7 HOH B 31 331 74 HOH HOH . J 7 HOH B 32 332 76 HOH HOH . J 7 HOH B 33 333 82 HOH HOH . J 7 HOH B 34 334 83 HOH HOH . J 7 HOH B 35 335 84 HOH HOH . J 7 HOH B 36 336 85 HOH HOH . J 7 HOH B 37 337 87 HOH HOH . J 7 HOH B 38 338 88 HOH HOH . J 7 HOH B 39 339 89 HOH HOH . J 7 HOH B 40 340 90 HOH HOH . J 7 HOH B 41 341 91 HOH HOH . J 7 HOH B 42 342 93 HOH HOH . J 7 HOH B 43 343 94 HOH HOH . J 7 HOH B 44 344 95 HOH HOH . J 7 HOH B 45 345 96 HOH HOH . K 7 HOH C 1 1101 3 HOH HOH . K 7 HOH C 2 1102 4 HOH HOH . K 7 HOH C 3 1103 18 HOH HOH . K 7 HOH C 4 1104 19 HOH HOH . K 7 HOH C 5 1105 20 HOH HOH . K 7 HOH C 6 1106 31 HOH HOH . K 7 HOH C 7 1107 33 HOH HOH . K 7 HOH C 8 1108 34 HOH HOH . K 7 HOH C 9 1109 36 HOH HOH . K 7 HOH C 10 1110 39 HOH HOH . K 7 HOH C 11 1111 45 HOH HOH . K 7 HOH C 12 1112 47 HOH HOH . K 7 HOH C 13 1113 51 HOH HOH . K 7 HOH C 14 1114 52 HOH HOH . K 7 HOH C 15 1115 67 HOH HOH . K 7 HOH C 16 1116 77 HOH HOH . K 7 HOH C 17 1117 80 HOH HOH . K 7 HOH C 18 1118 81 HOH HOH . K 7 HOH C 19 1119 97 HOH HOH . K 7 HOH C 20 1120 99 HOH HOH . K 7 HOH C 21 1121 100 HOH HOH . K 7 HOH C 22 1122 101 HOH HOH . K 7 HOH C 23 1123 102 HOH HOH . K 7 HOH C 24 1124 103 HOH HOH . K 7 HOH C 25 1125 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F09 . . . D 4 1.352 -22.341 -69.908 1 60.2 ? C1 F09 2001 A 1 HETATM 2 C C2 F09 . . . D 4 0.697 -23.543 -69.283 1 71.13 ? C2 F09 2001 A 1 HETATM 3 C C3 F09 . . . D 4 0.801 -23.539 -67.775 1 77.52 ? C3 F09 2001 A 1 HETATM 4 C C4 F09 . . . D 4 -0.072 -24.572 -67.103 1 70.11 ? C4 F09 2001 A 1 HETATM 5 C C5 F09 . . . D 4 -0.471 -24.187 -65.705 1 61.67 ? C5 F09 2001 A 1 HETATM 6 C C6 F09 . . . D 4 0.219 -25.088 -64.732 1 66.22 ? C6 F09 2001 A 1 HETATM 7 C C7 F09 . . . D 4 -0.503 -25.239 -63.43 1 68.42 ? C7 F09 2001 A 1 HETATM 8 C C8 F09 . . . D 4 0.142 -26.287 -62.563 1 74.91 ? C8 F09 2001 A 1 HETATM 9 C C9 F09 . . . D 4 1.432 -25.84 -61.94 1 81.23 ? C9 F09 2001 A 1 HETATM 10 O OXT F09 . . . D 4 1.52 -26.223 -60.601 1 84.01 ? OXT F09 2001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #