data_4LBQ # _model_server_result.job_id xVx_5frTyobXG6RSfPQK1g _model_server_result.datetime_utc '2024-11-07 05:41:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 4LBQ # _exptl.entry_id 4LBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.71 _cell.angle_gamma 90 _cell.entry_id 4LBQ _cell.length_a 110.04 _cell.length_b 38.2 _cell.length_c 130.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H,I,L 1 1 B,C,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 17 B CYS 17 1_555 B SG CYS 89 B CYS 89 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 C SG CYS 17 C CYS 17 1_555 C SG CYS 89 C CYS 89 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C VAL 88 A VAL 88 1_555 A N CSO 89 A CSO 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSO 89 A CSO 89 1_555 A N ILE 90 A ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 D C GLU 16 D GLU 16 1_555 D N CSO 17 D CSO 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 D C CSO 17 D CSO 17 1_555 D N LEU 18 D LEU 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 D C LYS 130 D LYS 130 1_555 D N CSO 131 D CSO 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 D C CSO 131 D CSO 131 1_555 D N VAL 132 D VAL 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 4LBQ _atom_sites.fract_transf_matrix[1][1] 0.009088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 201 3 GOL GOL . F 4 GOL B 1 201 4 GOL GOL . G 4 GOL C 1 201 1 GOL GOL . H 4 GOL D 1 201 2 GOL GOL . I 5 HOH A 1 301 2 HOH HOH . I 5 HOH A 2 302 6 HOH HOH . I 5 HOH A 3 303 11 HOH HOH . I 5 HOH A 4 304 16 HOH HOH . I 5 HOH A 5 305 24 HOH HOH . I 5 HOH A 6 306 25 HOH HOH . I 5 HOH A 7 307 26 HOH HOH . I 5 HOH A 8 308 27 HOH HOH . I 5 HOH A 9 309 30 HOH HOH . I 5 HOH A 10 310 32 HOH HOH . I 5 HOH A 11 311 37 HOH HOH . I 5 HOH A 12 312 45 HOH HOH . I 5 HOH A 13 313 48 HOH HOH . I 5 HOH A 14 314 49 HOH HOH . I 5 HOH A 15 315 50 HOH HOH . I 5 HOH A 16 316 55 HOH HOH . I 5 HOH A 17 317 59 HOH HOH . I 5 HOH A 18 318 60 HOH HOH . I 5 HOH A 19 319 61 HOH HOH . I 5 HOH A 20 320 71 HOH HOH . I 5 HOH A 21 321 72 HOH HOH . I 5 HOH A 22 322 73 HOH HOH . I 5 HOH A 23 323 74 HOH HOH . I 5 HOH A 24 324 77 HOH HOH . I 5 HOH A 25 325 80 HOH HOH . I 5 HOH A 26 326 82 HOH HOH . I 5 HOH A 27 327 83 HOH HOH . I 5 HOH A 28 328 84 HOH HOH . I 5 HOH A 29 329 85 HOH HOH . I 5 HOH A 30 330 87 HOH HOH . I 5 HOH A 31 331 90 HOH HOH . I 5 HOH A 32 332 91 HOH HOH . I 5 HOH A 33 333 92 HOH HOH . I 5 HOH A 34 334 95 HOH HOH . I 5 HOH A 35 335 96 HOH HOH . I 5 HOH A 36 336 112 HOH HOH . I 5 HOH A 37 337 114 HOH HOH . I 5 HOH A 38 338 123 HOH HOH . I 5 HOH A 39 339 125 HOH HOH . I 5 HOH A 40 340 131 HOH HOH . I 5 HOH A 41 341 134 HOH HOH . I 5 HOH A 42 342 135 HOH HOH . I 5 HOH A 43 343 136 HOH HOH . I 5 HOH A 44 344 137 HOH HOH . I 5 HOH A 45 345 141 HOH HOH . I 5 HOH A 46 346 142 HOH HOH . I 5 HOH A 47 347 143 HOH HOH . I 5 HOH A 48 348 144 HOH HOH . I 5 HOH A 49 349 146 HOH HOH . I 5 HOH A 50 350 148 HOH HOH . I 5 HOH A 51 351 154 HOH HOH . I 5 HOH A 52 352 155 HOH HOH . I 5 HOH A 53 353 160 HOH HOH . I 5 HOH A 54 354 161 HOH HOH . I 5 HOH A 55 355 163 HOH HOH . I 5 HOH A 56 356 165 HOH HOH . I 5 HOH A 57 357 167 HOH HOH . I 5 HOH A 58 358 170 HOH HOH . I 5 HOH A 59 359 174 HOH HOH . I 5 HOH A 60 360 178 HOH HOH . I 5 HOH A 61 361 189 HOH HOH . I 5 HOH A 62 362 192 HOH HOH . I 5 HOH A 63 363 194 HOH HOH . I 5 HOH A 64 364 198 HOH HOH . I 5 HOH A 65 365 209 HOH HOH . I 5 HOH A 66 366 211 HOH HOH . I 5 HOH A 67 367 214 HOH HOH . I 5 HOH A 68 368 215 HOH HOH . I 5 HOH A 69 369 220 HOH HOH . I 5 HOH A 70 370 224 HOH HOH . I 5 HOH A 71 371 226 HOH HOH . I 5 HOH A 72 372 231 HOH HOH . I 5 HOH A 73 373 237 HOH HOH . I 5 HOH A 74 374 238 HOH HOH . I 5 HOH A 75 375 239 HOH HOH . J 5 HOH B 1 301 3 HOH HOH . J 5 HOH B 2 302 4 HOH HOH . J 5 HOH B 3 303 8 HOH HOH . J 5 HOH B 4 304 19 HOH HOH . J 5 HOH B 5 305 22 HOH HOH . J 5 HOH B 6 306 23 HOH HOH . J 5 HOH B 7 307 31 HOH HOH . J 5 HOH B 8 308 34 HOH HOH . J 5 HOH B 9 309 39 HOH HOH . J 5 HOH B 10 310 42 HOH HOH . J 5 HOH B 11 311 46 HOH HOH . J 5 HOH B 12 312 56 HOH HOH . J 5 HOH B 13 313 64 HOH HOH . J 5 HOH B 14 314 66 HOH HOH . J 5 HOH B 15 315 68 HOH HOH . J 5 HOH B 16 316 70 HOH HOH . J 5 HOH B 17 317 79 HOH HOH . J 5 HOH B 18 318 81 HOH HOH . J 5 HOH B 19 319 94 HOH HOH . J 5 HOH B 20 320 100 HOH HOH . J 5 HOH B 21 321 103 HOH HOH . J 5 HOH B 22 322 104 HOH HOH . J 5 HOH B 23 323 107 HOH HOH . J 5 HOH B 24 324 109 HOH HOH . J 5 HOH B 25 325 110 HOH HOH . J 5 HOH B 26 326 122 HOH HOH . J 5 HOH B 27 327 124 HOH HOH . J 5 HOH B 28 328 126 HOH HOH . J 5 HOH B 29 329 128 HOH HOH . J 5 HOH B 30 330 130 HOH HOH . J 5 HOH B 31 331 132 HOH HOH . J 5 HOH B 32 332 149 HOH HOH . J 5 HOH B 33 333 152 HOH HOH . J 5 HOH B 34 334 173 HOH HOH . J 5 HOH B 35 335 175 HOH HOH . J 5 HOH B 36 336 179 HOH HOH . J 5 HOH B 37 337 181 HOH HOH . J 5 HOH B 38 338 183 HOH HOH . J 5 HOH B 39 339 185 HOH HOH . J 5 HOH B 40 340 190 HOH HOH . J 5 HOH B 41 341 195 HOH HOH . J 5 HOH B 42 342 205 HOH HOH . J 5 HOH B 43 343 208 HOH HOH . J 5 HOH B 44 344 212 HOH HOH . J 5 HOH B 45 345 217 HOH HOH . J 5 HOH B 46 346 222 HOH HOH . J 5 HOH B 47 347 223 HOH HOH . J 5 HOH B 48 348 225 HOH HOH . J 5 HOH B 49 349 229 HOH HOH . J 5 HOH B 50 350 230 HOH HOH . J 5 HOH B 51 351 232 HOH HOH . J 5 HOH B 52 352 233 HOH HOH . J 5 HOH B 53 353 234 HOH HOH . J 5 HOH B 54 354 235 HOH HOH . J 5 HOH B 55 355 240 HOH HOH . J 5 HOH B 56 356 241 HOH HOH . J 5 HOH B 57 357 243 HOH HOH . K 5 HOH C 1 301 7 HOH HOH . K 5 HOH C 2 302 9 HOH HOH . K 5 HOH C 3 303 10 HOH HOH . K 5 HOH C 4 304 12 HOH HOH . K 5 HOH C 5 305 13 HOH HOH . K 5 HOH C 6 306 15 HOH HOH . K 5 HOH C 7 307 21 HOH HOH . K 5 HOH C 8 308 29 HOH HOH . K 5 HOH C 9 309 33 HOH HOH . K 5 HOH C 10 310 35 HOH HOH . K 5 HOH C 11 311 36 HOH HOH . K 5 HOH C 12 312 38 HOH HOH . K 5 HOH C 13 313 40 HOH HOH . K 5 HOH C 14 314 43 HOH HOH . K 5 HOH C 15 315 44 HOH HOH . K 5 HOH C 16 316 51 HOH HOH . K 5 HOH C 17 317 54 HOH HOH . K 5 HOH C 18 318 58 HOH HOH . K 5 HOH C 19 319 62 HOH HOH . K 5 HOH C 20 320 63 HOH HOH . K 5 HOH C 21 321 75 HOH HOH . K 5 HOH C 22 322 76 HOH HOH . K 5 HOH C 23 323 86 HOH HOH . K 5 HOH C 24 324 89 HOH HOH . K 5 HOH C 25 325 93 HOH HOH . K 5 HOH C 26 326 97 HOH HOH . K 5 HOH C 27 327 102 HOH HOH . K 5 HOH C 28 328 111 HOH HOH . K 5 HOH C 29 329 113 HOH HOH . K 5 HOH C 30 330 115 HOH HOH . K 5 HOH C 31 331 116 HOH HOH . K 5 HOH C 32 332 117 HOH HOH . K 5 HOH C 33 333 118 HOH HOH . K 5 HOH C 34 334 120 HOH HOH . K 5 HOH C 35 335 127 HOH HOH . K 5 HOH C 36 336 138 HOH HOH . K 5 HOH C 37 337 139 HOH HOH . K 5 HOH C 38 338 140 HOH HOH . K 5 HOH C 39 339 145 HOH HOH . K 5 HOH C 40 340 151 HOH HOH . K 5 HOH C 41 341 156 HOH HOH . K 5 HOH C 42 342 157 HOH HOH . K 5 HOH C 43 343 158 HOH HOH . K 5 HOH C 44 344 159 HOH HOH . K 5 HOH C 45 345 162 HOH HOH . K 5 HOH C 46 346 169 HOH HOH . K 5 HOH C 47 347 171 HOH HOH . K 5 HOH C 48 348 172 HOH HOH . K 5 HOH C 49 349 176 HOH HOH . K 5 HOH C 50 350 180 HOH HOH . K 5 HOH C 51 351 184 HOH HOH . K 5 HOH C 52 352 193 HOH HOH . K 5 HOH C 53 353 196 HOH HOH . K 5 HOH C 54 354 197 HOH HOH . K 5 HOH C 55 355 200 HOH HOH . K 5 HOH C 56 356 204 HOH HOH . K 5 HOH C 57 357 210 HOH HOH . K 5 HOH C 58 358 213 HOH HOH . K 5 HOH C 59 359 216 HOH HOH . K 5 HOH C 60 360 218 HOH HOH . K 5 HOH C 61 361 221 HOH HOH . K 5 HOH C 62 362 228 HOH HOH . L 5 HOH D 1 301 1 HOH HOH . L 5 HOH D 2 302 5 HOH HOH . L 5 HOH D 3 303 14 HOH HOH . L 5 HOH D 4 304 17 HOH HOH . L 5 HOH D 5 305 18 HOH HOH . L 5 HOH D 6 306 20 HOH HOH . L 5 HOH D 7 307 28 HOH HOH . L 5 HOH D 8 308 41 HOH HOH . L 5 HOH D 9 309 47 HOH HOH . L 5 HOH D 10 310 52 HOH HOH . L 5 HOH D 11 311 53 HOH HOH . L 5 HOH D 12 312 57 HOH HOH . L 5 HOH D 13 313 65 HOH HOH . L 5 HOH D 14 314 67 HOH HOH . L 5 HOH D 15 315 69 HOH HOH . L 5 HOH D 16 316 78 HOH HOH . L 5 HOH D 17 317 88 HOH HOH . L 5 HOH D 18 318 98 HOH HOH . L 5 HOH D 19 319 99 HOH HOH . L 5 HOH D 20 320 101 HOH HOH . L 5 HOH D 21 321 105 HOH HOH . L 5 HOH D 22 322 106 HOH HOH . L 5 HOH D 23 323 108 HOH HOH . L 5 HOH D 24 324 119 HOH HOH . L 5 HOH D 25 325 121 HOH HOH . L 5 HOH D 26 326 129 HOH HOH . L 5 HOH D 27 327 133 HOH HOH . L 5 HOH D 28 328 147 HOH HOH . L 5 HOH D 29 329 150 HOH HOH . L 5 HOH D 30 330 153 HOH HOH . L 5 HOH D 31 331 164 HOH HOH . L 5 HOH D 32 332 166 HOH HOH . L 5 HOH D 33 333 168 HOH HOH . L 5 HOH D 34 334 177 HOH HOH . L 5 HOH D 35 335 182 HOH HOH . L 5 HOH D 36 336 186 HOH HOH . L 5 HOH D 37 337 187 HOH HOH . L 5 HOH D 38 338 188 HOH HOH . L 5 HOH D 39 339 191 HOH HOH . L 5 HOH D 40 340 199 HOH HOH . L 5 HOH D 41 341 201 HOH HOH . L 5 HOH D 42 342 202 HOH HOH . L 5 HOH D 43 343 203 HOH HOH . L 5 HOH D 44 344 206 HOH HOH . L 5 HOH D 45 345 207 HOH HOH . L 5 HOH D 46 346 219 HOH HOH . L 5 HOH D 47 347 236 HOH HOH . L 5 HOH D 48 348 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -3.837 2.104 160.238 1 65.87 ? C1 GOL 201 C 1 HETATM 2 O O1 GOL . . . G 4 -3.923 2.545 161.579 1 69.58 ? O1 GOL 201 C 1 HETATM 3 C C2 GOL . . . G 4 -2.381 2.157 159.784 1 53.88 ? C2 GOL 201 C 1 HETATM 4 O O2 GOL . . . G 4 -2.152 1.142 158.834 1 55.92 ? O2 GOL 201 C 1 HETATM 5 C C3 GOL . . . G 4 -2.097 3.508 159.14 1 43.86 ? C3 GOL 201 C 1 HETATM 6 O O3 GOL . . . G 4 -0.709 3.658 158.949 1 46.96 ? O3 GOL 201 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #