data_4LCC # _model_server_result.job_id IowfLDSKmwwu6t4CbKAMNA _model_server_result.datetime_utc '2025-03-02 23:49:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4LCC # _exptl.entry_id 4LCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-deoxy-1-[6-(hydroxymethyl)-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl]-D-arabinitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LCC _cell.length_a 85.902 _cell.length_b 88.585 _cell.length_c 155.505 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 C CYS 25 1_555 A SG CYS 79 C CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 211 C CYS 211 1_555 A SG CYS 274 C CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 313 C CYS 313 1_555 A SG CYS 369 C CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 24 A CYS 22 1_555 B SG CYS 90 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 25 B CYS 23 1_555 C SG CYS 93 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 C SG CYS 148 B CYS 146 1_555 C SG CYS 213 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C12 H16 N4 O7' _chem_comp.formula_weight 328.278 _chem_comp.id 1XL _chem_comp.mon_nstd_flag . _chem_comp.name 1-deoxy-1-[6-(hydroxymethyl)-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl]-D-arabinitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 1XL doub 1 n n C2 N3 1XL sing 2 n n C2 N1 1XL sing 3 n n N3 C4 1XL sing 4 n n N1 C8A 1XL doub 5 n n C4 O4 1XL doub 6 n n C4 C4A 1XL sing 7 n n C8A C4A 1XL sing 8 n n C8A N8 1XL sing 9 n n CAK N8 1XL sing 10 n n CAK CAU 1XL sing 11 n n C4A N5 1XL doub 12 n n N8 C7 1XL sing 13 n n N5 C6 1XL sing 14 n n OAF CAU 1XL sing 15 n n OAG CAV 1XL sing 16 n n C7 C6 1XL doub 17 n n C6 CAI 1XL sing 18 n n CAU CAV 1XL sing 19 n n OAC CAI 1XL sing 20 n n CAV CAT 1XL sing 21 n n OAE CAT 1XL sing 22 n n CAT CAJ 1XL sing 23 n n CAJ OAD 1XL sing 24 n n OAD H1 1XL sing 25 n n CAJ H2 1XL sing 26 n n CAJ H3 1XL sing 27 n n CAT H4 1XL sing 28 n n OAE H5 1XL sing 29 n n CAV H6 1XL sing 30 n n OAG H7 1XL sing 31 n n CAU H8 1XL sing 32 n n OAF H9 1XL sing 33 n n CAK H10 1XL sing 34 n n CAK H11 1XL sing 35 n n C7 H12 1XL sing 36 n n N3 H14 1XL sing 37 n n CAI H15 1XL sing 38 n n CAI H16 1XL sing 39 n n OAC H17 1XL sing 40 n n # _atom_sites.entry_id 4LCC _atom_sites.fract_transf_matrix[1][1] 0.011641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 1XL C 1 401 1 1XL 1XL . E 5 SO4 C 1 402 1 SO4 SO4 . F 5 SO4 A 1 301 1 SO4 SO4 . G 5 SO4 B 1 301 1 SO4 SO4 . H 5 SO4 B 1 302 1 SO4 SO4 . I 6 HOH A 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1XL . . . D 4 -13.939 4.327 44.173 1 98.23 ? OAD 1XL 401 C 1 HETATM 2 C CAJ 1XL . . . D 4 -14.698 4.967 43.132 1 100.4 ? CAJ 1XL 401 C 1 HETATM 3 C CAT 1XL . . . D 4 -13.851 4.866 41.875 1 101.41 ? CAT 1XL 401 C 1 HETATM 4 O OAE 1XL . . . D 4 -13.849 3.464 41.602 1 105.29 ? OAE 1XL 401 C 1 HETATM 5 C CAV 1XL . . . D 4 -14.419 5.515 40.604 1 98.35 ? CAV 1XL 401 C 1 HETATM 6 O OAG 1XL . . . D 4 -13.403 5.269 39.65 1 98.73 ? OAG 1XL 401 C 1 HETATM 7 C CAU 1XL . . . D 4 -15.668 4.843 40.019 1 96.11 ? CAU 1XL 401 C 1 HETATM 8 O OAF 1XL . . . D 4 -15.407 3.491 39.646 1 95.49 ? OAF 1XL 401 C 1 HETATM 9 C CAK 1XL . . . D 4 -16.264 5.575 38.79 1 96.8 ? CAK 1XL 401 C 1 HETATM 10 N N8 1XL . . . D 4 -17.026 6.806 39.111 1 99.89 ? N8 1XL 401 C 1 HETATM 11 C C7 1XL . . . D 4 -16.657 7.941 39.849 1 97.95 ? C7 1XL 401 C 1 HETATM 12 C C8A 1XL . . . D 4 -18.269 6.71 38.623 1 103.06 ? C8A 1XL 401 C 1 HETATM 13 N N1 1XL . . . D 4 -18.594 5.561 37.893 1 107.19 ? N1 1XL 401 C 1 HETATM 14 C C2 1XL . . . D 4 -19.874 5.404 37.366 1 106.53 ? C2 1XL 401 C 1 HETATM 15 O O2 1XL . . . D 4 -20.136 4.399 36.704 1 110.15 ? O2 1XL 401 C 1 HETATM 16 N N3 1XL . . . D 4 -20.829 6.408 37.563 1 101.38 ? N3 1XL 401 C 1 HETATM 17 C C4 1XL . . . D 4 -20.494 7.561 38.288 1 95.98 ? C4 1XL 401 C 1 HETATM 18 O O4 1XL . . . D 4 -21.348 8.421 38.493 1 92.26 ? O4 1XL 401 C 1 HETATM 19 C C4A 1XL . . . D 4 -19.21 7.705 38.805 1 97.04 ? C4A 1XL 401 C 1 HETATM 20 N N5 1XL . . . D 4 -18.879 8.79 39.502 1 94.04 ? N5 1XL 401 C 1 HETATM 21 C C6 1XL . . . D 4 -17.646 8.919 40.011 1 96.51 ? C6 1XL 401 C 1 HETATM 22 C CAI 1XL . . . D 4 -17.406 10.081 40.696 1 97.69 ? CAI 1XL 401 C 1 HETATM 23 O OAC 1XL . . . D 4 -18.438 11.008 40.349 1 98.28 ? OAC 1XL 401 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #