data_4LCJ
#
_model_server_result.job_id            jAZzUds7zomhq9Qd5lMmHw 
_model_server_result.datetime_utc      '2024-11-24 13:49:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lcj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    4LCJ 
#
_exptl.entry_id    4LCJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              148.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.87 
_cell.angle_gamma         90 
_cell.entry_id            4LCJ 
_cell.length_a            86.151 
_cell.length_b            140.605 
_cell.length_c            135.126 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LCJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,Y,Z 1 1 
C,D,M,N,O,P,AA,BA 2 1 
E,F,Q,R,S,T,CA,DA 3 1 
G,H,U,V,W,X,EA,FA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
_chem_comp.formula           'C5 H8 O3 S' 
_chem_comp.formula_weight    148.18 
_chem_comp.id                KMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 KMT sing 173 n n 
C1 O2 KMT doub 174 n n 
C1 C2 KMT sing 175 n n 
O1 HO1 KMT sing 176 n n 
C2 O5 KMT doub 177 n n 
C2 C3 KMT sing 178 n n 
C3 C4 KMT sing 179 n n 
C3 H31 KMT sing 180 n n 
C3 H32 KMT sing 181 n n 
C4 S1 KMT sing 182 n n 
C4 H41 KMT sing 183 n n 
C4 H42 KMT sing 184 n n 
S1 C5 KMT sing 185 n n 
C5 H51 KMT sing 186 n n 
C5 H52 KMT sing 187 n n 
C5 H53 KMT sing 188 n n 
#
_atom_sites.entry_id                     4LCJ 
_atom_sites.fract_transf_matrix[1][1]    0.011608 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001604 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAD A 1 401 1 NAD NAD . 
J 3 KMT A 1 402 2 KMT MKB . 
K 2 NAD B 1 401 1 NAD NAD . 
L 3 KMT B 1 402 2 KMT MKB . 
M 2 NAD C 1 401 1 NAD NAD . 
N 3 KMT C 1 402 2 KMT MKB . 
O 2 NAD D 1 401 1 NAD NAD . 
P 3 KMT D 1 402 2 KMT MKB . 
Q 2 NAD E 1 401 1 NAD NAD . 
R 3 KMT E 1 402 2 KMT MKB . 
S 2 NAD F 1 401 1 NAD NAD . 
T 3 KMT F 1 402 2 KMT MKB . 
U 2 NAD G 1 401 1 NAD NAD . 
V 3 KMT G 1 402 2 KMT MKB . 
W 2 NAD H 1 401 1 NAD NAD . 
X 3 KMT H 1 402 2 KMT MKB . 
Y 4 HOH A 1 501 2 HOH HOH . 
Y 4 HOH A 2 502 3 HOH HOH . 
Y 4 HOH A 3 503 15 HOH HOH . 
Y 4 HOH A 4 504 24 HOH HOH . 
Y 4 HOH A 5 505 32 HOH HOH . 
Y 4 HOH A 6 506 35 HOH HOH . 
Y 4 HOH A 7 507 36 HOH HOH . 
Y 4 HOH A 8 508 39 HOH HOH . 
Y 4 HOH A 9 509 40 HOH HOH . 
Y 4 HOH A 10 510 42 HOH HOH . 
Y 4 HOH A 11 511 46 HOH HOH . 
Y 4 HOH A 12 512 47 HOH HOH . 
Y 4 HOH A 13 513 49 HOH HOH . 
Y 4 HOH A 14 514 50 HOH HOH . 
Y 4 HOH A 15 515 51 HOH HOH . 
Y 4 HOH A 16 516 78 HOH HOH . 
Y 4 HOH A 17 517 81 HOH HOH . 
Y 4 HOH A 18 518 87 HOH HOH . 
Y 4 HOH A 19 519 94 HOH HOH . 
Y 4 HOH A 20 520 110 HOH HOH . 
Y 4 HOH A 21 521 113 HOH HOH . 
Y 4 HOH A 22 522 123 HOH HOH . 
Y 4 HOH A 23 523 132 HOH HOH . 
Y 4 HOH A 24 524 177 HOH HOH . 
Y 4 HOH A 25 525 180 HOH HOH . 
Y 4 HOH A 26 526 181 HOH HOH . 
Y 4 HOH A 27 527 182 HOH HOH . 
Y 4 HOH A 28 528 183 HOH HOH . 
Y 4 HOH A 29 529 184 HOH HOH . 
Y 4 HOH A 30 530 185 HOH HOH . 
Y 4 HOH A 31 531 191 HOH HOH . 
Y 4 HOH A 32 532 199 HOH HOH . 
Y 4 HOH A 33 533 201 HOH HOH . 
Z 4 HOH B 1 501 6 HOH HOH . 
Z 4 HOH B 2 502 10 HOH HOH . 
Z 4 HOH B 3 503 11 HOH HOH . 
Z 4 HOH B 4 504 14 HOH HOH . 
Z 4 HOH B 5 505 21 HOH HOH . 
Z 4 HOH B 6 506 41 HOH HOH . 
Z 4 HOH B 7 507 48 HOH HOH . 
Z 4 HOH B 8 508 52 HOH HOH . 
Z 4 HOH B 9 509 53 HOH HOH . 
Z 4 HOH B 10 510 83 HOH HOH . 
Z 4 HOH B 11 511 120 HOH HOH . 
Z 4 HOH B 12 512 121 HOH HOH . 
Z 4 HOH B 13 513 122 HOH HOH . 
Z 4 HOH B 14 514 124 HOH HOH . 
Z 4 HOH B 15 515 125 HOH HOH . 
Z 4 HOH B 16 516 126 HOH HOH . 
Z 4 HOH B 17 517 127 HOH HOH . 
Z 4 HOH B 18 518 128 HOH HOH . 
Z 4 HOH B 19 519 129 HOH HOH . 
Z 4 HOH B 20 520 131 HOH HOH . 
Z 4 HOH B 21 521 172 HOH HOH . 
Z 4 HOH B 22 522 176 HOH HOH . 
Z 4 HOH B 23 523 179 HOH HOH . 
Z 4 HOH B 24 524 186 HOH HOH . 
Z 4 HOH B 25 525 187 HOH HOH . 
Z 4 HOH B 26 526 188 HOH HOH . 
Z 4 HOH B 27 527 189 HOH HOH . 
Z 4 HOH B 28 528 190 HOH HOH . 
Z 4 HOH B 29 529 140 HOH HOH . 
AA 4 HOH C 1 501 1 HOH HOH . 
AA 4 HOH C 2 502 5 HOH HOH . 
AA 4 HOH C 3 503 7 HOH HOH . 
AA 4 HOH C 4 504 19 HOH HOH . 
AA 4 HOH C 5 505 20 HOH HOH . 
AA 4 HOH C 6 506 23 HOH HOH . 
AA 4 HOH C 7 507 26 HOH HOH . 
AA 4 HOH C 8 508 28 HOH HOH . 
AA 4 HOH C 9 509 34 HOH HOH . 
AA 4 HOH C 10 510 43 HOH HOH . 
AA 4 HOH C 11 511 44 HOH HOH . 
AA 4 HOH C 12 512 55 HOH HOH . 
AA 4 HOH C 13 513 56 HOH HOH . 
AA 4 HOH C 14 514 58 HOH HOH . 
AA 4 HOH C 15 515 59 HOH HOH . 
AA 4 HOH C 16 516 60 HOH HOH . 
AA 4 HOH C 17 517 77 HOH HOH . 
AA 4 HOH C 18 518 89 HOH HOH . 
AA 4 HOH C 19 519 96 HOH HOH . 
AA 4 HOH C 20 520 104 HOH HOH . 
AA 4 HOH C 21 521 105 HOH HOH . 
AA 4 HOH C 22 522 107 HOH HOH . 
AA 4 HOH C 23 523 108 HOH HOH . 
AA 4 HOH C 24 524 109 HOH HOH . 
AA 4 HOH C 25 525 117 HOH HOH . 
AA 4 HOH C 26 526 118 HOH HOH . 
AA 4 HOH C 27 527 138 HOH HOH . 
AA 4 HOH C 28 528 178 HOH HOH . 
AA 4 HOH C 29 529 202 HOH HOH . 
AA 4 HOH C 30 530 203 HOH HOH . 
BA 4 HOH D 1 501 18 HOH HOH . 
BA 4 HOH D 2 502 25 HOH HOH . 
BA 4 HOH D 3 503 27 HOH HOH . 
BA 4 HOH D 4 504 45 HOH HOH . 
BA 4 HOH D 5 505 54 HOH HOH . 
BA 4 HOH D 6 506 57 HOH HOH . 
BA 4 HOH D 7 507 86 HOH HOH . 
BA 4 HOH D 8 508 88 HOH HOH . 
BA 4 HOH D 9 509 92 HOH HOH . 
BA 4 HOH D 10 510 95 HOH HOH . 
BA 4 HOH D 11 511 111 HOH HOH . 
BA 4 HOH D 12 512 112 HOH HOH . 
BA 4 HOH D 13 513 130 HOH HOH . 
BA 4 HOH D 14 514 135 HOH HOH . 
BA 4 HOH D 15 515 139 HOH HOH . 
BA 4 HOH D 16 516 194 HOH HOH . 
BA 4 HOH D 17 517 195 HOH HOH . 
BA 4 HOH D 18 518 204 HOH HOH . 
CA 4 HOH E 1 501 4 HOH HOH . 
CA 4 HOH E 2 502 13 HOH HOH . 
CA 4 HOH E 3 503 16 HOH HOH . 
CA 4 HOH E 4 504 29 HOH HOH . 
CA 4 HOH E 5 505 61 HOH HOH . 
CA 4 HOH E 6 506 73 HOH HOH . 
CA 4 HOH E 7 507 74 HOH HOH . 
CA 4 HOH E 8 508 75 HOH HOH . 
CA 4 HOH E 9 509 90 HOH HOH . 
CA 4 HOH E 10 510 141 HOH HOH . 
CA 4 HOH E 11 511 142 HOH HOH . 
CA 4 HOH E 12 512 143 HOH HOH . 
CA 4 HOH E 13 513 144 HOH HOH . 
CA 4 HOH E 14 514 145 HOH HOH . 
CA 4 HOH E 15 515 146 HOH HOH . 
CA 4 HOH E 16 516 147 HOH HOH . 
CA 4 HOH E 17 517 148 HOH HOH . 
CA 4 HOH E 18 518 149 HOH HOH . 
CA 4 HOH E 19 519 156 HOH HOH . 
CA 4 HOH E 20 520 173 HOH HOH . 
CA 4 HOH E 21 521 174 HOH HOH . 
CA 4 HOH E 22 522 175 HOH HOH . 
DA 4 HOH F 1 501 9 HOH HOH . 
DA 4 HOH F 2 502 17 HOH HOH . 
DA 4 HOH F 3 503 30 HOH HOH . 
DA 4 HOH F 4 504 62 HOH HOH . 
DA 4 HOH F 5 505 63 HOH HOH . 
DA 4 HOH F 6 506 64 HOH HOH . 
DA 4 HOH F 7 507 65 HOH HOH . 
DA 4 HOH F 8 508 66 HOH HOH . 
DA 4 HOH F 9 509 67 HOH HOH . 
DA 4 HOH F 10 510 76 HOH HOH . 
DA 4 HOH F 11 511 84 HOH HOH . 
DA 4 HOH F 12 512 85 HOH HOH . 
DA 4 HOH F 13 513 91 HOH HOH . 
DA 4 HOH F 14 514 102 HOH HOH . 
DA 4 HOH F 15 515 106 HOH HOH . 
DA 4 HOH F 16 516 114 HOH HOH . 
DA 4 HOH F 17 517 115 HOH HOH . 
DA 4 HOH F 18 518 116 HOH HOH . 
DA 4 HOH F 19 519 119 HOH HOH . 
DA 4 HOH F 20 520 136 HOH HOH . 
DA 4 HOH F 21 521 150 HOH HOH . 
DA 4 HOH F 22 522 151 HOH HOH . 
DA 4 HOH F 23 523 152 HOH HOH . 
DA 4 HOH F 24 524 153 HOH HOH . 
DA 4 HOH F 25 525 154 HOH HOH . 
DA 4 HOH F 26 526 155 HOH HOH . 
DA 4 HOH F 27 527 157 HOH HOH . 
DA 4 HOH F 28 528 158 HOH HOH . 
DA 4 HOH F 29 529 159 HOH HOH . 
DA 4 HOH F 30 530 197 HOH HOH . 
DA 4 HOH F 31 531 198 HOH HOH . 
DA 4 HOH F 32 532 200 HOH HOH . 
EA 4 HOH G 1 501 8 HOH HOH . 
EA 4 HOH G 2 502 22 HOH HOH . 
EA 4 HOH G 3 503 31 HOH HOH . 
EA 4 HOH G 4 504 68 HOH HOH . 
EA 4 HOH G 5 505 69 HOH HOH . 
EA 4 HOH G 6 506 71 HOH HOH . 
EA 4 HOH G 7 507 72 HOH HOH . 
EA 4 HOH G 8 508 103 HOH HOH . 
EA 4 HOH G 9 509 162 HOH HOH . 
EA 4 HOH G 10 510 163 HOH HOH . 
EA 4 HOH G 11 511 164 HOH HOH . 
EA 4 HOH G 12 512 165 HOH HOH . 
EA 4 HOH G 13 513 166 HOH HOH . 
EA 4 HOH G 14 514 167 HOH HOH . 
EA 4 HOH G 15 515 168 HOH HOH . 
EA 4 HOH G 16 516 192 HOH HOH . 
EA 4 HOH G 17 517 193 HOH HOH . 
EA 4 HOH G 18 518 205 HOH HOH . 
FA 4 HOH H 1 501 12 HOH HOH . 
FA 4 HOH H 2 502 33 HOH HOH . 
FA 4 HOH H 3 503 37 HOH HOH . 
FA 4 HOH H 4 504 38 HOH HOH . 
FA 4 HOH H 5 505 70 HOH HOH . 
FA 4 HOH H 6 506 79 HOH HOH . 
FA 4 HOH H 7 507 80 HOH HOH . 
FA 4 HOH H 8 508 82 HOH HOH . 
FA 4 HOH H 9 509 93 HOH HOH . 
FA 4 HOH H 10 510 97 HOH HOH . 
FA 4 HOH H 11 511 98 HOH HOH . 
FA 4 HOH H 12 512 99 HOH HOH . 
FA 4 HOH H 13 513 100 HOH HOH . 
FA 4 HOH H 14 514 101 HOH HOH . 
FA 4 HOH H 15 515 133 HOH HOH . 
FA 4 HOH H 16 516 134 HOH HOH . 
FA 4 HOH H 17 517 137 HOH HOH . 
FA 4 HOH H 18 518 160 HOH HOH . 
FA 4 HOH H 19 519 161 HOH HOH . 
FA 4 HOH H 20 520 169 HOH HOH . 
FA 4 HOH H 21 521 170 HOH HOH . 
FA 4 HOH H 22 522 171 HOH HOH . 
FA 4 HOH H 23 523 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KMT . . . L 3 29.379 32.091 4.88 0.77 51.89 ? C1 KMT 402 B 1 
HETATM 2 O O1 KMT . . . L 3 30.183 32.709 5.614 0.77 52.79 ? O1 KMT 402 B 1 
HETATM 3 O O2 KMT . . . L 3 28.167 32.397 4.781 0.77 51.77 ? O2 KMT 402 B 1 
HETATM 4 C C2 KMT . . . L 3 29.894 30.973 4.093 0.77 50.67 ? C2 KMT 402 B 1 
HETATM 5 O O5 KMT . . . L 3 30.8 30.335 4.56 0.77 50.27 ? O5 KMT 402 B 1 
HETATM 6 C C3 KMT . . . L 3 29.307 30.701 2.761 0.77 50.08 ? C3 KMT 402 B 1 
HETATM 7 C C4 KMT . . . L 3 28.546 31.833 2.163 0.77 51.05 ? C4 KMT 402 B 1 
HETATM 8 S S1 KMT . . . L 3 29.143 32.545 0.674 0.77 53.39 ? S1 KMT 402 B 1 
HETATM 9 C C5 KMT . . . L 3 30.459 33.719 0.942 0.77 54.63 ? C5 KMT 402 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#