data_4LCU # _model_server_result.job_id FT2Fwu3z9YYNKM6zLb68UA _model_server_result.datetime_utc '2024-11-08 13:42:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":207}' # _entry.id 4LCU # _exptl.entry_id 4LCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.018 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LCU _cell.length_a 155.952 _cell.length_b 155.952 _cell.length_c 75.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf3 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 C O TYR 85 C TYR 78 1_555 G K K . C K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 C O GLY 84 C GLY 77 1_555 F K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 C O THR 82 C THR 75 1_555 E K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc4 C O VAL 83 C VAL 76 1_555 F K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc5 C OG1 THR 82 C THR 75 1_555 D K K . C K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc6 C O VAL 83 C VAL 76 1_555 E K K . C K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc7 C O THR 82 C THR 75 1_555 D K K . C K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc8 C O GLY 84 C GLY 77 1_555 G K K . C K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc9 I K K . C K 206 1_555 M O HOH . C HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.329 ? metalc ? metalc10 I K K . C K 206 1_555 M O HOH . C HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.436 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LCU _atom_sites.fract_transf_matrix[1][1] 0.006412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 K C 1 201 1 K K . E 4 K C 1 202 2 K K . F 4 K C 1 203 3 K K . G 4 K C 1 204 4 K K . H 4 K C 1 205 5 K K . I 4 K C 1 206 6 K K . J 5 DGA C 1 207 1001 DGA DGA . K 6 HOH A 1 301 7 HOH HOH . K 6 HOH A 2 302 8 HOH HOH . K 6 HOH A 3 303 13 HOH HOH . K 6 HOH A 4 304 14 HOH HOH . K 6 HOH A 5 305 15 HOH HOH . K 6 HOH A 6 306 16 HOH HOH . K 6 HOH A 7 307 17 HOH HOH . K 6 HOH A 8 308 18 HOH HOH . K 6 HOH A 9 309 19 HOH HOH . K 6 HOH A 10 310 21 HOH HOH . K 6 HOH A 11 311 22 HOH HOH . K 6 HOH A 12 312 24 HOH HOH . K 6 HOH A 13 313 25 HOH HOH . K 6 HOH A 14 314 27 HOH HOH . K 6 HOH A 15 315 28 HOH HOH . K 6 HOH A 16 316 29 HOH HOH . L 6 HOH B 1 301 23 HOH HOH . L 6 HOH B 2 302 30 HOH HOH . L 6 HOH B 3 303 31 HOH HOH . L 6 HOH B 4 304 32 HOH HOH . L 6 HOH B 5 305 33 HOH HOH . L 6 HOH B 6 306 34 HOH HOH . L 6 HOH B 7 307 35 HOH HOH . L 6 HOH B 8 308 37 HOH HOH . L 6 HOH B 9 309 39 HOH HOH . L 6 HOH B 10 310 40 HOH HOH . L 6 HOH B 11 311 41 HOH HOH . L 6 HOH B 12 312 42 HOH HOH . L 6 HOH B 13 313 43 HOH HOH . L 6 HOH B 14 314 44 HOH HOH . L 6 HOH B 15 315 45 HOH HOH . L 6 HOH B 16 316 46 HOH HOH . L 6 HOH B 17 317 47 HOH HOH . L 6 HOH B 18 318 48 HOH HOH . L 6 HOH B 19 319 49 HOH HOH . L 6 HOH B 20 320 50 HOH HOH . L 6 HOH B 21 321 51 HOH HOH . L 6 HOH B 22 322 52 HOH HOH . L 6 HOH B 23 323 53 HOH HOH . L 6 HOH B 24 324 55 HOH HOH . L 6 HOH B 25 325 56 HOH HOH . L 6 HOH B 26 326 57 HOH HOH . M 6 HOH C 1 301 1 HOH HOH . M 6 HOH C 2 302 2 HOH HOH . M 6 HOH C 3 303 3 HOH HOH . M 6 HOH C 4 304 4 HOH HOH . M 6 HOH C 5 305 5 HOH HOH . M 6 HOH C 6 306 6 HOH HOH . M 6 HOH C 7 307 9 HOH HOH . M 6 HOH C 8 308 10 HOH HOH . M 6 HOH C 9 309 11 HOH HOH . M 6 HOH C 10 310 12 HOH HOH . M 6 HOH C 11 311 54 HOH HOH . M 6 HOH C 12 312 58 HOH HOH . M 6 HOH C 13 313 59 HOH HOH . M 6 HOH C 14 314 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . J 5 9.256 17.163 -7.309 1 67.59 ? CA1 DGA 207 C 1 HETATM 2 C CA2 DGA . . . J 5 8.966 16.265 -6.139 1 54.3 ? CA2 DGA 207 C 1 HETATM 3 C CA3 DGA . . . J 5 9.926 16.576 -5.037 1 45.48 ? CA3 DGA 207 C 1 HETATM 4 C CA4 DGA . . . J 5 9.987 15.505 -3.998 1 48.38 ? CA4 DGA 207 C 1 HETATM 5 C CA5 DGA . . . J 5 9.394 15.998 -2.714 1 57.78 ? CA5 DGA 207 C 1 HETATM 6 C CA6 DGA . . . J 5 9.589 15.048 -1.574 1 52.53 ? CA6 DGA 207 C 1 HETATM 7 C CA7 DGA . . . J 5 8.988 15.606 -0.32 1 49.47 ? CA7 DGA 207 C 1 HETATM 8 C CA8 DGA . . . J 5 9 14.583 0.772 1 52.73 ? CA8 DGA 207 C 1 HETATM 9 C CA9 DGA . . . J 5 9.534 15.132 2.061 1 49.97 ? CA9 DGA 207 C 1 HETATM 10 O OA1 DGA . . . J 5 8.525 17.138 -8.302 1 65.89 ? OA1 DGA 207 C 1 HETATM 11 C CB1 DGA . . . J 5 12.825 19.779 -6.317 1 114.66 ? CB1 DGA 207 C 1 HETATM 12 C CB2 DGA . . . J 5 12.143 19.536 -5.01 1 109.61 ? CB2 DGA 207 C 1 HETATM 13 C CB3 DGA . . . J 5 13.133 19.7 -3.898 1 109.91 ? CB3 DGA 207 C 1 HETATM 14 C CB4 DGA . . . J 5 12.745 18.918 -2.682 1 102.95 ? CB4 DGA 207 C 1 HETATM 15 C CB5 DGA . . . J 5 13.655 17.743 -2.539 1 97.96 ? CB5 DGA 207 C 1 HETATM 16 C CB6 DGA . . . J 5 15.045 18.245 -2.341 1 97.81 ? CB6 DGA 207 C 1 HETATM 17 C CB7 DGA . . . J 5 16.035 17.313 -2.953 1 94.63 ? CB7 DGA 207 C 1 HETATM 18 C CB8 DGA . . . J 5 16.084 16.049 -2.166 1 88.55 ? CB8 DGA 207 C 1 HETATM 19 C CB9 DGA . . . J 5 17.448 15.458 -2.282 1 88.71 ? CB9 DGA 207 C 1 HETATM 20 C CAB DGA . . . J 5 17.582 14.287 -1.364 1 89.58 ? CAB DGA 207 C 1 HETATM 21 C CBB DGA . . . J 5 18.965 14.264 -0.801 1 92.99 ? CBB DGA 207 C 1 HETATM 22 C CCB DGA . . . J 5 19.43 12.873 -0.527 1 93.45 ? CCB DGA 207 C 1 HETATM 23 C CDB DGA . . . J 5 20.881 12.897 -0.176 1 89.02 ? CDB DGA 207 C 1 HETATM 24 C CEB DGA . . . J 5 21.675 13.424 -1.325 1 86.29 ? CEB DGA 207 C 1 HETATM 25 O OB1 DGA . . . J 5 13.879 20.405 -6.329 1 123.66 ? OB1 DGA 207 C 1 HETATM 26 O OG1 DGA . . . J 5 10.157 18.206 -7.17 1 79.69 ? OG1 DGA 207 C 1 HETATM 27 C CG1 DGA . . . J 5 10.214 19.187 -8.152 1 92.8 ? CG1 DGA 207 C 1 HETATM 28 C CG2 DGA . . . J 5 11.598 19.689 -8.384 1 102.99 ? CG2 DGA 207 C 1 HETATM 29 O OG2 DGA . . . J 5 12.429 19.095 -7.446 1 112.38 ? OG2 DGA 207 C 1 HETATM 30 C CG3 DGA . . . J 5 12.041 19.392 -9.792 1 91.73 ? CG3 DGA 207 C 1 HETATM 31 O OXT DGA . . . J 5 11.487 20.273 -10.708 1 84.4 ? OXT DGA 207 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #