data_4LD2
#
_model_server_result.job_id            u4ypHK2bIjzspkwHQHfmnQ 
_model_server_result.datetime_utc      '2024-11-24 14:01:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ld2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    4LD2 
#
_exptl.entry_id    4LD2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LD2 
_cell.length_a            38.21 
_cell.length_b            74.55 
_cell.length_c            110.11 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 182 A CYS 180 1_555 A SG CYS 191 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A ND1 HIS 79 A HIS 77 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc2 A SG CYS 114 A CYS 112 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc3 A SG CYS 117 A CYS 115 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc4 C ZN ZN . A ZN 201 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc5 B ND1 HIS 79 B HIS 77 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc6 B SG CYS 114 B CYS 112 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc7 B SG CYS 117 B CYS 115 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc8 E ZN ZN . B ZN 201 1_555 I O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 114 n n 
C1 C2 EDO sing 115 n n 
C1 H11 EDO sing 116 n n 
C1 H12 EDO sing 117 n n 
O1 HO1 EDO sing 118 n n 
C2 O2 EDO sing 119 n n 
C2 H21 EDO sing 120 n n 
C2 H22 EDO sing 121 n n 
O2 HO2 EDO sing 122 n n 
#
_atom_sites.entry_id                     4LD2 
_atom_sites.fract_transf_matrix[1][1]    0.026171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013414 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009082 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 506 ZN ZN . 
D 3 CTN A 1 202 1 CTN DRG . 
E 2 ZN B 1 201 507 ZN ZN . 
F 4 EDO B 1 202 502 EDO EDO . 
G 4 EDO B 1 203 503 EDO EDO . 
H 5 HOH A 1 301 1 HOH HOH . 
H 5 HOH A 2 302 5 HOH HOH . 
H 5 HOH A 3 303 6 HOH HOH . 
H 5 HOH A 4 304 7 HOH HOH . 
H 5 HOH A 5 305 9 HOH HOH . 
H 5 HOH A 6 306 11 HOH HOH . 
H 5 HOH A 7 307 12 HOH HOH . 
H 5 HOH A 8 308 13 HOH HOH . 
H 5 HOH A 9 309 14 HOH HOH . 
H 5 HOH A 10 310 16 HOH HOH . 
H 5 HOH A 11 311 18 HOH HOH . 
H 5 HOH A 12 312 19 HOH HOH . 
H 5 HOH A 13 313 20 HOH HOH . 
H 5 HOH A 14 314 23 HOH HOH . 
H 5 HOH A 15 315 25 HOH HOH . 
H 5 HOH A 16 316 27 HOH HOH . 
H 5 HOH A 17 317 28 HOH HOH . 
H 5 HOH A 18 318 29 HOH HOH . 
H 5 HOH A 19 319 30 HOH HOH . 
H 5 HOH A 20 320 36 HOH HOH . 
H 5 HOH A 21 321 37 HOH HOH . 
H 5 HOH A 22 322 40 HOH HOH . 
H 5 HOH A 23 323 44 HOH HOH . 
H 5 HOH A 24 324 45 HOH HOH . 
H 5 HOH A 25 325 49 HOH HOH . 
H 5 HOH A 26 326 51 HOH HOH . 
H 5 HOH A 27 327 52 HOH HOH . 
H 5 HOH A 28 328 55 HOH HOH . 
H 5 HOH A 29 329 57 HOH HOH . 
H 5 HOH A 30 330 58 HOH HOH . 
H 5 HOH A 31 331 61 HOH HOH . 
H 5 HOH A 32 332 68 HOH HOH . 
H 5 HOH A 33 333 71 HOH HOH . 
H 5 HOH A 34 334 73 HOH HOH . 
H 5 HOH A 35 335 75 HOH HOH . 
H 5 HOH A 36 336 77 HOH HOH . 
H 5 HOH A 37 337 78 HOH HOH . 
H 5 HOH A 38 338 79 HOH HOH . 
H 5 HOH A 39 339 80 HOH HOH . 
H 5 HOH A 40 340 83 HOH HOH . 
H 5 HOH A 41 341 86 HOH HOH . 
H 5 HOH A 42 342 88 HOH HOH . 
H 5 HOH A 43 343 89 HOH HOH . 
H 5 HOH A 44 344 90 HOH HOH . 
H 5 HOH A 45 345 91 HOH HOH . 
H 5 HOH A 46 346 92 HOH HOH . 
H 5 HOH A 47 347 96 HOH HOH . 
H 5 HOH A 48 348 99 HOH HOH . 
H 5 HOH A 49 349 101 HOH HOH . 
H 5 HOH A 50 350 103 HOH HOH . 
H 5 HOH A 51 351 104 HOH HOH . 
H 5 HOH A 52 352 106 HOH HOH . 
H 5 HOH A 53 353 110 HOH HOH . 
H 5 HOH A 54 354 111 HOH HOH . 
H 5 HOH A 55 355 113 HOH HOH . 
H 5 HOH A 56 356 115 HOH HOH . 
H 5 HOH A 57 357 117 HOH HOH . 
H 5 HOH A 58 358 119 HOH HOH . 
H 5 HOH A 59 359 121 HOH HOH . 
H 5 HOH A 60 360 123 HOH HOH . 
H 5 HOH A 61 361 124 HOH HOH . 
H 5 HOH A 62 362 129 HOH HOH . 
H 5 HOH A 63 363 131 HOH HOH . 
H 5 HOH A 64 364 133 HOH HOH . 
H 5 HOH A 65 365 135 HOH HOH . 
H 5 HOH A 66 366 136 HOH HOH . 
H 5 HOH A 67 367 137 HOH HOH . 
H 5 HOH A 68 368 138 HOH HOH . 
H 5 HOH A 69 369 140 HOH HOH . 
H 5 HOH A 70 370 141 HOH HOH . 
H 5 HOH A 71 371 142 HOH HOH . 
H 5 HOH A 72 372 144 HOH HOH . 
H 5 HOH A 73 373 145 HOH HOH . 
H 5 HOH A 74 374 148 HOH HOH . 
H 5 HOH A 75 375 149 HOH HOH . 
H 5 HOH A 76 376 153 HOH HOH . 
H 5 HOH A 77 377 159 HOH HOH . 
H 5 HOH A 78 378 166 HOH HOH . 
H 5 HOH A 79 379 169 HOH HOH . 
H 5 HOH A 80 380 171 HOH HOH . 
H 5 HOH A 81 381 174 HOH HOH . 
H 5 HOH A 82 382 176 HOH HOH . 
H 5 HOH A 83 383 178 HOH HOH . 
H 5 HOH A 84 384 179 HOH HOH . 
H 5 HOH A 85 385 183 HOH HOH . 
H 5 HOH A 86 386 185 HOH HOH . 
H 5 HOH A 87 387 186 HOH HOH . 
H 5 HOH A 88 388 187 HOH HOH . 
H 5 HOH A 89 389 188 HOH HOH . 
H 5 HOH A 90 390 189 HOH HOH . 
H 5 HOH A 91 391 191 HOH HOH . 
H 5 HOH A 92 392 192 HOH HOH . 
H 5 HOH A 93 393 193 HOH HOH . 
H 5 HOH A 94 394 195 HOH HOH . 
H 5 HOH A 95 395 197 HOH HOH . 
H 5 HOH A 96 396 198 HOH HOH . 
H 5 HOH A 97 397 199 HOH HOH . 
H 5 HOH A 98 398 200 HOH HOH . 
H 5 HOH A 99 399 202 HOH HOH . 
H 5 HOH A 100 400 207 HOH HOH . 
H 5 HOH A 101 401 208 HOH HOH . 
H 5 HOH A 102 402 209 HOH HOH . 
H 5 HOH A 103 403 211 HOH HOH . 
H 5 HOH A 104 404 216 HOH HOH . 
H 5 HOH A 105 405 217 HOH HOH . 
H 5 HOH A 106 406 219 HOH HOH . 
H 5 HOH A 107 407 220 HOH HOH . 
H 5 HOH A 108 408 221 HOH HOH . 
H 5 HOH A 109 409 222 HOH HOH . 
H 5 HOH A 110 410 223 HOH HOH . 
H 5 HOH A 111 411 224 HOH HOH . 
H 5 HOH A 112 412 227 HOH HOH . 
H 5 HOH A 113 413 228 HOH HOH . 
H 5 HOH A 114 414 229 HOH HOH . 
H 5 HOH A 115 415 231 HOH HOH . 
H 5 HOH A 116 416 232 HOH HOH . 
I 5 HOH B 1 301 2 HOH HOH . 
I 5 HOH B 2 302 3 HOH HOH . 
I 5 HOH B 3 303 4 HOH HOH . 
I 5 HOH B 4 304 8 HOH HOH . 
I 5 HOH B 5 305 10 HOH HOH . 
I 5 HOH B 6 306 15 HOH HOH . 
I 5 HOH B 7 307 17 HOH HOH . 
I 5 HOH B 8 308 21 HOH HOH . 
I 5 HOH B 9 309 22 HOH HOH . 
I 5 HOH B 10 310 24 HOH HOH . 
I 5 HOH B 11 311 26 HOH HOH . 
I 5 HOH B 12 312 31 HOH HOH . 
I 5 HOH B 13 313 33 HOH HOH . 
I 5 HOH B 14 314 34 HOH HOH . 
I 5 HOH B 15 315 35 HOH HOH . 
I 5 HOH B 16 316 39 HOH HOH . 
I 5 HOH B 17 317 41 HOH HOH . 
I 5 HOH B 18 318 42 HOH HOH . 
I 5 HOH B 19 319 43 HOH HOH . 
I 5 HOH B 20 320 46 HOH HOH . 
I 5 HOH B 21 321 47 HOH HOH . 
I 5 HOH B 22 322 48 HOH HOH . 
I 5 HOH B 23 323 50 HOH HOH . 
I 5 HOH B 24 324 53 HOH HOH . 
I 5 HOH B 25 325 54 HOH HOH . 
I 5 HOH B 26 326 56 HOH HOH . 
I 5 HOH B 27 327 59 HOH HOH . 
I 5 HOH B 28 328 60 HOH HOH . 
I 5 HOH B 29 329 62 HOH HOH . 
I 5 HOH B 30 330 63 HOH HOH . 
I 5 HOH B 31 331 64 HOH HOH . 
I 5 HOH B 32 332 65 HOH HOH . 
I 5 HOH B 33 333 66 HOH HOH . 
I 5 HOH B 34 334 67 HOH HOH . 
I 5 HOH B 35 335 69 HOH HOH . 
I 5 HOH B 36 336 70 HOH HOH . 
I 5 HOH B 37 337 72 HOH HOH . 
I 5 HOH B 38 338 74 HOH HOH . 
I 5 HOH B 39 339 76 HOH HOH . 
I 5 HOH B 40 340 81 HOH HOH . 
I 5 HOH B 41 341 82 HOH HOH . 
I 5 HOH B 42 342 84 HOH HOH . 
I 5 HOH B 43 343 85 HOH HOH . 
I 5 HOH B 44 344 87 HOH HOH . 
I 5 HOH B 45 345 93 HOH HOH . 
I 5 HOH B 46 346 95 HOH HOH . 
I 5 HOH B 47 347 97 HOH HOH . 
I 5 HOH B 48 348 98 HOH HOH . 
I 5 HOH B 49 349 100 HOH HOH . 
I 5 HOH B 50 350 102 HOH HOH . 
I 5 HOH B 51 351 105 HOH HOH . 
I 5 HOH B 52 352 107 HOH HOH . 
I 5 HOH B 53 353 108 HOH HOH . 
I 5 HOH B 54 354 109 HOH HOH . 
I 5 HOH B 55 355 112 HOH HOH . 
I 5 HOH B 56 356 114 HOH HOH . 
I 5 HOH B 57 357 116 HOH HOH . 
I 5 HOH B 58 358 118 HOH HOH . 
I 5 HOH B 59 359 120 HOH HOH . 
I 5 HOH B 60 360 122 HOH HOH . 
I 5 HOH B 61 361 125 HOH HOH . 
I 5 HOH B 62 362 126 HOH HOH . 
I 5 HOH B 63 363 128 HOH HOH . 
I 5 HOH B 64 364 130 HOH HOH . 
I 5 HOH B 65 365 134 HOH HOH . 
I 5 HOH B 66 366 139 HOH HOH . 
I 5 HOH B 67 367 143 HOH HOH . 
I 5 HOH B 68 368 146 HOH HOH . 
I 5 HOH B 69 369 147 HOH HOH . 
I 5 HOH B 70 370 150 HOH HOH . 
I 5 HOH B 71 371 151 HOH HOH . 
I 5 HOH B 72 372 152 HOH HOH . 
I 5 HOH B 73 373 154 HOH HOH . 
I 5 HOH B 74 374 155 HOH HOH . 
I 5 HOH B 75 375 156 HOH HOH . 
I 5 HOH B 76 376 157 HOH HOH . 
I 5 HOH B 77 377 158 HOH HOH . 
I 5 HOH B 78 378 160 HOH HOH . 
I 5 HOH B 79 379 161 HOH HOH . 
I 5 HOH B 80 380 162 HOH HOH . 
I 5 HOH B 81 381 163 HOH HOH . 
I 5 HOH B 82 382 164 HOH HOH . 
I 5 HOH B 83 383 165 HOH HOH . 
I 5 HOH B 84 384 167 HOH HOH . 
I 5 HOH B 85 385 168 HOH HOH . 
I 5 HOH B 86 386 170 HOH HOH . 
I 5 HOH B 87 387 172 HOH HOH . 
I 5 HOH B 88 388 173 HOH HOH . 
I 5 HOH B 89 389 175 HOH HOH . 
I 5 HOH B 90 390 177 HOH HOH . 
I 5 HOH B 91 391 180 HOH HOH . 
I 5 HOH B 92 392 181 HOH HOH . 
I 5 HOH B 93 393 182 HOH HOH . 
I 5 HOH B 94 394 184 HOH HOH . 
I 5 HOH B 95 395 190 HOH HOH . 
I 5 HOH B 96 396 194 HOH HOH . 
I 5 HOH B 97 397 196 HOH HOH . 
I 5 HOH B 98 398 201 HOH HOH . 
I 5 HOH B 99 399 203 HOH HOH . 
I 5 HOH B 100 400 204 HOH HOH . 
I 5 HOH B 101 401 205 HOH HOH . 
I 5 HOH B 102 402 206 HOH HOH . 
I 5 HOH B 103 403 210 HOH HOH . 
I 5 HOH B 104 404 212 HOH HOH . 
I 5 HOH B 105 405 213 HOH HOH . 
I 5 HOH B 106 406 214 HOH HOH . 
I 5 HOH B 107 407 215 HOH HOH . 
I 5 HOH B 108 408 218 HOH HOH . 
I 5 HOH B 109 409 225 HOH HOH . 
I 5 HOH B 110 410 226 HOH HOH . 
I 5 HOH B 111 411 230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 26.266 53.876 27.879 1 24.24 ? C1 EDO 202 B 1 
HETATM 2 O O1 EDO . . . F 4 27.121 54.049 26.756 1 22.91 ? O1 EDO 202 B 1 
HETATM 3 C C2 EDO . . . F 4 26.56 52.521 28.556 1 22.67 ? C2 EDO 202 B 1 
HETATM 4 O O2 EDO . . . F 4 26.029 51.451 27.751 1 18.88 ? O2 EDO 202 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#