data_4LDE
#
_model_server_result.job_id            JkPpPRf0s-8drDuze5UeDw 
_model_server_result.datetime_utc      '2025-02-22 21:04:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lde 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1402}' 
#
_entry.id    4LDE 
#
_exptl.entry_id    4LDE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LDE 
_cell.length_a            49.67 
_cell.length_b            66.48 
_cell.length_c            303.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LDE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 255 A CYS 1106 1_555 A SG CYS 340 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 333 A CYS 1184 1_555 A SG CYS 339 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OD1 ASN 252 A ASN 1103 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 A O CYS 333 A CYS 1184 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc3 A O GLU 336 A GLU 1187 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc4 A O CYS 339 A CYS 1190 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 D NA NA . A NA 1402 1_555 F O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4LDE 
_atom_sites.fract_transf_matrix[1][1]    0.020133 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003299 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 P0G A 1 1401 366 P0G P0G . 
D 4 NA A 1 1402 1 NA NA . 
E 5 1WV A 1 1403 1 1WV 1WW . 
F 6 HOH A 1 1501 1 HOH HOH . 
F 6 HOH A 2 1502 2 HOH HOH . 
F 6 HOH A 3 1503 3 HOH HOH . 
F 6 HOH A 4 1504 4 HOH HOH . 
F 6 HOH A 5 1505 5 HOH HOH . 
F 6 HOH A 6 1506 6 HOH HOH . 
F 6 HOH A 7 1507 7 HOH HOH . 
F 6 HOH A 8 1508 10 HOH HOH . 
F 6 HOH A 9 1509 11 HOH HOH . 
F 6 HOH A 10 1510 12 HOH HOH . 
F 6 HOH A 11 1511 13 HOH HOH . 
F 6 HOH A 12 1512 14 HOH HOH . 
F 6 HOH A 13 1513 15 HOH HOH . 
F 6 HOH A 14 1514 16 HOH HOH . 
F 6 HOH A 15 1515 17 HOH HOH . 
F 6 HOH A 16 1516 18 HOH HOH . 
F 6 HOH A 17 1517 19 HOH HOH . 
F 6 HOH A 18 1518 20 HOH HOH . 
F 6 HOH A 19 1519 21 HOH HOH . 
F 6 HOH A 20 1520 24 HOH HOH . 
F 6 HOH A 21 1521 25 HOH HOH . 
F 6 HOH A 22 1522 26 HOH HOH . 
F 6 HOH A 23 1523 27 HOH HOH . 
F 6 HOH A 24 1524 28 HOH HOH . 
F 6 HOH A 25 1525 30 HOH HOH . 
F 6 HOH A 26 1526 31 HOH HOH . 
F 6 HOH A 27 1527 34 HOH HOH . 
F 6 HOH A 28 1528 35 HOH HOH . 
F 6 HOH A 29 1529 36 HOH HOH . 
F 6 HOH A 30 1530 37 HOH HOH . 
F 6 HOH A 31 1531 38 HOH HOH . 
F 6 HOH A 32 1532 39 HOH HOH . 
F 6 HOH A 33 1533 40 HOH HOH . 
F 6 HOH A 34 1534 41 HOH HOH . 
F 6 HOH A 35 1535 42 HOH HOH . 
F 6 HOH A 36 1536 43 HOH HOH . 
F 6 HOH A 37 1537 44 HOH HOH . 
F 6 HOH A 38 1538 48 HOH HOH . 
F 6 HOH A 39 1539 49 HOH HOH . 
F 6 HOH A 40 1540 50 HOH HOH . 
F 6 HOH A 41 1541 51 HOH HOH . 
F 6 HOH A 42 1542 52 HOH HOH . 
F 6 HOH A 43 1543 55 HOH HOH . 
F 6 HOH A 44 1544 56 HOH HOH . 
F 6 HOH A 45 1545 57 HOH HOH . 
F 6 HOH A 46 1546 58 HOH HOH . 
F 6 HOH A 47 1547 59 HOH HOH . 
F 6 HOH A 48 1548 60 HOH HOH . 
F 6 HOH A 49 1549 61 HOH HOH . 
F 6 HOH A 50 1550 62 HOH HOH . 
F 6 HOH A 51 1551 63 HOH HOH . 
F 6 HOH A 52 1552 64 HOH HOH . 
F 6 HOH A 53 1553 65 HOH HOH . 
F 6 HOH A 54 1554 66 HOH HOH . 
F 6 HOH A 55 1555 67 HOH HOH . 
F 6 HOH A 56 1556 68 HOH HOH . 
F 6 HOH A 57 1557 69 HOH HOH . 
F 6 HOH A 58 1558 70 HOH HOH . 
F 6 HOH A 59 1559 71 HOH HOH . 
F 6 HOH A 60 1560 72 HOH HOH . 
F 6 HOH A 61 1561 75 HOH HOH . 
F 6 HOH A 62 1562 76 HOH HOH . 
F 6 HOH A 63 1563 78 HOH HOH . 
F 6 HOH A 64 1564 79 HOH HOH . 
F 6 HOH A 65 1565 80 HOH HOH . 
F 6 HOH A 66 1566 81 HOH HOH . 
F 6 HOH A 67 1567 82 HOH HOH . 
F 6 HOH A 68 1568 83 HOH HOH . 
F 6 HOH A 69 1569 84 HOH HOH . 
G 6 HOH B 1 201 8 HOH HOH . 
G 6 HOH B 2 202 9 HOH HOH . 
G 6 HOH B 3 203 22 HOH HOH . 
G 6 HOH B 4 204 23 HOH HOH . 
G 6 HOH B 5 205 29 HOH HOH . 
G 6 HOH B 6 206 32 HOH HOH . 
G 6 HOH B 7 207 33 HOH HOH . 
G 6 HOH B 8 208 45 HOH HOH . 
G 6 HOH B 9 209 46 HOH HOH . 
G 6 HOH B 10 210 47 HOH HOH . 
G 6 HOH B 11 211 53 HOH HOH . 
G 6 HOH B 12 212 54 HOH HOH . 
G 6 HOH B 13 213 73 HOH HOH . 
G 6 HOH B 14 214 74 HOH HOH . 
G 6 HOH B 15 215 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -6.539 
_atom_site.Cartn_y               -4.817 
_atom_site.Cartn_z               -62.255 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#