data_4LDE
#
_model_server_result.job_id            SkflXzjEFyOXTcQtHGtb_Q 
_model_server_result.datetime_utc      '2024-11-23 21:14:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lde 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1403}' 
#
_entry.id    4LDE 
#
_exptl.entry_id    4LDE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.434 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LDE 
_cell.length_a            49.67 
_cell.length_b            66.48 
_cell.length_c            303.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LDE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 255 A CYS 1106 1_555 A SG CYS 340 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 333 A CYS 1184 1_555 A SG CYS 339 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OD1 ASN 252 A ASN 1103 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 A O CYS 333 A CYS 1184 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc3 A O GLU 336 A GLU 1187 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc4 A O CYS 339 A CYS 1190 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 D NA NA . A NA 1402 1_555 F O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
#
_chem_comp.formula           'C17 H32 O4' 
_chem_comp.formula_weight    300.434 
_chem_comp.id                1WV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 O21 1WV sing 1 n n 
C20 C18 1WV sing 2 n n 
O19 C18 1WV sing 3 n n 
C18 C17 1WV sing 4 n n 
C17 O16 1WV sing 5 n n 
O16 C14 1WV sing 6 n n 
C14 O15 1WV doub 7 n n 
C14 C13 1WV sing 8 n n 
C13 C12 1WV sing 9 n n 
C12 C11 1WV sing 10 n n 
C11 C10 1WV sing 11 n n 
C10 C09 1WV sing 12 n n 
C09 C08 1WV sing 13 n n 
C08 C07 1WV doub 14 z n 
C10 H1 1WV sing 15 n n 
C13 H2 1WV sing 16 n n 
C17 H3 1WV sing 17 n n 
C17 H4 1WV sing 18 n n 
C20 H5 1WV sing 19 n n 
C20 H6 1WV sing 20 n n 
C07 H8 1WV sing 21 n n 
C08 H10 1WV sing 22 n n 
C09 H12 1WV sing 23 n n 
C09 H13 1WV sing 24 n n 
C11 H14 1WV sing 25 n n 
C12 H15 1WV sing 26 n n 
C18 H16 1WV sing 27 n n 
O19 H17 1WV sing 28 n n 
O21 H18 1WV sing 29 n n 
C07 C1 1WV sing 30 n n 
C1 C2 1WV sing 31 n n 
C2 C3 1WV sing 32 n n 
C3 C4 1WV sing 33 n n 
C4 C5 1WV sing 34 n n 
C5 C6 1WV sing 35 n n 
C10 H7 1WV sing 36 n n 
C13 H9 1WV sing 37 n n 
C11 H11 1WV sing 38 n n 
C12 H19 1WV sing 39 n n 
C1 H20 1WV sing 40 n n 
C1 H21 1WV sing 41 n n 
C2 H22 1WV sing 42 n n 
C2 H23 1WV sing 43 n n 
C3 H24 1WV sing 44 n n 
C3 H25 1WV sing 45 n n 
C4 H26 1WV sing 46 n n 
C4 H27 1WV sing 47 n n 
C5 H28 1WV sing 48 n n 
C5 H29 1WV sing 49 n n 
C6 H30 1WV sing 50 n n 
C6 H31 1WV sing 51 n n 
C6 H32 1WV sing 52 n n 
#
_atom_sites.entry_id                     4LDE 
_atom_sites.fract_transf_matrix[1][1]    0.020133 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003299 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 P0G A 1 1401 366 P0G P0G . 
D 4 NA A 1 1402 1 NA NA . 
E 5 1WV A 1 1403 1 1WV 1WW . 
F 6 HOH A 1 1501 1 HOH HOH . 
F 6 HOH A 2 1502 2 HOH HOH . 
F 6 HOH A 3 1503 3 HOH HOH . 
F 6 HOH A 4 1504 4 HOH HOH . 
F 6 HOH A 5 1505 5 HOH HOH . 
F 6 HOH A 6 1506 6 HOH HOH . 
F 6 HOH A 7 1507 7 HOH HOH . 
F 6 HOH A 8 1508 10 HOH HOH . 
F 6 HOH A 9 1509 11 HOH HOH . 
F 6 HOH A 10 1510 12 HOH HOH . 
F 6 HOH A 11 1511 13 HOH HOH . 
F 6 HOH A 12 1512 14 HOH HOH . 
F 6 HOH A 13 1513 15 HOH HOH . 
F 6 HOH A 14 1514 16 HOH HOH . 
F 6 HOH A 15 1515 17 HOH HOH . 
F 6 HOH A 16 1516 18 HOH HOH . 
F 6 HOH A 17 1517 19 HOH HOH . 
F 6 HOH A 18 1518 20 HOH HOH . 
F 6 HOH A 19 1519 21 HOH HOH . 
F 6 HOH A 20 1520 24 HOH HOH . 
F 6 HOH A 21 1521 25 HOH HOH . 
F 6 HOH A 22 1522 26 HOH HOH . 
F 6 HOH A 23 1523 27 HOH HOH . 
F 6 HOH A 24 1524 28 HOH HOH . 
F 6 HOH A 25 1525 30 HOH HOH . 
F 6 HOH A 26 1526 31 HOH HOH . 
F 6 HOH A 27 1527 34 HOH HOH . 
F 6 HOH A 28 1528 35 HOH HOH . 
F 6 HOH A 29 1529 36 HOH HOH . 
F 6 HOH A 30 1530 37 HOH HOH . 
F 6 HOH A 31 1531 38 HOH HOH . 
F 6 HOH A 32 1532 39 HOH HOH . 
F 6 HOH A 33 1533 40 HOH HOH . 
F 6 HOH A 34 1534 41 HOH HOH . 
F 6 HOH A 35 1535 42 HOH HOH . 
F 6 HOH A 36 1536 43 HOH HOH . 
F 6 HOH A 37 1537 44 HOH HOH . 
F 6 HOH A 38 1538 48 HOH HOH . 
F 6 HOH A 39 1539 49 HOH HOH . 
F 6 HOH A 40 1540 50 HOH HOH . 
F 6 HOH A 41 1541 51 HOH HOH . 
F 6 HOH A 42 1542 52 HOH HOH . 
F 6 HOH A 43 1543 55 HOH HOH . 
F 6 HOH A 44 1544 56 HOH HOH . 
F 6 HOH A 45 1545 57 HOH HOH . 
F 6 HOH A 46 1546 58 HOH HOH . 
F 6 HOH A 47 1547 59 HOH HOH . 
F 6 HOH A 48 1548 60 HOH HOH . 
F 6 HOH A 49 1549 61 HOH HOH . 
F 6 HOH A 50 1550 62 HOH HOH . 
F 6 HOH A 51 1551 63 HOH HOH . 
F 6 HOH A 52 1552 64 HOH HOH . 
F 6 HOH A 53 1553 65 HOH HOH . 
F 6 HOH A 54 1554 66 HOH HOH . 
F 6 HOH A 55 1555 67 HOH HOH . 
F 6 HOH A 56 1556 68 HOH HOH . 
F 6 HOH A 57 1557 69 HOH HOH . 
F 6 HOH A 58 1558 70 HOH HOH . 
F 6 HOH A 59 1559 71 HOH HOH . 
F 6 HOH A 60 1560 72 HOH HOH . 
F 6 HOH A 61 1561 75 HOH HOH . 
F 6 HOH A 62 1562 76 HOH HOH . 
F 6 HOH A 63 1563 78 HOH HOH . 
F 6 HOH A 64 1564 79 HOH HOH . 
F 6 HOH A 65 1565 80 HOH HOH . 
F 6 HOH A 66 1566 81 HOH HOH . 
F 6 HOH A 67 1567 82 HOH HOH . 
F 6 HOH A 68 1568 83 HOH HOH . 
F 6 HOH A 69 1569 84 HOH HOH . 
G 6 HOH B 1 201 8 HOH HOH . 
G 6 HOH B 2 202 9 HOH HOH . 
G 6 HOH B 3 203 22 HOH HOH . 
G 6 HOH B 4 204 23 HOH HOH . 
G 6 HOH B 5 205 29 HOH HOH . 
G 6 HOH B 6 206 32 HOH HOH . 
G 6 HOH B 7 207 33 HOH HOH . 
G 6 HOH B 8 208 45 HOH HOH . 
G 6 HOH B 9 209 46 HOH HOH . 
G 6 HOH B 10 210 47 HOH HOH . 
G 6 HOH B 11 211 53 HOH HOH . 
G 6 HOH B 12 212 54 HOH HOH . 
G 6 HOH B 13 213 73 HOH HOH . 
G 6 HOH B 14 214 74 HOH HOH . 
G 6 HOH B 15 215 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 1WV . . . E 5 -13.782 -21.436 -50.364 1 71.1 ? C10 1WV 1403 A 1 
HETATM 2 C C13 1WV . . . E 5 -12.608 -20.464 -53.946 1 76.4 ? C13 1WV 1403 A 1 
HETATM 3 C C17 1WV . . . E 5 -13.032 -21.688 -57.496 1 92.34 ? C17 1WV 1403 A 1 
HETATM 4 C C20 1WV . . . E 5 -14.2 -22.74 -59.484 1 99.76 ? C20 1WV 1403 A 1 
HETATM 5 C C07 1WV . . . E 5 -13.818 -22.082 -46.715 1 71.11 ? C07 1WV 1403 A 1 
HETATM 6 C C08 1WV . . . E 5 -14.522 -21.829 -47.889 1 69.65 ? C08 1WV 1403 A 1 
HETATM 7 C C09 1WV . . . E 5 -13.941 -20.878 -48.954 1 69.12 ? C09 1WV 1403 A 1 
HETATM 8 C C11 1WV . . . E 5 -13.152 -20.548 -51.428 1 71.28 ? C11 1WV 1403 A 1 
HETATM 9 C C12 1WV . . . E 5 -12.587 -21.223 -52.644 1 72.88 ? C12 1WV 1403 A 1 
HETATM 10 C C14 1WV . . . E 5 -12.394 -21.233 -55.203 1 80.52 ? C14 1WV 1403 A 1 
HETATM 11 O O15 1WV . . . E 5 -11.888 -22.319 -55.142 1 79.96 ? O15 1WV 1403 A 1 
HETATM 12 O O16 1WV . . . E 5 -13.056 -20.85 -56.364 1 86.68 ? O16 1WV 1403 A 1 
HETATM 13 C C18 1WV . . . E 5 -14.25 -21.703 -58.379 1 97.35 ? C18 1WV 1403 A 1 
HETATM 14 O O19 1WV . . . E 5 -14.682 -20.466 -58.78 1 96.26 ? O19 1WV 1403 A 1 
HETATM 15 O O21 1WV . . . E 5 -14.643 -24.014 -59.184 1 98.02 ? O21 1WV 1403 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#