data_4LDF
#
_model_server_result.job_id            RUt8jW2ANsfQUZxCwrhjkA 
_model_server_result.datetime_utc      '2024-10-12 15:25:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ldf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4LDF 
#
_exptl.entry_id    4LDF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.5 
_cell.angle_gamma         90 
_cell.entry_id            4LDF 
_cell.length_a            37.892 
_cell.length_b            44.642 
_cell.length_c            59.537 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
A,C,F 3 1 
B,D,E,G 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_758 -x+2,y+1/2,-z+3 -1 0 0 0 1 0 0 0 -1 55.564661 22.321 177.462863 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4LDF 
_atom_sites.fract_transf_matrix[1][1]    0.026391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0224 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016905 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 1 GOL GOL . 
D 2 GOL B 1 201 1 GOL GOL . 
E 3 UNX B 1 202 1 UNX UNX . 
F 4 HOH A 1 301 3 HOH HOH . 
F 4 HOH A 2 302 4 HOH HOH . 
F 4 HOH A 3 303 5 HOH HOH . 
F 4 HOH A 4 304 9 HOH HOH . 
F 4 HOH A 5 305 12 HOH HOH . 
F 4 HOH A 6 306 13 HOH HOH . 
F 4 HOH A 7 307 14 HOH HOH . 
F 4 HOH A 8 308 15 HOH HOH . 
F 4 HOH A 9 309 16 HOH HOH . 
F 4 HOH A 10 310 17 HOH HOH . 
F 4 HOH A 11 311 18 HOH HOH . 
F 4 HOH A 12 312 21 HOH HOH . 
F 4 HOH A 13 313 23 HOH HOH . 
F 4 HOH A 14 314 25 HOH HOH . 
F 4 HOH A 15 315 26 HOH HOH . 
F 4 HOH A 16 316 27 HOH HOH . 
F 4 HOH A 17 317 28 HOH HOH . 
F 4 HOH A 18 318 30 HOH HOH . 
F 4 HOH A 19 319 35 HOH HOH . 
F 4 HOH A 20 320 44 HOH HOH . 
F 4 HOH A 21 321 46 HOH HOH . 
F 4 HOH A 22 322 47 HOH HOH . 
F 4 HOH A 23 323 48 HOH HOH . 
F 4 HOH A 24 324 49 HOH HOH . 
F 4 HOH A 25 325 50 HOH HOH . 
F 4 HOH A 26 326 51 HOH HOH . 
F 4 HOH A 27 327 52 HOH HOH . 
F 4 HOH A 28 328 53 HOH HOH . 
F 4 HOH A 29 329 54 HOH HOH . 
F 4 HOH A 30 330 69 HOH HOH . 
F 4 HOH A 31 331 70 HOH HOH . 
F 4 HOH A 32 332 71 HOH HOH . 
F 4 HOH A 33 333 75 HOH HOH . 
F 4 HOH A 34 334 79 HOH HOH . 
F 4 HOH A 35 335 80 HOH HOH . 
F 4 HOH A 36 336 81 HOH HOH . 
F 4 HOH A 37 337 82 HOH HOH . 
F 4 HOH A 38 338 83 HOH HOH . 
F 4 HOH A 39 339 84 HOH HOH . 
F 4 HOH A 40 340 85 HOH HOH . 
F 4 HOH A 41 341 86 HOH HOH . 
F 4 HOH A 42 342 87 HOH HOH . 
F 4 HOH A 43 343 88 HOH HOH . 
F 4 HOH A 44 344 89 HOH HOH . 
F 4 HOH A 45 345 90 HOH HOH . 
F 4 HOH A 46 346 91 HOH HOH . 
F 4 HOH A 47 347 92 HOH HOH . 
F 4 HOH A 48 348 103 HOH HOH . 
F 4 HOH A 49 349 104 HOH HOH . 
F 4 HOH A 50 350 105 HOH HOH . 
F 4 HOH A 51 351 106 HOH HOH . 
F 4 HOH A 52 352 107 HOH HOH . 
F 4 HOH A 53 353 109 HOH HOH . 
F 4 HOH A 54 354 112 HOH HOH . 
F 4 HOH A 55 355 113 HOH HOH . 
F 4 HOH A 56 356 118 HOH HOH . 
F 4 HOH A 57 357 119 HOH HOH . 
G 4 HOH B 1 301 6 HOH HOH . 
G 4 HOH B 2 302 7 HOH HOH . 
G 4 HOH B 3 303 10 HOH HOH . 
G 4 HOH B 4 304 11 HOH HOH . 
G 4 HOH B 5 305 19 HOH HOH . 
G 4 HOH B 6 306 20 HOH HOH . 
G 4 HOH B 7 307 24 HOH HOH . 
G 4 HOH B 8 308 29 HOH HOH . 
G 4 HOH B 9 309 31 HOH HOH . 
G 4 HOH B 10 310 32 HOH HOH . 
G 4 HOH B 11 311 33 HOH HOH . 
G 4 HOH B 12 312 36 HOH HOH . 
G 4 HOH B 13 313 37 HOH HOH . 
G 4 HOH B 14 314 38 HOH HOH . 
G 4 HOH B 15 315 39 HOH HOH . 
G 4 HOH B 16 316 41 HOH HOH . 
G 4 HOH B 17 317 42 HOH HOH . 
G 4 HOH B 18 318 55 HOH HOH . 
G 4 HOH B 19 319 56 HOH HOH . 
G 4 HOH B 20 320 57 HOH HOH . 
G 4 HOH B 21 321 58 HOH HOH . 
G 4 HOH B 22 322 59 HOH HOH . 
G 4 HOH B 23 323 60 HOH HOH . 
G 4 HOH B 24 324 61 HOH HOH . 
G 4 HOH B 25 325 62 HOH HOH . 
G 4 HOH B 26 326 63 HOH HOH . 
G 4 HOH B 27 327 66 HOH HOH . 
G 4 HOH B 28 328 67 HOH HOH . 
G 4 HOH B 29 329 68 HOH HOH . 
G 4 HOH B 30 330 72 HOH HOH . 
G 4 HOH B 31 331 76 HOH HOH . 
G 4 HOH B 32 332 77 HOH HOH . 
G 4 HOH B 33 333 78 HOH HOH . 
G 4 HOH B 34 334 93 HOH HOH . 
G 4 HOH B 35 335 94 HOH HOH . 
G 4 HOH B 36 336 95 HOH HOH . 
G 4 HOH B 37 337 96 HOH HOH . 
G 4 HOH B 38 338 97 HOH HOH . 
G 4 HOH B 39 339 98 HOH HOH . 
G 4 HOH B 40 340 99 HOH HOH . 
G 4 HOH B 41 341 100 HOH HOH . 
G 4 HOH B 42 342 101 HOH HOH . 
G 4 HOH B 43 343 102 HOH HOH . 
G 4 HOH B 44 344 108 HOH HOH . 
G 4 HOH B 45 345 110 HOH HOH . 
G 4 HOH B 46 346 111 HOH HOH . 
G 4 HOH B 47 347 114 HOH HOH . 
G 4 HOH B 48 348 115 HOH HOH . 
G 4 HOH B 49 349 116 HOH HOH . 
G 4 HOH B 50 350 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 30.997 -15.617 66.268 1 50.5 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . C 2 30.263 -16.763 66.674 1 50.73 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . C 2 30.054 -14.472 65.98 1 50.1 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . C 2 29.191 -14.84 64.905 1 49.85 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . C 2 30.792 -13.204 65.615 1 49.66 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . C 2 31.474 -12.654 66.737 1 49.74 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#