data_4LDK
#
_model_server_result.job_id            IH1aYWS_-QCguXUUuww9Vw 
_model_server_result.datetime_utc      '2025-02-27 01:06:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ldk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4LDK 
#
_exptl.entry_id    4LDK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LDK 
_cell.length_a            50.897 
_cell.length_b            77.77 
_cell.length_c            62.772 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LDK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -31.386 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 16 A CYS 95 1_555 A SG CYS 125 A CYS 204 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf2 A SG CYS 92 A CYS 171 1_555 A SG CYS 109 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
covale ? covale1 A C GLU 65 A GLU 144 1_555 A N CSD 66 A CSD 145 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C GLU 65 A GLU 144 1_555 A N CSD 66 A CSD 145 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C CSD 66 A CSD 145 1_555 A N ALA 67 A ALA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
metalc ? metalc1 A OD1 ASN 99 A ASN 178 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc2 B O2A FAD . A FAD 301 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc3 B O2' FAD . A FAD 301 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 98 n n 
PA O2A FAD sing 99 n n 
PA O5B FAD sing 100 n n 
PA O3P FAD sing 101 n n 
O2A HOA2 FAD sing 102 n n 
O5B C5B FAD sing 103 n n 
C5B C4B FAD sing 104 n n 
C5B H51A FAD sing 105 n n 
C5B H52A FAD sing 106 n n 
C4B O4B FAD sing 107 n n 
C4B C3B FAD sing 108 n n 
C4B H4B FAD sing 109 n n 
O4B C1B FAD sing 110 n n 
C3B O3B FAD sing 111 n n 
C3B C2B FAD sing 112 n n 
C3B H3B FAD sing 113 n n 
O3B HO3A FAD sing 114 n n 
C2B O2B FAD sing 115 n n 
C2B C1B FAD sing 116 n n 
C2B H2B FAD sing 117 n n 
O2B HO2A FAD sing 118 n n 
C1B N9A FAD sing 119 n n 
C1B H1B FAD sing 120 n n 
N9A C8A FAD sing 121 n y 
N9A C4A FAD sing 122 n y 
C8A N7A FAD doub 123 n y 
C8A H8A FAD sing 124 n n 
N7A C5A FAD sing 125 n y 
C5A C6A FAD sing 126 n y 
C5A C4A FAD doub 127 n y 
C6A N6A FAD sing 128 n n 
C6A N1A FAD doub 129 n y 
N6A H61A FAD sing 130 n n 
N6A H62A FAD sing 131 n n 
N1A C2A FAD sing 132 n y 
C2A N3A FAD doub 133 n y 
C2A H2A FAD sing 134 n n 
N3A C4A FAD sing 135 n y 
N1 C2 FAD sing 136 n n 
N1 C10 FAD doub 137 n n 
C2 O2 FAD doub 138 n n 
C2 N3 FAD sing 139 n n 
N3 C4 FAD sing 140 n n 
N3 HN3 FAD sing 141 n n 
C4 O4 FAD doub 142 n n 
C4 C4X FAD sing 143 n n 
C4X N5 FAD doub 144 n n 
C4X C10 FAD sing 145 n n 
N5 C5X FAD sing 146 n n 
C5X C6 FAD doub 147 n y 
C5X C9A FAD sing 148 n y 
C6 C7 FAD sing 149 n y 
C6 H6 FAD sing 150 n n 
C7 C7M FAD sing 151 n n 
C7 C8 FAD doub 152 n y 
C7M HM71 FAD sing 153 n n 
C7M HM72 FAD sing 154 n n 
C7M HM73 FAD sing 155 n n 
C8 C8M FAD sing 156 n n 
C8 C9 FAD sing 157 n y 
C8M HM81 FAD sing 158 n n 
C8M HM82 FAD sing 159 n n 
C8M HM83 FAD sing 160 n n 
C9 C9A FAD doub 161 n y 
C9 H9 FAD sing 162 n n 
C9A N10 FAD sing 163 n n 
N10 C10 FAD sing 164 n n 
N10 C1' FAD sing 165 n n 
C1' C2' FAD sing 166 n n 
C1' "H1'1" FAD sing 167 n n 
C1' "H1'2" FAD sing 168 n n 
C2' O2' FAD sing 169 n n 
C2' C3' FAD sing 170 n n 
C2' H2' FAD sing 171 n n 
O2' HO2' FAD sing 172 n n 
C3' O3' FAD sing 173 n n 
C3' C4' FAD sing 174 n n 
C3' H3' FAD sing 175 n n 
O3' HO3' FAD sing 176 n n 
C4' O4' FAD sing 177 n n 
C4' C5' FAD sing 178 n n 
C4' H4' FAD sing 179 n n 
O4' HO4' FAD sing 180 n n 
C5' O5' FAD sing 181 n n 
C5' "H5'1" FAD sing 182 n n 
C5' "H5'2" FAD sing 183 n n 
O5' P FAD sing 184 n n 
P O1P FAD doub 185 n n 
P O2P FAD sing 186 n n 
P O3P FAD sing 187 n n 
O2P HOP2 FAD sing 188 n n 
#
_atom_sites.entry_id                     4LDK 
_atom_sites.fract_transf_matrix[1][1]    0.019648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012858 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 301 300 FAD FAD . 
C 3 NA A 1 302 409 NA NA . 
D 4 HOH A 1 401 302 HOH HOH . 
D 4 HOH A 2 402 303 HOH HOH . 
D 4 HOH A 3 403 304 HOH HOH . 
D 4 HOH A 4 404 305 HOH HOH . 
D 4 HOH A 5 405 307 HOH HOH . 
D 4 HOH A 6 406 309 HOH HOH . 
D 4 HOH A 7 407 310 HOH HOH . 
D 4 HOH A 8 408 311 HOH HOH . 
D 4 HOH A 9 409 313 HOH HOH . 
D 4 HOH A 10 410 315 HOH HOH . 
D 4 HOH A 11 411 316 HOH HOH . 
D 4 HOH A 12 412 319 HOH HOH . 
D 4 HOH A 13 413 323 HOH HOH . 
D 4 HOH A 14 414 324 HOH HOH . 
D 4 HOH A 15 415 326 HOH HOH . 
D 4 HOH A 16 416 328 HOH HOH . 
D 4 HOH A 17 417 329 HOH HOH . 
D 4 HOH A 18 418 331 HOH HOH . 
D 4 HOH A 19 419 332 HOH HOH . 
D 4 HOH A 20 420 333 HOH HOH . 
D 4 HOH A 21 421 334 HOH HOH . 
D 4 HOH A 22 422 335 HOH HOH . 
D 4 HOH A 23 423 337 HOH HOH . 
D 4 HOH A 24 424 338 HOH HOH . 
D 4 HOH A 25 425 339 HOH HOH . 
D 4 HOH A 26 426 340 HOH HOH . 
D 4 HOH A 27 427 341 HOH HOH . 
D 4 HOH A 28 428 343 HOH HOH . 
D 4 HOH A 29 429 347 HOH HOH . 
D 4 HOH A 30 430 350 HOH HOH . 
D 4 HOH A 31 431 352 HOH HOH . 
D 4 HOH A 32 432 353 HOH HOH . 
D 4 HOH A 33 433 363 HOH HOH . 
D 4 HOH A 34 434 365 HOH HOH . 
D 4 HOH A 35 435 366 HOH HOH . 
D 4 HOH A 36 436 369 HOH HOH . 
D 4 HOH A 37 437 373 HOH HOH . 
D 4 HOH A 38 438 379 HOH HOH . 
D 4 HOH A 39 439 383 HOH HOH . 
D 4 HOH A 40 440 384 HOH HOH . 
D 4 HOH A 41 441 385 HOH HOH . 
D 4 HOH A 42 442 390 HOH HOH . 
D 4 HOH A 43 443 394 HOH HOH . 
D 4 HOH A 44 444 397 HOH HOH . 
D 4 HOH A 45 445 398 HOH HOH . 
D 4 HOH A 46 446 399 HOH HOH . 
D 4 HOH A 47 447 400 HOH HOH . 
D 4 HOH A 48 448 401 HOH HOH . 
D 4 HOH A 49 449 403 HOH HOH . 
D 4 HOH A 50 450 404 HOH HOH . 
D 4 HOH A 51 451 405 HOH HOH . 
D 4 HOH A 52 452 406 HOH HOH . 
D 4 HOH A 53 453 407 HOH HOH . 
D 4 HOH A 54 454 409 HOH HOH . 
D 4 HOH A 55 455 408 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -6.85 -9.524 -7.612 1 21.18 ? PA FAD 301 A 1 
HETATM 2 O O1A FAD . . . B 2 -5.449 -9.739 -8.157 1 19.93 ? O1A FAD 301 A 1 
HETATM 3 O O2A FAD . . . B 2 -7.368 -10.352 -6.468 1 20.87 ? O2A FAD 301 A 1 
HETATM 4 O O5B FAD . . . B 2 -7.807 -9.622 -8.892 1 20.59 ? O5B FAD 301 A 1 
HETATM 5 C C5B FAD . . . B 2 -7.463 -9.074 -10.166 1 16.63 ? C5B FAD 301 A 1 
HETATM 6 C C4B FAD . . . B 2 -8.758 -8.664 -10.909 1 19.82 ? C4B FAD 301 A 1 
HETATM 7 O O4B FAD . . . B 2 -9.58 -9.827 -11.137 1 21.02 ? O4B FAD 301 A 1 
HETATM 8 C C3B FAD . . . B 2 -9.666 -7.675 -10.16 1 23.14 ? C3B FAD 301 A 1 
HETATM 9 O O3B FAD . . . B 2 -9.257 -6.322 -10.411 1 25.07 ? O3B FAD 301 A 1 
HETATM 10 C C2B FAD . . . B 2 -11.068 -7.983 -10.617 1 20.23 ? C2B FAD 301 A 1 
HETATM 11 O O2B FAD . . . B 2 -11.248 -7.224 -11.81 1 19.12 ? O2B FAD 301 A 1 
HETATM 12 C C1B FAD . . . B 2 -10.974 -9.45 -11.044 1 17.98 ? C1B FAD 301 A 1 
HETATM 13 N N9A FAD . . . B 2 -11.557 -10.318 -10.033 1 18.23 ? N9A FAD 301 A 1 
HETATM 14 C C8A FAD . . . B 2 -11.542 -10.169 -8.672 1 15.9 ? C8A FAD 301 A 1 
HETATM 15 N N7A FAD . . . B 2 -12.176 -11.289 -8.168 1 19.94 ? N7A FAD 301 A 1 
HETATM 16 C C5A FAD . . . B 2 -12.545 -12.087 -9.209 1 17.79 ? C5A FAD 301 A 1 
HETATM 17 C C6A FAD . . . B 2 -13.241 -13.322 -9.272 1 15.78 ? C6A FAD 301 A 1 
HETATM 18 N N6A FAD . . . B 2 -13.624 -13.899 -8.093 1 14.44 ? N6A FAD 301 A 1 
HETATM 19 N N1A FAD . . . B 2 -13.454 -13.896 -10.457 1 19.85 ? N1A FAD 301 A 1 
HETATM 20 C C2A FAD . . . B 2 -13.033 -13.311 -11.604 1 16.26 ? C2A FAD 301 A 1 
HETATM 21 N N3A FAD . . . B 2 -12.402 -12.124 -11.59 1 16.01 ? N3A FAD 301 A 1 
HETATM 22 C C4A FAD . . . B 2 -12.13 -11.495 -10.374 1 17.6 ? C4A FAD 301 A 1 
HETATM 23 N N1 FAD . . . B 2 -2.439 -13.018 -1.704 1 24.59 ? N1 FAD 301 A 1 
HETATM 24 C C2 FAD . . . B 2 -2.368 -13.08 -0.321 1 29.39 ? C2 FAD 301 A 1 
HETATM 25 O O2 FAD . . . B 2 -2.061 -11.976 0.382 1 26.63 ? O2 FAD 301 A 1 
HETATM 26 N N3 FAD . . . B 2 -2.577 -14.229 0.344 1 25.96 ? N3 FAD 301 A 1 
HETATM 27 C C4 FAD . . . B 2 -2.835 -15.35 -0.352 1 29.12 ? C4 FAD 301 A 1 
HETATM 28 O O4 FAD . . . B 2 -3.027 -16.486 0.375 1 31.33 ? O4 FAD 301 A 1 
HETATM 29 C C4X FAD . . . B 2 -2.924 -15.327 -1.79 1 26.66 ? C4X FAD 301 A 1 
HETATM 30 N N5 FAD . . . B 2 -3.215 -16.443 -2.539 1 25.84 ? N5 FAD 301 A 1 
HETATM 31 C C5X FAD . . . B 2 -3.263 -16.377 -3.885 1 26.8 ? C5X FAD 301 A 1 
HETATM 32 C C6 FAD . . . B 2 -3.521 -17.502 -4.659 1 29.1 ? C6 FAD 301 A 1 
HETATM 33 C C7 FAD . . . B 2 -3.614 -17.443 -6.067 1 27.02 ? C7 FAD 301 A 1 
HETATM 34 C C7M FAD . . . B 2 -3.886 -18.714 -6.839 1 30.74 ? C7M FAD 301 A 1 
HETATM 35 C C8 FAD . . . B 2 -3.263 -16.193 -6.796 1 27.12 ? C8 FAD 301 A 1 
HETATM 36 C C8M FAD . . . B 2 -3.586 -16.111 -8.291 1 26.8 ? C8M FAD 301 A 1 
HETATM 37 C C9 FAD . . . B 2 -3.123 -14.971 -5.988 1 24.45 ? C9 FAD 301 A 1 
HETATM 38 C C9A FAD . . . B 2 -3.018 -15.074 -4.583 1 24.88 ? C9A FAD 301 A 1 
HETATM 39 N N10 FAD . . . B 2 -2.787 -13.972 -3.757 1 24.77 ? N10 FAD 301 A 1 
HETATM 40 C C10 FAD . . . B 2 -2.689 -14.119 -2.423 1 24.4 ? C10 FAD 301 A 1 
HETATM 41 C C1' FAD . . . B 2 -2.589 -12.613 -4.284 1 21.81 ? C1' FAD 301 A 1 
HETATM 42 C C2' FAD . . . B 2 -3.999 -11.965 -4.229 1 19.1 ? C2' FAD 301 A 1 
HETATM 43 O O2' FAD . . . B 2 -5.125 -12.849 -4.557 1 17.63 ? O2' FAD 301 A 1 
HETATM 44 C C3' FAD . . . B 2 -4.166 -10.757 -5.179 1 19.41 ? C3' FAD 301 A 1 
HETATM 45 O O3' FAD . . . B 2 -3.799 -11.109 -6.513 1 23.11 ? O3' FAD 301 A 1 
HETATM 46 C C4' FAD . . . B 2 -3.442 -9.48 -4.738 1 20.69 ? C4' FAD 301 A 1 
HETATM 47 O O4' FAD . . . B 2 -3.801 -9.21 -3.348 1 22.81 ? O4' FAD 301 A 1 
HETATM 48 C C5' FAD . . . B 2 -3.822 -8.271 -5.571 1 21.74 ? C5' FAD 301 A 1 
HETATM 49 O O5' FAD . . . B 2 -5.221 -8.091 -5.371 1 24.82 ? O5' FAD 301 A 1 
HETATM 50 P P FAD . . . B 2 -6.037 -7.052 -6.314 1 23.9 ? P FAD 301 A 1 
HETATM 51 O O1P FAD . . . B 2 -6.937 -6.173 -5.457 1 26.27 ? O1P FAD 301 A 1 
HETATM 52 O O2P FAD . . . B 2 -5.043 -6.457 -7.262 1 24.43 ? O2P FAD 301 A 1 
HETATM 53 O O3P FAD . . . B 2 -7 -7.946 -7.281 1 24.36 ? O3P FAD 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#