data_4LDL # _model_server_result.job_id xAU7gkceR0W1fF0v7-Nz0w _model_server_result.datetime_utc '2024-11-26 12:09:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ldl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1403}' # _entry.id 4LDL # _exptl.entry_id 4LDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.434 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LDL _cell.length_a 49.67 _cell.length_b 66.48 _cell.length_c 303.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 1106 1_555 A SG CYS 340 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 333 A CYS 1184 1_555 A SG CYS 339 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASN 252 A ASN 1103 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A O CYS 333 A CYS 1184 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc3 A O GLU 336 A GLU 1187 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A O CYS 339 A CYS 1190 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 D NA NA . A NA 1402 1_555 F O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'C17 H32 O4' _chem_comp.formula_weight 300.434 _chem_comp.id 1WV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 O21 1WV sing 1 n n C20 C18 1WV sing 2 n n O19 C18 1WV sing 3 n n C18 C17 1WV sing 4 n n C17 O16 1WV sing 5 n n O16 C14 1WV sing 6 n n C14 O15 1WV doub 7 n n C14 C13 1WV sing 8 n n C13 C12 1WV sing 9 n n C12 C11 1WV sing 10 n n C11 C10 1WV sing 11 n n C10 C09 1WV sing 12 n n C09 C08 1WV sing 13 n n C08 C07 1WV doub 14 z n C10 H1 1WV sing 15 n n C13 H2 1WV sing 16 n n C17 H3 1WV sing 17 n n C17 H4 1WV sing 18 n n C20 H5 1WV sing 19 n n C20 H6 1WV sing 20 n n C07 H8 1WV sing 21 n n C08 H10 1WV sing 22 n n C09 H12 1WV sing 23 n n C09 H13 1WV sing 24 n n C11 H14 1WV sing 25 n n C12 H15 1WV sing 26 n n C18 H16 1WV sing 27 n n O19 H17 1WV sing 28 n n O21 H18 1WV sing 29 n n C07 C1 1WV sing 30 n n C1 C2 1WV sing 31 n n C2 C3 1WV sing 32 n n C3 C4 1WV sing 33 n n C4 C5 1WV sing 34 n n C5 C6 1WV sing 35 n n C10 H7 1WV sing 36 n n C13 H9 1WV sing 37 n n C11 H11 1WV sing 38 n n C12 H19 1WV sing 39 n n C1 H20 1WV sing 40 n n C1 H21 1WV sing 41 n n C2 H22 1WV sing 42 n n C2 H23 1WV sing 43 n n C3 H24 1WV sing 44 n n C3 H25 1WV sing 45 n n C4 H26 1WV sing 46 n n C4 H27 1WV sing 47 n n C5 H28 1WV sing 48 n n C5 H29 1WV sing 49 n n C6 H30 1WV sing 50 n n C6 H31 1WV sing 51 n n C6 H32 1WV sing 52 n n # _atom_sites.entry_id 4LDL _atom_sites.fract_transf_matrix[1][1] 0.020133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 XQC A 1 1401 1 XQC XQC . D 4 NA A 1 1402 1 NA NA . E 5 1WV A 1 1403 1 1WV 1WV . F 6 HOH A 1 1501 1 HOH HOH . F 6 HOH A 2 1502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 1WV . . . E 5 -13.605 -21.491 -50.627 1 97.37 ? C10 1WV 1403 A 1 HETATM 2 C C13 1WV . . . E 5 -12.435 -20.635 -54.201 1 108.76 ? C13 1WV 1403 A 1 HETATM 3 C C17 1WV . . . E 5 -12.607 -21.502 -57.826 1 115.9 ? C17 1WV 1403 A 1 HETATM 4 C C20 1WV . . . E 5 -14.085 -22.821 -59.361 1 114.99 ? C20 1WV 1403 A 1 HETATM 5 C C07 1WV . . . E 5 -13.207 -22.476 -47.468 1 89.85 ? C07 1WV 1403 A 1 HETATM 6 C C08 1WV . . . E 5 -14.193 -21.561 -48.199 1 94.25 ? C08 1WV 1403 A 1 HETATM 7 C C09 1WV . . . E 5 -13.582 -20.706 -49.313 1 96.58 ? C09 1WV 1403 A 1 HETATM 8 C C11 1WV . . . E 5 -12.996 -20.652 -51.755 1 97.96 ? C11 1WV 1403 A 1 HETATM 9 C C12 1WV . . . E 5 -13.035 -21.457 -53.058 1 104.28 ? C12 1WV 1403 A 1 HETATM 10 C C14 1WV . . . E 5 -12.484 -21.448 -55.499 1 112.56 ? C14 1WV 1403 A 1 HETATM 11 O O15 1WV . . . E 5 -12.439 -22.677 -55.473 1 115.09 ? O15 1WV 1403 A 1 HETATM 12 O O16 1WV . . . E 5 -12.551 -20.7 -56.638 1 113.95 ? O16 1WV 1403 A 1 HETATM 13 C C18 1WV . . . E 5 -14.045 -21.968 -58.09 1 115.52 ? C18 1WV 1403 A 1 HETATM 14 O O19 1WV . . . E 5 -14.897 -20.832 -58.257 1 112.01 ? O19 1WV 1403 A 1 HETATM 15 O O21 1WV . . . E 5 -13.242 -23.965 -59.204 1 114.01 ? O21 1WV 1403 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #