data_4LDN # _model_server_result.job_id XsSijhnnQ8ysrIm2SJI9_A _model_server_result.datetime_utc '2025-03-04 17:51:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ldn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 4LDN # _exptl.entry_id 4LDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LDN _cell.length_a 163.115 _cell.length_b 163.115 _cell.length_c 45.339 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 45.339 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 45.339 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 45.339 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 22 A SER 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N SER 24 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LEU 40 A LEU 18 1_555 A N MSE 41 A MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 41 A MSE 19 1_555 A N PRO 42 A PRO 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale5 A C GLY 67 A GLY 45 1_555 A N MSE 68 A MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 68 A MSE 46 1_555 A N LEU 69 A LEU 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale7 A C VAL 82 A VAL 60 1_555 A N MSE 83 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 83 A MSE 61 1_555 A N GLY 84 A GLY 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C GLY 86 A GLY 64 1_555 A N MSE 87 A MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale10 A C MSE 87 A MSE 65 1_555 A N GLY 88 A GLY 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale11 A C LEU 99 A LEU 77 1_555 A N MSE 100 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 100 A MSE 78 1_555 A N THR 101 A THR 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale13 A C LYS 137 A LYS 115 1_555 A N MSE 138 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 A C MSE 138 A MSE 116 1_555 A N ASN 139 A ASN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 A C ASN 155 A ASN 133 1_555 A N MSE 156 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale16 A C MSE 156 A MSE 134 1_555 A N LEU 157 A LEU 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale17 A C ASP 191 A ASP 169 1_555 A N MSE 192 A MSE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 A C MSE 192 A MSE 170 1_555 A N MSE 193 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 A C MSE 193 A MSE 171 1_555 A N ALA 194 A ALA 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 A C GLU 202 A GLU 180 1_555 A N MSE 203 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale21 A C MSE 203 A MSE 181 1_555 A N GLU 204 A GLU 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale22 A C GLU 246 A GLU 224 1_555 A N MSE 247 A MSE 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale23 A C MSE 247 A MSE 225 1_555 A N ILE 248 A ILE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4LDN _atom_sites.fract_transf_matrix[1][1] 0.006131 _atom_sites.fract_transf_matrix[1][2] 0.00354 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 301 1 PO4 PO4 . C 2 PO4 A 1 302 2 PO4 PO4 . D 3 EDO A 1 303 1 EDO EDO . E 3 EDO A 1 304 2 EDO EDO . F 3 EDO A 1 305 3 EDO EDO . G 3 EDO A 1 306 4 EDO EDO . H 3 EDO A 1 307 5 EDO EDO . I 4 HOH A 1 401 1 HOH HOH . I 4 HOH A 2 402 2 HOH HOH . I 4 HOH A 3 403 3 HOH HOH . I 4 HOH A 4 404 4 HOH HOH . I 4 HOH A 5 405 5 HOH HOH . I 4 HOH A 6 406 6 HOH HOH . I 4 HOH A 7 407 7 HOH HOH . I 4 HOH A 8 408 8 HOH HOH . I 4 HOH A 9 409 9 HOH HOH . I 4 HOH A 10 410 10 HOH HOH . I 4 HOH A 11 411 11 HOH HOH . I 4 HOH A 12 412 12 HOH HOH . I 4 HOH A 13 413 13 HOH HOH . I 4 HOH A 14 414 14 HOH HOH . I 4 HOH A 15 415 15 HOH HOH . I 4 HOH A 16 416 16 HOH HOH . I 4 HOH A 17 417 17 HOH HOH . I 4 HOH A 18 418 18 HOH HOH . I 4 HOH A 19 419 19 HOH HOH . I 4 HOH A 20 420 20 HOH HOH . I 4 HOH A 21 421 21 HOH HOH . I 4 HOH A 22 422 22 HOH HOH . I 4 HOH A 23 423 23 HOH HOH . I 4 HOH A 24 424 24 HOH HOH . I 4 HOH A 25 425 25 HOH HOH . I 4 HOH A 26 426 26 HOH HOH . I 4 HOH A 27 427 27 HOH HOH . I 4 HOH A 28 428 28 HOH HOH . I 4 HOH A 29 429 29 HOH HOH . I 4 HOH A 30 430 30 HOH HOH . I 4 HOH A 31 431 31 HOH HOH . I 4 HOH A 32 432 32 HOH HOH . I 4 HOH A 33 433 33 HOH HOH . I 4 HOH A 34 434 34 HOH HOH . I 4 HOH A 35 435 35 HOH HOH . I 4 HOH A 36 436 36 HOH HOH . I 4 HOH A 37 437 37 HOH HOH . I 4 HOH A 38 438 38 HOH HOH . I 4 HOH A 39 439 39 HOH HOH . I 4 HOH A 40 440 40 HOH HOH . I 4 HOH A 41 441 41 HOH HOH . I 4 HOH A 42 442 42 HOH HOH . I 4 HOH A 43 443 43 HOH HOH . I 4 HOH A 44 444 44 HOH HOH . I 4 HOH A 45 445 45 HOH HOH . I 4 HOH A 46 446 46 HOH HOH . I 4 HOH A 47 447 47 HOH HOH . I 4 HOH A 48 448 48 HOH HOH . I 4 HOH A 49 449 49 HOH HOH . I 4 HOH A 50 450 50 HOH HOH . I 4 HOH A 51 451 51 HOH HOH . I 4 HOH A 52 452 52 HOH HOH . I 4 HOH A 53 453 53 HOH HOH . I 4 HOH A 54 454 54 HOH HOH . I 4 HOH A 55 455 55 HOH HOH . I 4 HOH A 56 456 56 HOH HOH . I 4 HOH A 57 457 57 HOH HOH . I 4 HOH A 58 458 58 HOH HOH . I 4 HOH A 59 459 59 HOH HOH . I 4 HOH A 60 460 60 HOH HOH . I 4 HOH A 61 461 61 HOH HOH . I 4 HOH A 62 462 62 HOH HOH . I 4 HOH A 63 463 63 HOH HOH . I 4 HOH A 64 464 64 HOH HOH . I 4 HOH A 65 465 65 HOH HOH . I 4 HOH A 66 466 66 HOH HOH . I 4 HOH A 67 467 67 HOH HOH . I 4 HOH A 68 468 68 HOH HOH . I 4 HOH A 69 469 69 HOH HOH . I 4 HOH A 70 470 70 HOH HOH . I 4 HOH A 71 471 71 HOH HOH . I 4 HOH A 72 472 72 HOH HOH . I 4 HOH A 73 473 73 HOH HOH . I 4 HOH A 74 474 74 HOH HOH . I 4 HOH A 75 475 75 HOH HOH . I 4 HOH A 76 476 76 HOH HOH . I 4 HOH A 77 477 77 HOH HOH . I 4 HOH A 78 478 78 HOH HOH . I 4 HOH A 79 479 79 HOH HOH . I 4 HOH A 80 480 80 HOH HOH . I 4 HOH A 81 481 81 HOH HOH . I 4 HOH A 82 482 82 HOH HOH . I 4 HOH A 83 483 83 HOH HOH . I 4 HOH A 84 484 84 HOH HOH . I 4 HOH A 85 485 85 HOH HOH . I 4 HOH A 86 486 86 HOH HOH . I 4 HOH A 87 487 87 HOH HOH . I 4 HOH A 88 488 88 HOH HOH . I 4 HOH A 89 489 89 HOH HOH . I 4 HOH A 90 490 90 HOH HOH . I 4 HOH A 91 491 91 HOH HOH . I 4 HOH A 92 492 92 HOH HOH . I 4 HOH A 93 493 93 HOH HOH . I 4 HOH A 94 494 94 HOH HOH . I 4 HOH A 95 495 95 HOH HOH . I 4 HOH A 96 496 96 HOH HOH . I 4 HOH A 97 497 97 HOH HOH . I 4 HOH A 98 498 98 HOH HOH . I 4 HOH A 99 499 99 HOH HOH . I 4 HOH A 100 500 100 HOH HOH . I 4 HOH A 101 501 101 HOH HOH . I 4 HOH A 102 502 102 HOH HOH . I 4 HOH A 103 503 103 HOH HOH . I 4 HOH A 104 504 104 HOH HOH . I 4 HOH A 105 505 105 HOH HOH . I 4 HOH A 106 506 106 HOH HOH . I 4 HOH A 107 507 107 HOH HOH . I 4 HOH A 108 508 108 HOH HOH . I 4 HOH A 109 509 109 HOH HOH . I 4 HOH A 110 510 110 HOH HOH . I 4 HOH A 111 511 111 HOH HOH . I 4 HOH A 112 512 112 HOH HOH . I 4 HOH A 113 513 113 HOH HOH . I 4 HOH A 114 514 114 HOH HOH . I 4 HOH A 115 515 115 HOH HOH . I 4 HOH A 116 516 116 HOH HOH . I 4 HOH A 117 517 117 HOH HOH . I 4 HOH A 118 518 118 HOH HOH . I 4 HOH A 119 519 119 HOH HOH . I 4 HOH A 120 520 120 HOH HOH . I 4 HOH A 121 521 121 HOH HOH . I 4 HOH A 122 522 122 HOH HOH . I 4 HOH A 123 523 123 HOH HOH . I 4 HOH A 124 524 124 HOH HOH . I 4 HOH A 125 525 125 HOH HOH . I 4 HOH A 126 526 126 HOH HOH . I 4 HOH A 127 527 127 HOH HOH . I 4 HOH A 128 528 128 HOH HOH . I 4 HOH A 129 529 129 HOH HOH . I 4 HOH A 130 530 130 HOH HOH . I 4 HOH A 131 531 131 HOH HOH . I 4 HOH A 132 532 132 HOH HOH . I 4 HOH A 133 533 133 HOH HOH . I 4 HOH A 134 534 134 HOH HOH . I 4 HOH A 135 535 135 HOH HOH . I 4 HOH A 136 536 136 HOH HOH . I 4 HOH A 137 537 137 HOH HOH . I 4 HOH A 138 538 138 HOH HOH . I 4 HOH A 139 539 139 HOH HOH . I 4 HOH A 140 540 140 HOH HOH . I 4 HOH A 141 541 141 HOH HOH . I 4 HOH A 142 542 142 HOH HOH . I 4 HOH A 143 543 144 HOH HOH . I 4 HOH A 144 544 145 HOH HOH . I 4 HOH A 145 545 147 HOH HOH . I 4 HOH A 146 546 148 HOH HOH . I 4 HOH A 147 547 149 HOH HOH . I 4 HOH A 148 548 150 HOH HOH . I 4 HOH A 149 549 151 HOH HOH . I 4 HOH A 150 550 152 HOH HOH . I 4 HOH A 151 551 153 HOH HOH . I 4 HOH A 152 552 154 HOH HOH . I 4 HOH A 153 553 155 HOH HOH . I 4 HOH A 154 554 156 HOH HOH . I 4 HOH A 155 555 157 HOH HOH . I 4 HOH A 156 556 158 HOH HOH . I 4 HOH A 157 557 159 HOH HOH . I 4 HOH A 158 558 160 HOH HOH . I 4 HOH A 159 559 161 HOH HOH . I 4 HOH A 160 560 162 HOH HOH . I 4 HOH A 161 561 163 HOH HOH . I 4 HOH A 162 562 164 HOH HOH . I 4 HOH A 163 563 165 HOH HOH . I 4 HOH A 164 564 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 16.908 27.488 23.282 0.5 15.57 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 3 16.938 27.603 24.707 0.5 16.2 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 3 16.624 28.825 22.647 0.5 16.23 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 3 16.133 28.613 21.287 0.5 16.4 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #