data_4LDO # _model_server_result.job_id F6_facwnH8Bl0L03Ad6lTA _model_server_result.datetime_utc '2024-10-24 04:26:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ldo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1402}' # _entry.id 4LDO # _exptl.entry_id 4LDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 183.204 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-EPINEPHRINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LDO _cell.length_a 49.67 _cell.length_b 66.48 _cell.length_c 303.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 1106 1_555 A SG CYS 340 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 333 A CYS 1184 1_555 A SG CYS 339 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASN 10 A ASN 861 1_555 F NA NA . A NA 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc2 A OD1 ASN 252 A ASN 1103 1_555 E NA NA . A NA 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A O CYS 333 A CYS 1184 1_555 E NA NA . A NA 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 A O GLU 336 A GLU 1187 1_555 E NA NA . A NA 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A O CYS 339 A CYS 1190 1_555 E NA NA . A NA 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 E NA NA . A NA 1403 1_555 G O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C9 H13 N O3' _chem_comp.formula_weight 183.204 _chem_comp.id ALE _chem_comp.mon_nstd_flag . _chem_comp.name L-EPINEPHRINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADRENALINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ALE sing 65 n y C1 C6 ALE doub 66 n y C1 C7 ALE sing 67 n n C2 C3 ALE doub 68 n y C3 C4 ALE sing 69 n y C3 O1 ALE sing 70 n n C4 C5 ALE doub 71 n y C4 O2 ALE sing 72 n n C5 C6 ALE sing 73 n y O3 C7 ALE sing 74 n n C9 N1 ALE sing 75 n n N1 C8 ALE sing 76 n n C8 C7 ALE sing 77 n n C2 H2 ALE sing 78 n n C6 H6 ALE sing 79 n n C7 H7 ALE sing 80 n n O1 H1 ALE sing 81 n n C5 H5 ALE sing 82 n n O2 HA ALE sing 83 n n O3 H3 ALE sing 84 n n C9 H91C ALE sing 85 n n C9 H92C ALE sing 86 n n C9 H93C ALE sing 87 n n N1 HB ALE sing 88 n n C8 H81C ALE sing 89 n n C8 H82C ALE sing 90 n n # _atom_sites.entry_id 4LDO _atom_sites.fract_transf_matrix[1][1] 0.020133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1WV A 1 1401 1 1WV 1WV . D 4 ALE A 1 1402 1 ALE XQC . E 5 NA A 1 1403 1 NA NA . F 5 NA A 1 1404 2 NA NA . G 6 HOH A 1 1501 3 HOH HOH . G 6 HOH A 2 1502 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ALE . . . D 4 -1.597 -12.703 -48.312 1 82.9 ? C1 ALE 1402 A 1 HETATM 2 C C2 ALE . . . D 4 -0.421 -12.868 -49.038 1 92.28 ? C2 ALE 1402 A 1 HETATM 3 C C3 ALE . . . D 4 0.781 -12.434 -48.492 1 95.92 ? C3 ALE 1402 A 1 HETATM 4 C C4 ALE . . . D 4 0.812 -11.844 -47.237 1 92.28 ? C4 ALE 1402 A 1 HETATM 5 C C5 ALE . . . D 4 -0.358 -11.677 -46.506 1 86.87 ? C5 ALE 1402 A 1 HETATM 6 C C6 ALE . . . D 4 -1.563 -12.11 -47.052 1 82.92 ? C6 ALE 1402 A 1 HETATM 7 O O1 ALE . . . D 4 1.969 -12.561 -49.142 1 91.95 ? O1 ALE 1402 A 1 HETATM 8 O O2 ALE . . . D 4 2.029 -11.448 -46.775 1 89.58 ? O2 ALE 1402 A 1 HETATM 9 O O3 ALE . . . D 4 -3.829 -13.119 -47.854 1 73.05 ? O3 ALE 1402 A 1 HETATM 10 C C9 ALE . . . D 4 -4.834 -11.777 -51.725 1 107.66 ? C9 ALE 1402 A 1 HETATM 11 N N1 ALE . . . D 4 -4.479 -12.665 -50.609 1 102.87 ? N1 ALE 1402 A 1 HETATM 12 C C8 ALE . . . D 4 -3.207 -12.227 -50.017 1 96.53 ? C8 ALE 1402 A 1 HETATM 13 C C7 ALE . . . D 4 -2.805 -13.135 -48.853 1 82.45 ? C7 ALE 1402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #