data_4LDV # _model_server_result.job_id n8CRpsy7ZTQmL24I35Q3yg _model_server_result.datetime_utc '2024-11-09 23:33:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ldv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":410}' # _entry.id 4LDV # _exptl.entry_id 4LDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LDV _cell.length_a 88.362 _cell.length_b 126.256 _cell.length_c 83.672 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -41.836 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 4LDV _atom_sites.fract_transf_matrix[1][1] 0.011317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 425 IOD IOD . C 3 CL A 1 402 426 CL CL . D 3 CL A 1 403 427 CL CL . E 3 CL A 1 404 428 CL CL . F 3 CL A 1 405 429 CL CL . G 3 CL A 1 406 430 CL CL . H 3 CL A 1 407 431 CL CL . I 3 CL A 1 408 432 CL CL . J 4 FMT A 1 409 433 FMT FMT . K 4 FMT A 1 410 434 FMT FMT . L 4 FMT A 1 411 435 FMT FMT . M 4 FMT A 1 412 436 FMT FMT . N 4 FMT A 1 413 437 FMT FMT . O 5 HOH A 1 501 3 HOH HOH . O 5 HOH A 2 502 5 HOH HOH . O 5 HOH A 3 503 6 HOH HOH . O 5 HOH A 4 504 7 HOH HOH . O 5 HOH A 5 505 8 HOH HOH . O 5 HOH A 6 506 9 HOH HOH . O 5 HOH A 7 507 10 HOH HOH . O 5 HOH A 8 508 11 HOH HOH . O 5 HOH A 9 509 12 HOH HOH . O 5 HOH A 10 510 14 HOH HOH . O 5 HOH A 11 511 15 HOH HOH . O 5 HOH A 12 512 17 HOH HOH . O 5 HOH A 13 513 18 HOH HOH . O 5 HOH A 14 514 19 HOH HOH . O 5 HOH A 15 515 20 HOH HOH . O 5 HOH A 16 516 25 HOH HOH . O 5 HOH A 17 517 26 HOH HOH . O 5 HOH A 18 518 28 HOH HOH . O 5 HOH A 19 519 29 HOH HOH . O 5 HOH A 20 520 30 HOH HOH . O 5 HOH A 21 521 31 HOH HOH . O 5 HOH A 22 522 32 HOH HOH . O 5 HOH A 23 523 33 HOH HOH . O 5 HOH A 24 524 35 HOH HOH . O 5 HOH A 25 525 36 HOH HOH . O 5 HOH A 26 526 37 HOH HOH . O 5 HOH A 27 527 38 HOH HOH . O 5 HOH A 28 528 39 HOH HOH . O 5 HOH A 29 529 40 HOH HOH . O 5 HOH A 30 530 41 HOH HOH . O 5 HOH A 31 531 43 HOH HOH . O 5 HOH A 32 532 45 HOH HOH . O 5 HOH A 33 533 47 HOH HOH . O 5 HOH A 34 534 48 HOH HOH . O 5 HOH A 35 535 49 HOH HOH . O 5 HOH A 36 536 50 HOH HOH . O 5 HOH A 37 537 51 HOH HOH . O 5 HOH A 38 538 54 HOH HOH . O 5 HOH A 39 539 55 HOH HOH . O 5 HOH A 40 540 57 HOH HOH . O 5 HOH A 41 541 59 HOH HOH . O 5 HOH A 42 542 60 HOH HOH . O 5 HOH A 43 543 61 HOH HOH . O 5 HOH A 44 544 62 HOH HOH . O 5 HOH A 45 545 63 HOH HOH . O 5 HOH A 46 546 64 HOH HOH . O 5 HOH A 47 547 65 HOH HOH . O 5 HOH A 48 548 66 HOH HOH . O 5 HOH A 49 549 74 HOH HOH . O 5 HOH A 50 550 76 HOH HOH . O 5 HOH A 51 551 79 HOH HOH . O 5 HOH A 52 552 86 HOH HOH . O 5 HOH A 53 553 87 HOH HOH . O 5 HOH A 54 554 88 HOH HOH . O 5 HOH A 55 555 90 HOH HOH . O 5 HOH A 56 556 97 HOH HOH . O 5 HOH A 57 557 98 HOH HOH . O 5 HOH A 58 558 100 HOH HOH . O 5 HOH A 59 559 101 HOH HOH . O 5 HOH A 60 560 103 HOH HOH . O 5 HOH A 61 561 104 HOH HOH . O 5 HOH A 62 562 105 HOH HOH . O 5 HOH A 63 563 107 HOH HOH . O 5 HOH A 64 564 108 HOH HOH . O 5 HOH A 65 565 109 HOH HOH . O 5 HOH A 66 566 112 HOH HOH . O 5 HOH A 67 567 114 HOH HOH . O 5 HOH A 68 568 115 HOH HOH . O 5 HOH A 69 569 116 HOH HOH . O 5 HOH A 70 570 119 HOH HOH . O 5 HOH A 71 571 120 HOH HOH . O 5 HOH A 72 572 124 HOH HOH . O 5 HOH A 73 573 127 HOH HOH . O 5 HOH A 74 574 133 HOH HOH . O 5 HOH A 75 575 135 HOH HOH . O 5 HOH A 76 576 136 HOH HOH . O 5 HOH A 77 577 137 HOH HOH . O 5 HOH A 78 578 138 HOH HOH . O 5 HOH A 79 579 139 HOH HOH . O 5 HOH A 80 580 144 HOH HOH . O 5 HOH A 81 581 145 HOH HOH . O 5 HOH A 82 582 146 HOH HOH . O 5 HOH A 83 583 147 HOH HOH . O 5 HOH A 84 584 157 HOH HOH . O 5 HOH A 85 585 159 HOH HOH . O 5 HOH A 86 586 163 HOH HOH . O 5 HOH A 87 587 165 HOH HOH . O 5 HOH A 88 588 166 HOH HOH . O 5 HOH A 89 589 167 HOH HOH . O 5 HOH A 90 590 169 HOH HOH . O 5 HOH A 91 591 170 HOH HOH . O 5 HOH A 92 592 174 HOH HOH . O 5 HOH A 93 593 175 HOH HOH . O 5 HOH A 94 594 176 HOH HOH . O 5 HOH A 95 595 177 HOH HOH . O 5 HOH A 96 596 178 HOH HOH . O 5 HOH A 97 597 180 HOH HOH . O 5 HOH A 98 598 181 HOH HOH . O 5 HOH A 99 599 182 HOH HOH . O 5 HOH A 100 600 183 HOH HOH . O 5 HOH A 101 601 184 HOH HOH . O 5 HOH A 102 602 185 HOH HOH . O 5 HOH A 103 603 186 HOH HOH . O 5 HOH A 104 604 187 HOH HOH . O 5 HOH A 105 605 188 HOH HOH . O 5 HOH A 106 606 189 HOH HOH . O 5 HOH A 107 607 191 HOH HOH . O 5 HOH A 108 608 192 HOH HOH . O 5 HOH A 109 609 193 HOH HOH . O 5 HOH A 110 610 194 HOH HOH . O 5 HOH A 111 611 196 HOH HOH . O 5 HOH A 112 612 198 HOH HOH . O 5 HOH A 113 613 199 HOH HOH . O 5 HOH A 114 614 200 HOH HOH . O 5 HOH A 115 615 201 HOH HOH . O 5 HOH A 116 616 203 HOH HOH . O 5 HOH A 117 617 204 HOH HOH . O 5 HOH A 118 618 205 HOH HOH . O 5 HOH A 119 619 206 HOH HOH . O 5 HOH A 120 620 207 HOH HOH . O 5 HOH A 121 621 208 HOH HOH . O 5 HOH A 122 622 210 HOH HOH . O 5 HOH A 123 623 211 HOH HOH . O 5 HOH A 124 624 212 HOH HOH . O 5 HOH A 125 625 213 HOH HOH . O 5 HOH A 126 626 214 HOH HOH . O 5 HOH A 127 627 217 HOH HOH . O 5 HOH A 128 628 218 HOH HOH . O 5 HOH A 129 629 219 HOH HOH . O 5 HOH A 130 630 221 HOH HOH . O 5 HOH A 131 631 222 HOH HOH . O 5 HOH A 132 632 223 HOH HOH . O 5 HOH A 133 633 224 HOH HOH . O 5 HOH A 134 634 225 HOH HOH . O 5 HOH A 135 635 226 HOH HOH . O 5 HOH A 136 636 227 HOH HOH . O 5 HOH A 137 637 228 HOH HOH . O 5 HOH A 138 638 230 HOH HOH . O 5 HOH A 139 639 232 HOH HOH . O 5 HOH A 140 640 233 HOH HOH . O 5 HOH A 141 641 234 HOH HOH . O 5 HOH A 142 642 235 HOH HOH . O 5 HOH A 143 643 236 HOH HOH . O 5 HOH A 144 644 238 HOH HOH . O 5 HOH A 145 645 239 HOH HOH . O 5 HOH A 146 646 240 HOH HOH . O 5 HOH A 147 647 242 HOH HOH . O 5 HOH A 148 648 245 HOH HOH . O 5 HOH A 149 649 246 HOH HOH . O 5 HOH A 150 650 247 HOH HOH . O 5 HOH A 151 651 248 HOH HOH . O 5 HOH A 152 652 249 HOH HOH . O 5 HOH A 153 653 250 HOH HOH . O 5 HOH A 154 654 251 HOH HOH . O 5 HOH A 155 655 252 HOH HOH . O 5 HOH A 156 656 254 HOH HOH . O 5 HOH A 157 657 255 HOH HOH . O 5 HOH A 158 658 256 HOH HOH . O 5 HOH A 159 659 257 HOH HOH . O 5 HOH A 160 660 258 HOH HOH . O 5 HOH A 161 661 259 HOH HOH . O 5 HOH A 162 662 260 HOH HOH . O 5 HOH A 163 663 262 HOH HOH . O 5 HOH A 164 664 263 HOH HOH . O 5 HOH A 165 665 264 HOH HOH . O 5 HOH A 166 666 265 HOH HOH . O 5 HOH A 167 667 266 HOH HOH . O 5 HOH A 168 668 267 HOH HOH . O 5 HOH A 169 669 270 HOH HOH . O 5 HOH A 170 670 271 HOH HOH . O 5 HOH A 171 671 272 HOH HOH . O 5 HOH A 172 672 273 HOH HOH . O 5 HOH A 173 673 274 HOH HOH . O 5 HOH A 174 674 276 HOH HOH . O 5 HOH A 175 675 277 HOH HOH . O 5 HOH A 176 676 278 HOH HOH . O 5 HOH A 177 677 280 HOH HOH . O 5 HOH A 178 678 281 HOH HOH . O 5 HOH A 179 679 282 HOH HOH . O 5 HOH A 180 680 283 HOH HOH . O 5 HOH A 181 681 286 HOH HOH . O 5 HOH A 182 682 287 HOH HOH . O 5 HOH A 183 683 289 HOH HOH . O 5 HOH A 184 684 290 HOH HOH . O 5 HOH A 185 685 295 HOH HOH . O 5 HOH A 186 686 296 HOH HOH . O 5 HOH A 187 687 298 HOH HOH . O 5 HOH A 188 688 299 HOH HOH . O 5 HOH A 189 689 304 HOH HOH . O 5 HOH A 190 690 305 HOH HOH . O 5 HOH A 191 691 306 HOH HOH . O 5 HOH A 192 692 308 HOH HOH . O 5 HOH A 193 693 309 HOH HOH . O 5 HOH A 194 694 310 HOH HOH . O 5 HOH A 195 695 311 HOH HOH . O 5 HOH A 196 696 312 HOH HOH . O 5 HOH A 197 697 313 HOH HOH . O 5 HOH A 198 698 314 HOH HOH . O 5 HOH A 199 699 315 HOH HOH . O 5 HOH A 200 700 316 HOH HOH . O 5 HOH A 201 701 317 HOH HOH . O 5 HOH A 202 702 318 HOH HOH . O 5 HOH A 203 703 319 HOH HOH . O 5 HOH A 204 704 320 HOH HOH . O 5 HOH A 205 705 321 HOH HOH . O 5 HOH A 206 706 322 HOH HOH . O 5 HOH A 207 707 323 HOH HOH . O 5 HOH A 208 708 324 HOH HOH . O 5 HOH A 209 709 325 HOH HOH . O 5 HOH A 210 710 326 HOH HOH . O 5 HOH A 211 711 327 HOH HOH . O 5 HOH A 212 712 328 HOH HOH . O 5 HOH A 213 713 329 HOH HOH . O 5 HOH A 214 714 331 HOH HOH . O 5 HOH A 215 715 334 HOH HOH . O 5 HOH A 216 716 335 HOH HOH . O 5 HOH A 217 717 338 HOH HOH . O 5 HOH A 218 718 339 HOH HOH . O 5 HOH A 219 719 340 HOH HOH . O 5 HOH A 220 720 341 HOH HOH . O 5 HOH A 221 721 343 HOH HOH . O 5 HOH A 222 722 344 HOH HOH . O 5 HOH A 223 723 345 HOH HOH . O 5 HOH A 224 724 346 HOH HOH . O 5 HOH A 225 725 347 HOH HOH . O 5 HOH A 226 726 348 HOH HOH . O 5 HOH A 227 727 349 HOH HOH . O 5 HOH A 228 728 350 HOH HOH . O 5 HOH A 229 729 351 HOH HOH . O 5 HOH A 230 730 352 HOH HOH . O 5 HOH A 231 731 353 HOH HOH . O 5 HOH A 232 732 354 HOH HOH . O 5 HOH A 233 733 355 HOH HOH . O 5 HOH A 234 734 356 HOH HOH . O 5 HOH A 235 735 357 HOH HOH . O 5 HOH A 236 736 358 HOH HOH . O 5 HOH A 237 737 359 HOH HOH . O 5 HOH A 238 738 360 HOH HOH . O 5 HOH A 239 739 361 HOH HOH . O 5 HOH A 240 740 362 HOH HOH . O 5 HOH A 241 741 363 HOH HOH . O 5 HOH A 242 742 364 HOH HOH . O 5 HOH A 243 743 366 HOH HOH . O 5 HOH A 244 744 367 HOH HOH . O 5 HOH A 245 745 368 HOH HOH . O 5 HOH A 246 746 370 HOH HOH . O 5 HOH A 247 747 371 HOH HOH . O 5 HOH A 248 748 372 HOH HOH . O 5 HOH A 249 749 373 HOH HOH . O 5 HOH A 250 750 374 HOH HOH . O 5 HOH A 251 751 375 HOH HOH . O 5 HOH A 252 752 376 HOH HOH . O 5 HOH A 253 753 377 HOH HOH . O 5 HOH A 254 754 378 HOH HOH . O 5 HOH A 255 755 379 HOH HOH . O 5 HOH A 256 756 380 HOH HOH . O 5 HOH A 257 757 381 HOH HOH . O 5 HOH A 258 758 383 HOH HOH . O 5 HOH A 259 759 384 HOH HOH . O 5 HOH A 260 760 385 HOH HOH . O 5 HOH A 261 761 386 HOH HOH . O 5 HOH A 262 762 387 HOH HOH . O 5 HOH A 263 763 388 HOH HOH . O 5 HOH A 264 764 389 HOH HOH . O 5 HOH A 265 765 390 HOH HOH . O 5 HOH A 266 766 391 HOH HOH . O 5 HOH A 267 767 392 HOH HOH . O 5 HOH A 268 768 393 HOH HOH . O 5 HOH A 269 769 394 HOH HOH . O 5 HOH A 270 770 395 HOH HOH . O 5 HOH A 271 771 396 HOH HOH . O 5 HOH A 272 772 397 HOH HOH . O 5 HOH A 273 773 398 HOH HOH . O 5 HOH A 274 774 399 HOH HOH . O 5 HOH A 275 775 400 HOH HOH . O 5 HOH A 276 776 401 HOH HOH . O 5 HOH A 277 777 402 HOH HOH . O 5 HOH A 278 778 403 HOH HOH . O 5 HOH A 279 779 404 HOH HOH . O 5 HOH A 280 780 406 HOH HOH . O 5 HOH A 281 781 407 HOH HOH . O 5 HOH A 282 782 408 HOH HOH . O 5 HOH A 283 783 409 HOH HOH . O 5 HOH A 284 784 410 HOH HOH . O 5 HOH A 285 785 411 HOH HOH . O 5 HOH A 286 786 412 HOH HOH . O 5 HOH A 287 787 413 HOH HOH . O 5 HOH A 288 788 414 HOH HOH . O 5 HOH A 289 789 415 HOH HOH . O 5 HOH A 290 790 416 HOH HOH . O 5 HOH A 291 791 417 HOH HOH . O 5 HOH A 292 792 418 HOH HOH . O 5 HOH A 293 793 419 HOH HOH . O 5 HOH A 294 794 420 HOH HOH . O 5 HOH A 295 795 421 HOH HOH . O 5 HOH A 296 796 422 HOH HOH . O 5 HOH A 297 797 423 HOH HOH . O 5 HOH A 298 798 424 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . K 4 23.748 45.251 -23.196 1 10.19 ? C FMT 410 A 1 HETATM 2 O O1 FMT . . . K 4 24.138 44.844 -22.244 1 22.28 ? O1 FMT 410 A 1 HETATM 3 O O2 FMT . . . K 4 24.491 45.018 -23.932 1 13.5 ? O2 FMT 410 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 3 #