data_4LEA
#
_model_server_result.job_id            3ilrOGHOTBoJbsfE5fEVXA 
_model_server_result.datetime_utc      '2024-10-19 16:42:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4LEA 
#
_exptl.entry_id    4LEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-mannopyranose 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LEA 
_cell.length_a            53.42 
_cell.length_b            162.06 
_cell.length_c            152.52 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BMA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-mannopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BMA sing 70 n n 
C1 O1 BMA sing 71 n n 
C1 O5 BMA sing 72 n n 
C1 H1 BMA sing 73 n n 
C2 C3 BMA sing 74 n n 
C2 O2 BMA sing 75 n n 
C2 H2 BMA sing 76 n n 
C3 C4 BMA sing 77 n n 
C3 O3 BMA sing 78 n n 
C3 H3 BMA sing 79 n n 
C4 C5 BMA sing 80 n n 
C4 O4 BMA sing 81 n n 
C4 H4 BMA sing 82 n n 
C5 C6 BMA sing 83 n n 
C5 O5 BMA sing 84 n n 
C5 H5 BMA sing 85 n n 
C6 O6 BMA sing 86 n n 
C6 H61 BMA sing 87 n n 
C6 H62 BMA sing 88 n n 
O1 HO1 BMA sing 89 n n 
O2 HO2 BMA sing 90 n n 
O3 HO3 BMA sing 91 n n 
O4 HO4 BMA sing 92 n n 
O6 HO6 BMA sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BMA b-D-mannopyranose 'COMMON NAME' GMML 1 
BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4LEA 
_atom_sites.fract_transf_matrix[1][1]    0.01872 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006171 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006557 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BMA A 1 301 256 BMA BMA . 
D 2 BMA A 1 302 257 BMA BMA . 
E 2 BMA A 1 303 258 BMA BMA . 
F 2 BMA A 1 304 259 BMA BMA . 
G 2 BMA A 1 305 257 BMA BMA . 
H 2 BMA B 1 301 256 BMA BMA . 
I 2 BMA B 1 302 258 BMA BMA . 
J 2 BMA B 1 303 259 BMA BMA . 
K 2 BMA B 1 304 260 BMA BMA . 
L 3 HOH A 1 401 1 HOH HOH . 
L 3 HOH A 2 402 4 HOH HOH . 
L 3 HOH A 3 403 6 HOH HOH . 
L 3 HOH A 4 404 8 HOH HOH . 
L 3 HOH A 5 405 10 HOH HOH . 
L 3 HOH A 6 406 12 HOH HOH . 
L 3 HOH A 7 407 14 HOH HOH . 
L 3 HOH A 8 408 15 HOH HOH . 
L 3 HOH A 9 409 16 HOH HOH . 
L 3 HOH A 10 410 17 HOH HOH . 
L 3 HOH A 11 411 18 HOH HOH . 
L 3 HOH A 12 412 20 HOH HOH . 
L 3 HOH A 13 413 25 HOH HOH . 
L 3 HOH A 14 414 26 HOH HOH . 
L 3 HOH A 15 415 27 HOH HOH . 
M 3 HOH B 1 401 2 HOH HOH . 
M 3 HOH B 2 402 5 HOH HOH . 
M 3 HOH B 3 403 7 HOH HOH . 
M 3 HOH B 4 404 19 HOH HOH . 
M 3 HOH B 5 405 22 HOH HOH . 
M 3 HOH B 6 406 23 HOH HOH . 
M 3 HOH B 7 407 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMA . . . D 2 1.49 -41.296 16.343 0.6 52.86 ? C1 BMA 302 A 1 
HETATM 2 C C2 BMA . . . D 2 1.644 -41.447 14.801 0.6 50.99 ? C2 BMA 302 A 1 
HETATM 3 C C3 BMA . . . D 2 3.054 -42.013 14.531 0.6 48.03 ? C3 BMA 302 A 1 
HETATM 4 C C4 BMA . . . D 2 4.1 -41.068 15.132 0.6 47.68 ? C4 BMA 302 A 1 
HETATM 5 C C5 BMA . . . D 2 3.808 -40.816 16.62 0.6 52.84 ? C5 BMA 302 A 1 
HETATM 6 C C6 BMA . . . D 2 4.822 -39.849 17.228 0.6 54.55 ? C6 BMA 302 A 1 
HETATM 7 O O1 BMA . . . D 2 0.214 -40.713 16.103 0.6 58.49 ? O1 BMA 302 A 1 
HETATM 8 O O2 BMA . . . D 2 1.57 -40.252 14.009 0.6 50.13 ? O2 BMA 302 A 1 
HETATM 9 O O3 BMA . . . D 2 3.246 -42.237 13.131 0.6 46.22 ? O3 BMA 302 A 1 
HETATM 10 O O4 BMA . . . D 2 5.398 -41.66 14.999 0.6 44.96 ? O4 BMA 302 A 1 
HETATM 11 O O5 BMA . . . D 2 2.455 -40.339 16.821 0.6 50.83 ? O5 BMA 302 A 1 
HETATM 12 O O6 BMA . . . D 2 4.196 -38.581 17.338 0.6 61.42 ? O6 BMA 302 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           12 
#