data_4LEC # _model_server_result.job_id elmJczxaZ6jMlkWF0rwatQ _model_server_result.datetime_utc '2024-11-16 08:40:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 4LEC # _exptl.entry_id 4LEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LEC _cell.length_a 72.166 _cell.length_b 72.166 _cell.length_c 102.954 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 4LEC _atom_sites.fract_transf_matrix[1][1] 0.013857 _atom_sites.fract_transf_matrix[1][2] 0.008 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 1000 SAH SAH . D 3 UNX A 1 302 1 UNX UNX . E 3 UNX A 1 303 2 UNX UNX . F 3 UNX A 1 304 3 UNX UNX . G 3 UNX A 1 305 10 UNX UNX . H 3 UNX A 1 306 11 UNX UNX . I 2 SAH B 1 301 1000 SAH SAH . J 3 UNX B 1 302 4 UNX UNX . K 3 UNX B 1 303 5 UNX UNX . L 3 UNX B 1 304 6 UNX UNX . M 3 UNX B 1 305 7 UNX UNX . N 3 UNX B 1 306 8 UNX UNX . O 3 UNX B 1 307 9 UNX UNX . P 4 HOH A 1 401 3 HOH HOH . P 4 HOH A 2 402 4 HOH HOH . P 4 HOH A 3 403 5 HOH HOH . P 4 HOH A 4 404 6 HOH HOH . P 4 HOH A 5 405 7 HOH HOH . P 4 HOH A 6 406 10 HOH HOH . P 4 HOH A 7 407 11 HOH HOH . P 4 HOH A 8 408 12 HOH HOH . P 4 HOH A 9 409 15 HOH HOH . P 4 HOH A 10 410 17 HOH HOH . P 4 HOH A 11 411 18 HOH HOH . P 4 HOH A 12 412 21 HOH HOH . P 4 HOH A 13 413 22 HOH HOH . P 4 HOH A 14 414 24 HOH HOH . P 4 HOH A 15 415 26 HOH HOH . P 4 HOH A 16 416 27 HOH HOH . P 4 HOH A 17 417 29 HOH HOH . P 4 HOH A 18 418 30 HOH HOH . P 4 HOH A 19 419 36 HOH HOH . P 4 HOH A 20 420 38 HOH HOH . P 4 HOH A 21 421 39 HOH HOH . P 4 HOH A 22 422 40 HOH HOH . P 4 HOH A 23 423 41 HOH HOH . P 4 HOH A 24 424 42 HOH HOH . P 4 HOH A 25 425 44 HOH HOH . P 4 HOH A 26 426 45 HOH HOH . P 4 HOH A 27 427 46 HOH HOH . P 4 HOH A 28 428 47 HOH HOH . P 4 HOH A 29 429 48 HOH HOH . P 4 HOH A 30 430 49 HOH HOH . P 4 HOH A 31 431 52 HOH HOH . P 4 HOH A 32 432 53 HOH HOH . P 4 HOH A 33 433 56 HOH HOH . P 4 HOH A 34 434 57 HOH HOH . P 4 HOH A 35 435 58 HOH HOH . P 4 HOH A 36 436 59 HOH HOH . P 4 HOH A 37 437 63 HOH HOH . P 4 HOH A 38 438 66 HOH HOH . P 4 HOH A 39 439 69 HOH HOH . P 4 HOH A 40 440 72 HOH HOH . P 4 HOH A 41 441 76 HOH HOH . P 4 HOH A 42 442 77 HOH HOH . P 4 HOH A 43 443 79 HOH HOH . P 4 HOH A 44 444 80 HOH HOH . P 4 HOH A 45 445 81 HOH HOH . P 4 HOH A 46 446 82 HOH HOH . P 4 HOH A 47 447 85 HOH HOH . P 4 HOH A 48 448 86 HOH HOH . P 4 HOH A 49 449 87 HOH HOH . P 4 HOH A 50 450 88 HOH HOH . P 4 HOH A 51 451 89 HOH HOH . P 4 HOH A 52 452 90 HOH HOH . P 4 HOH A 53 453 91 HOH HOH . P 4 HOH A 54 454 93 HOH HOH . P 4 HOH A 55 455 96 HOH HOH . P 4 HOH A 56 456 97 HOH HOH . P 4 HOH A 57 457 98 HOH HOH . P 4 HOH A 58 458 100 HOH HOH . P 4 HOH A 59 459 102 HOH HOH . P 4 HOH A 60 460 104 HOH HOH . P 4 HOH A 61 461 106 HOH HOH . P 4 HOH A 62 462 107 HOH HOH . P 4 HOH A 63 463 108 HOH HOH . P 4 HOH A 64 464 109 HOH HOH . P 4 HOH A 65 465 110 HOH HOH . P 4 HOH A 66 466 111 HOH HOH . P 4 HOH A 67 467 112 HOH HOH . P 4 HOH A 68 468 113 HOH HOH . P 4 HOH A 69 469 114 HOH HOH . P 4 HOH A 70 470 115 HOH HOH . P 4 HOH A 71 471 116 HOH HOH . P 4 HOH A 72 472 117 HOH HOH . P 4 HOH A 73 473 118 HOH HOH . P 4 HOH A 74 474 126 HOH HOH . P 4 HOH A 75 475 127 HOH HOH . Q 4 HOH B 1 401 1 HOH HOH . Q 4 HOH B 2 402 2 HOH HOH . Q 4 HOH B 3 403 8 HOH HOH . Q 4 HOH B 4 404 9 HOH HOH . Q 4 HOH B 5 405 13 HOH HOH . Q 4 HOH B 6 406 14 HOH HOH . Q 4 HOH B 7 407 16 HOH HOH . Q 4 HOH B 8 408 19 HOH HOH . Q 4 HOH B 9 409 20 HOH HOH . Q 4 HOH B 10 410 23 HOH HOH . Q 4 HOH B 11 411 25 HOH HOH . Q 4 HOH B 12 412 28 HOH HOH . Q 4 HOH B 13 413 31 HOH HOH . Q 4 HOH B 14 414 32 HOH HOH . Q 4 HOH B 15 415 33 HOH HOH . Q 4 HOH B 16 416 34 HOH HOH . Q 4 HOH B 17 417 35 HOH HOH . Q 4 HOH B 18 418 37 HOH HOH . Q 4 HOH B 19 419 43 HOH HOH . Q 4 HOH B 20 420 50 HOH HOH . Q 4 HOH B 21 421 51 HOH HOH . Q 4 HOH B 22 422 54 HOH HOH . Q 4 HOH B 23 423 55 HOH HOH . Q 4 HOH B 24 424 60 HOH HOH . Q 4 HOH B 25 425 61 HOH HOH . Q 4 HOH B 26 426 62 HOH HOH . Q 4 HOH B 27 427 64 HOH HOH . Q 4 HOH B 28 428 65 HOH HOH . Q 4 HOH B 29 429 67 HOH HOH . Q 4 HOH B 30 430 68 HOH HOH . Q 4 HOH B 31 431 70 HOH HOH . Q 4 HOH B 32 432 71 HOH HOH . Q 4 HOH B 33 433 73 HOH HOH . Q 4 HOH B 34 434 74 HOH HOH . Q 4 HOH B 35 435 75 HOH HOH . Q 4 HOH B 36 436 78 HOH HOH . Q 4 HOH B 37 437 83 HOH HOH . Q 4 HOH B 38 438 84 HOH HOH . Q 4 HOH B 39 439 92 HOH HOH . Q 4 HOH B 40 440 94 HOH HOH . Q 4 HOH B 41 441 95 HOH HOH . Q 4 HOH B 42 442 99 HOH HOH . Q 4 HOH B 43 443 101 HOH HOH . Q 4 HOH B 44 444 103 HOH HOH . Q 4 HOH B 45 445 105 HOH HOH . Q 4 HOH B 46 446 119 HOH HOH . Q 4 HOH B 47 447 120 HOH HOH . Q 4 HOH B 48 448 121 HOH HOH . Q 4 HOH B 49 449 122 HOH HOH . Q 4 HOH B 50 450 123 HOH HOH . Q 4 HOH B 51 451 124 HOH HOH . Q 4 HOH B 52 452 125 HOH HOH . Q 4 HOH B 53 453 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 2 26.032 -15.403 -16.922 1 38.83 ? N SAH 301 B 1 HETATM 2 C CA SAH . . . I 2 25.431 -15.031 -18.197 1 36.71 ? CA SAH 301 B 1 HETATM 3 C CB SAH . . . I 2 26.313 -15.328 -19.429 1 33.09 ? CB SAH 301 B 1 HETATM 4 C CG SAH . . . I 2 26.574 -16.815 -19.619 1 33.2 ? CG SAH 301 B 1 HETATM 5 S SD SAH . . . I 2 27.535 -16.905 -21.149 1 35.13 ? SD SAH 301 B 1 HETATM 6 C C SAH . . . I 2 24.035 -15.649 -18.42 1 35.86 ? C SAH 301 B 1 HETATM 7 O O SAH . . . I 2 23.769 -16.794 -18.013 1 38.55 ? O SAH 301 B 1 HETATM 8 O OXT SAH . . . I 2 23.219 -14.895 -19.086 1 35.68 ? OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . I 2 29.198 -17.288 -20.538 1 31.52 ? C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . I 2 29.866 -16.031 -20.017 1 32.52 ? C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . I 2 31.194 -16.326 -19.52 1 32.44 ? O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . I 2 30.02 -14.917 -21.063 1 31.95 ? C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . I 2 29.489 -13.673 -20.619 1 33.88 ? O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . I 2 31.533 -14.861 -21.303 1 30.33 ? C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . I 2 32.053 -13.573 -21.596 1 30.48 ? O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . I 2 32.061 -15.295 -19.945 1 30.63 ? C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . I 2 33.432 -15.791 -19.986 1 27.2 ? N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . I 2 33.931 -16.744 -20.837 1 27.83 ? C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . I 2 35.22 -16.947 -20.713 1 30.43 ? N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . I 2 35.595 -16.074 -19.703 1 28.13 ? C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . I 2 36.839 -15.81 -19.089 1 29.62 ? C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . I 2 37.973 -16.434 -19.416 1 31.34 ? N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . I 2 36.874 -14.861 -18.121 1 28.78 ? N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . I 2 35.743 -14.212 -17.811 1 28.78 ? C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . I 2 34.515 -14.38 -18.317 1 29.42 ? N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . I 2 34.505 -15.344 -19.256 1 27.52 ? C4 SAH 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #