data_4LED
#
_model_server_result.job_id            6UAbFB26skUPkKhDYJBg4g 
_model_server_result.datetime_utc      '2024-11-04 23:47:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4led 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    4LED 
#
_exptl.entry_id    4LED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              164.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-rhamnopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LED 
_cell.length_a            52.99 
_cell.length_b            160.65 
_cell.length_c            150.57 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C6 H12 O5' 
_chem_comp.formula_weight    164.156 
_chem_comp.id                XXR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-rhamnopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-rhamnose;6-deoxy-alpha-D-mannopyranose;D-rhamnose;rhamnose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 XXR sing 363 n n 
O5 C5 XXR sing 364 n n 
O5 C1 XXR sing 365 n n 
C5 C6 XXR sing 366 n n 
C5 C4 XXR sing 367 n n 
C1 C2 XXR sing 368 n n 
O4 C4 XXR sing 369 n n 
C4 C3 XXR sing 370 n n 
C3 C2 XXR sing 371 n n 
C3 O3 XXR sing 372 n n 
C2 O2 XXR sing 373 n n 
O4 HO4 XXR sing 374 n n 
C4 H4 XXR sing 375 n n 
C5 H5 XXR sing 376 n n 
C6 H61 XXR sing 377 n n 
C6 H62 XXR sing 378 n n 
C6 H63 XXR sing 379 n n 
C3 H3 XXR sing 380 n n 
O3 HO3 XXR sing 381 n n 
C2 H2 XXR sing 382 n n 
O2 HO2 XXR sing 383 n n 
C1 H1 XXR sing 384 n n 
O1 HO1 XXR sing 385 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
XXR DRhapa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
XXR a-D-rhamnopyranose 'COMMON NAME' GMML 1 
XXR a-D-Rhap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
XXR Rha 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4LED 
_atom_sites.fract_transf_matrix[1][1]    0.018871 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006225 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006641 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XXR A 1 301 2 XXR XXR . 
D 2 XXR A 1 302 3 XXR XXR . 
E 2 XXR A 1 303 6 XXR XXR . 
F 2 XXR B 1 301 1 XXR XXR . 
G 2 XXR B 1 302 4 XXR XXR . 
H 2 XXR B 1 303 5 XXR XXR . 
I 2 XXR B 1 304 7 XXR XXR . 
J 3 HOH A 1 401 1 HOH HOH . 
J 3 HOH A 2 402 4 HOH HOH . 
J 3 HOH A 3 403 7 HOH HOH . 
J 3 HOH A 4 404 8 HOH HOH . 
J 3 HOH A 5 405 9 HOH HOH . 
J 3 HOH A 6 406 10 HOH HOH . 
J 3 HOH A 7 407 11 HOH HOH . 
J 3 HOH A 8 408 12 HOH HOH . 
J 3 HOH A 9 409 16 HOH HOH . 
J 3 HOH A 10 410 17 HOH HOH . 
J 3 HOH A 11 411 19 HOH HOH . 
J 3 HOH A 12 412 21 HOH HOH . 
J 3 HOH A 13 413 24 HOH HOH . 
J 3 HOH A 14 414 25 HOH HOH . 
J 3 HOH A 15 415 26 HOH HOH . 
J 3 HOH A 16 416 27 HOH HOH . 
J 3 HOH A 17 417 28 HOH HOH . 
J 3 HOH A 18 418 29 HOH HOH . 
J 3 HOH A 19 419 30 HOH HOH . 
J 3 HOH A 20 420 31 HOH HOH . 
J 3 HOH A 21 421 35 HOH HOH . 
J 3 HOH A 22 422 37 HOH HOH . 
J 3 HOH A 23 423 38 HOH HOH . 
J 3 HOH A 24 424 39 HOH HOH . 
J 3 HOH A 25 425 40 HOH HOH . 
J 3 HOH A 26 426 41 HOH HOH . 
J 3 HOH A 27 427 42 HOH HOH . 
J 3 HOH A 28 428 44 HOH HOH . 
J 3 HOH A 29 429 45 HOH HOH . 
J 3 HOH A 30 430 47 HOH HOH . 
J 3 HOH A 31 431 48 HOH HOH . 
J 3 HOH A 32 432 49 HOH HOH . 
J 3 HOH A 33 433 50 HOH HOH . 
J 3 HOH A 34 434 51 HOH HOH . 
J 3 HOH A 35 435 52 HOH HOH . 
J 3 HOH A 36 436 53 HOH HOH . 
J 3 HOH A 37 437 54 HOH HOH . 
J 3 HOH A 38 438 55 HOH HOH . 
J 3 HOH A 39 439 56 HOH HOH . 
J 3 HOH A 40 440 58 HOH HOH . 
J 3 HOH A 41 441 59 HOH HOH . 
J 3 HOH A 42 442 63 HOH HOH . 
J 3 HOH A 43 443 64 HOH HOH . 
J 3 HOH A 44 444 65 HOH HOH . 
J 3 HOH A 45 445 66 HOH HOH . 
J 3 HOH A 46 446 74 HOH HOH . 
J 3 HOH A 47 447 75 HOH HOH . 
J 3 HOH A 48 448 80 HOH HOH . 
J 3 HOH A 49 449 83 HOH HOH . 
J 3 HOH A 50 450 84 HOH HOH . 
J 3 HOH A 51 451 86 HOH HOH . 
J 3 HOH A 52 452 88 HOH HOH . 
J 3 HOH A 53 453 89 HOH HOH . 
J 3 HOH A 54 454 90 HOH HOH . 
J 3 HOH A 55 455 91 HOH HOH . 
J 3 HOH A 56 456 93 HOH HOH . 
K 3 HOH B 1 401 2 HOH HOH . 
K 3 HOH B 2 402 3 HOH HOH . 
K 3 HOH B 3 403 14 HOH HOH . 
K 3 HOH B 4 404 20 HOH HOH . 
K 3 HOH B 5 405 22 HOH HOH . 
K 3 HOH B 6 406 32 HOH HOH . 
K 3 HOH B 7 407 33 HOH HOH . 
K 3 HOH B 8 408 34 HOH HOH . 
K 3 HOH B 9 409 36 HOH HOH . 
K 3 HOH B 10 410 46 HOH HOH . 
K 3 HOH B 11 411 57 HOH HOH . 
K 3 HOH B 12 412 61 HOH HOH . 
K 3 HOH B 13 413 62 HOH HOH . 
K 3 HOH B 14 414 68 HOH HOH . 
K 3 HOH B 15 415 71 HOH HOH . 
K 3 HOH B 16 416 72 HOH HOH . 
K 3 HOH B 17 417 73 HOH HOH . 
K 3 HOH B 18 418 76 HOH HOH . 
K 3 HOH B 19 419 77 HOH HOH . 
K 3 HOH B 20 420 78 HOH HOH . 
K 3 HOH B 21 421 79 HOH HOH . 
K 3 HOH B 22 422 81 HOH HOH . 
K 3 HOH B 23 423 82 HOH HOH . 
K 3 HOH B 24 424 85 HOH HOH . 
K 3 HOH B 25 425 87 HOH HOH . 
K 3 HOH B 26 426 92 HOH HOH . 
K 3 HOH B 27 427 94 HOH HOH . 
K 3 HOH B 28 428 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 XXR . . . E 2 11.662 45.004 1.866 0.5 41.76 ? O4 XXR 303 A 1 
HETATM 2 C C4 XXR . . . E 2 10.572 44.385 2.556 0.5 41.09 ? C4 XXR 303 A 1 
HETATM 3 C C5 XXR . . . E 2 11.047 43.623 3.785 0.5 40.09 ? C5 XXR 303 A 1 
HETATM 4 C C6 XXR . . . E 2 11.868 44.504 4.735 0.5 41.69 ? C6 XXR 303 A 1 
HETATM 5 C C3 XXR . . . E 2 10.005 43.399 1.575 0.5 41.44 ? C3 XXR 303 A 1 
HETATM 6 O O3 XXR . . . E 2 9.255 44.059 0.532 0.5 44.36 ? O3 XXR 303 A 1 
HETATM 7 C C2 XXR . . . E 2 9.168 42.338 2.284 0.5 37.89 ? C2 XXR 303 A 1 
HETATM 8 O O2 XXR . . . E 2 7.987 42.242 1.495 0.5 36.44 ? O2 XXR 303 A 1 
HETATM 9 C C1 XXR . . . E 2 8.819 42.633 3.74 0.5 35.54 ? C1 XXR 303 A 1 
HETATM 10 O O5 XXR . . . E 2 9.909 43.15 4.489 0.5 38.86 ? O5 XXR 303 A 1 
HETATM 11 O O1 XXR . . . E 2 8.435 41.434 4.404 0.5 30.04 ? O1 XXR 303 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#