data_4LFH
#
_model_server_result.job_id            xH-eRcvTJKv6cey90oEZnA 
_model_server_result.datetime_utc      '2024-10-30 11:30:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lfh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":302}' 
#
_entry.id    4LFH 
#
_exptl.entry_id    4LFH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LFH 
_cell.length_a            118.534 
_cell.length_b            118.534 
_cell.length_c            89.127 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LFH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 A 1 NAG D 400 NAG 
3 n C NAG 2 A 2 NAG D 401 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 D CYS 26 1_555 A SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
disulf ? disulf2 A SG CYS 140 D CYS 140 1_555 A SG CYS 191 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
disulf ? disulf3 B SG CYS 26 G CYS 26 1_555 B SG CYS 98 G CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? 
covale ? covale1 A ND2 ASN 134 D ASN 134 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4LFH 
_atom_sites.fract_transf_matrix[1][1]    0.008436 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01122 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ACT G 1 301 1 ACT ACT . 
E 5 NA G 1 302 1 NA NA . 
F 5 NA G 1 303 2 NA NA . 
G 6 HOH D 1 501 2 HOH HOH . 
G 6 HOH D 2 502 6 HOH HOH . 
G 6 HOH D 3 503 8 HOH HOH . 
G 6 HOH D 4 504 9 HOH HOH . 
G 6 HOH D 5 505 13 HOH HOH . 
G 6 HOH D 6 506 17 HOH HOH . 
G 6 HOH D 7 507 21 HOH HOH . 
G 6 HOH D 8 508 23 HOH HOH . 
G 6 HOH D 9 509 27 HOH HOH . 
G 6 HOH D 10 510 35 HOH HOH . 
G 6 HOH D 11 511 38 HOH HOH . 
G 6 HOH D 12 512 42 HOH HOH . 
G 6 HOH D 13 513 46 HOH HOH . 
G 6 HOH D 14 514 48 HOH HOH . 
G 6 HOH D 15 515 49 HOH HOH . 
G 6 HOH D 16 516 51 HOH HOH . 
G 6 HOH D 17 517 53 HOH HOH . 
G 6 HOH D 18 518 55 HOH HOH . 
G 6 HOH D 19 519 60 HOH HOH . 
G 6 HOH D 20 520 62 HOH HOH . 
G 6 HOH D 21 521 67 HOH HOH . 
G 6 HOH D 22 522 70 HOH HOH . 
G 6 HOH D 23 523 75 HOH HOH . 
G 6 HOH D 24 524 77 HOH HOH . 
G 6 HOH D 25 525 80 HOH HOH . 
G 6 HOH D 26 526 82 HOH HOH . 
G 6 HOH D 27 527 84 HOH HOH . 
G 6 HOH D 28 528 89 HOH HOH . 
G 6 HOH D 29 529 91 HOH HOH . 
G 6 HOH D 30 530 92 HOH HOH . 
G 6 HOH D 31 531 93 HOH HOH . 
G 6 HOH D 32 532 94 HOH HOH . 
G 6 HOH D 33 533 96 HOH HOH . 
G 6 HOH D 34 534 97 HOH HOH . 
G 6 HOH D 35 535 98 HOH HOH . 
G 6 HOH D 36 536 101 HOH HOH . 
G 6 HOH D 37 537 105 HOH HOH . 
G 6 HOH D 38 538 107 HOH HOH . 
G 6 HOH D 39 539 108 HOH HOH . 
G 6 HOH D 40 540 112 HOH HOH . 
G 6 HOH D 41 541 113 HOH HOH . 
G 6 HOH D 42 542 116 HOH HOH . 
G 6 HOH D 43 543 118 HOH HOH . 
G 6 HOH D 44 544 123 HOH HOH . 
G 6 HOH D 45 545 127 HOH HOH . 
G 6 HOH D 46 546 128 HOH HOH . 
G 6 HOH D 47 547 133 HOH HOH . 
G 6 HOH D 48 548 134 HOH HOH . 
G 6 HOH D 49 549 135 HOH HOH . 
G 6 HOH D 50 550 137 HOH HOH . 
G 6 HOH D 51 551 140 HOH HOH . 
G 6 HOH D 52 552 141 HOH HOH . 
G 6 HOH D 53 553 143 HOH HOH . 
G 6 HOH D 54 554 144 HOH HOH . 
G 6 HOH D 55 555 146 HOH HOH . 
G 6 HOH D 56 556 147 HOH HOH . 
G 6 HOH D 57 557 148 HOH HOH . 
G 6 HOH D 58 558 151 HOH HOH . 
G 6 HOH D 59 559 153 HOH HOH . 
G 6 HOH D 60 560 156 HOH HOH . 
G 6 HOH D 61 561 164 HOH HOH . 
G 6 HOH D 62 562 165 HOH HOH . 
G 6 HOH D 63 563 166 HOH HOH . 
G 6 HOH D 64 564 168 HOH HOH . 
G 6 HOH D 65 565 169 HOH HOH . 
G 6 HOH D 66 566 171 HOH HOH . 
G 6 HOH D 67 567 174 HOH HOH . 
G 6 HOH D 68 568 175 HOH HOH . 
G 6 HOH D 69 569 176 HOH HOH . 
G 6 HOH D 70 570 177 HOH HOH . 
G 6 HOH D 71 571 178 HOH HOH . 
G 6 HOH D 72 572 181 HOH HOH . 
G 6 HOH D 73 573 182 HOH HOH . 
G 6 HOH D 74 574 183 HOH HOH . 
G 6 HOH D 75 575 187 HOH HOH . 
G 6 HOH D 76 576 191 HOH HOH . 
G 6 HOH D 77 577 192 HOH HOH . 
G 6 HOH D 78 578 195 HOH HOH . 
G 6 HOH D 79 579 199 HOH HOH . 
G 6 HOH D 80 580 202 HOH HOH . 
G 6 HOH D 81 581 203 HOH HOH . 
G 6 HOH D 82 582 204 HOH HOH . 
G 6 HOH D 83 583 205 HOH HOH . 
G 6 HOH D 84 584 207 HOH HOH . 
G 6 HOH D 85 585 209 HOH HOH . 
G 6 HOH D 86 586 214 HOH HOH . 
G 6 HOH D 87 587 216 HOH HOH . 
G 6 HOH D 88 588 217 HOH HOH . 
G 6 HOH D 89 589 219 HOH HOH . 
G 6 HOH D 90 590 220 HOH HOH . 
H 6 HOH G 1 401 4 HOH HOH . 
H 6 HOH G 2 402 5 HOH HOH . 
H 6 HOH G 3 403 7 HOH HOH . 
H 6 HOH G 4 404 10 HOH HOH . 
H 6 HOH G 5 405 11 HOH HOH . 
H 6 HOH G 6 406 12 HOH HOH . 
H 6 HOH G 7 407 14 HOH HOH . 
H 6 HOH G 8 408 15 HOH HOH . 
H 6 HOH G 9 409 16 HOH HOH . 
H 6 HOH G 10 410 18 HOH HOH . 
H 6 HOH G 11 411 19 HOH HOH . 
H 6 HOH G 12 412 20 HOH HOH . 
H 6 HOH G 13 413 22 HOH HOH . 
H 6 HOH G 14 414 24 HOH HOH . 
H 6 HOH G 15 415 25 HOH HOH . 
H 6 HOH G 16 416 26 HOH HOH . 
H 6 HOH G 17 417 28 HOH HOH . 
H 6 HOH G 18 418 29 HOH HOH . 
H 6 HOH G 19 419 30 HOH HOH . 
H 6 HOH G 20 420 31 HOH HOH . 
H 6 HOH G 21 421 32 HOH HOH . 
H 6 HOH G 22 422 33 HOH HOH . 
H 6 HOH G 23 423 34 HOH HOH . 
H 6 HOH G 24 424 36 HOH HOH . 
H 6 HOH G 25 425 37 HOH HOH . 
H 6 HOH G 26 426 39 HOH HOH . 
H 6 HOH G 27 427 40 HOH HOH . 
H 6 HOH G 28 428 41 HOH HOH . 
H 6 HOH G 29 429 43 HOH HOH . 
H 6 HOH G 30 430 44 HOH HOH . 
H 6 HOH G 31 431 45 HOH HOH . 
H 6 HOH G 32 432 47 HOH HOH . 
H 6 HOH G 33 433 50 HOH HOH . 
H 6 HOH G 34 434 52 HOH HOH . 
H 6 HOH G 35 435 54 HOH HOH . 
H 6 HOH G 36 436 56 HOH HOH . 
H 6 HOH G 37 437 57 HOH HOH . 
H 6 HOH G 38 438 58 HOH HOH . 
H 6 HOH G 39 439 61 HOH HOH . 
H 6 HOH G 40 440 63 HOH HOH . 
H 6 HOH G 41 441 64 HOH HOH . 
H 6 HOH G 42 442 65 HOH HOH . 
H 6 HOH G 43 443 66 HOH HOH . 
H 6 HOH G 44 444 68 HOH HOH . 
H 6 HOH G 45 445 69 HOH HOH . 
H 6 HOH G 46 446 71 HOH HOH . 
H 6 HOH G 47 447 72 HOH HOH . 
H 6 HOH G 48 448 73 HOH HOH . 
H 6 HOH G 49 449 74 HOH HOH . 
H 6 HOH G 50 450 76 HOH HOH . 
H 6 HOH G 51 451 78 HOH HOH . 
H 6 HOH G 52 452 79 HOH HOH . 
H 6 HOH G 53 453 81 HOH HOH . 
H 6 HOH G 54 454 83 HOH HOH . 
H 6 HOH G 55 455 85 HOH HOH . 
H 6 HOH G 56 456 86 HOH HOH . 
H 6 HOH G 57 457 87 HOH HOH . 
H 6 HOH G 58 458 88 HOH HOH . 
H 6 HOH G 59 459 90 HOH HOH . 
H 6 HOH G 60 460 95 HOH HOH . 
H 6 HOH G 61 461 99 HOH HOH . 
H 6 HOH G 62 462 100 HOH HOH . 
H 6 HOH G 63 463 102 HOH HOH . 
H 6 HOH G 64 464 103 HOH HOH . 
H 6 HOH G 65 465 104 HOH HOH . 
H 6 HOH G 66 466 106 HOH HOH . 
H 6 HOH G 67 467 109 HOH HOH . 
H 6 HOH G 68 468 110 HOH HOH . 
H 6 HOH G 69 469 111 HOH HOH . 
H 6 HOH G 70 470 114 HOH HOH . 
H 6 HOH G 71 471 115 HOH HOH . 
H 6 HOH G 72 472 117 HOH HOH . 
H 6 HOH G 73 473 119 HOH HOH . 
H 6 HOH G 74 474 120 HOH HOH . 
H 6 HOH G 75 475 121 HOH HOH . 
H 6 HOH G 76 476 122 HOH HOH . 
H 6 HOH G 77 477 124 HOH HOH . 
H 6 HOH G 78 478 125 HOH HOH . 
H 6 HOH G 79 479 126 HOH HOH . 
H 6 HOH G 80 480 129 HOH HOH . 
H 6 HOH G 81 481 130 HOH HOH . 
H 6 HOH G 82 482 131 HOH HOH . 
H 6 HOH G 83 483 132 HOH HOH . 
H 6 HOH G 84 484 136 HOH HOH . 
H 6 HOH G 85 485 138 HOH HOH . 
H 6 HOH G 86 486 139 HOH HOH . 
H 6 HOH G 87 487 142 HOH HOH . 
H 6 HOH G 88 488 145 HOH HOH . 
H 6 HOH G 89 489 149 HOH HOH . 
H 6 HOH G 90 490 150 HOH HOH . 
H 6 HOH G 91 491 152 HOH HOH . 
H 6 HOH G 92 492 154 HOH HOH . 
H 6 HOH G 93 493 155 HOH HOH . 
H 6 HOH G 94 494 157 HOH HOH . 
H 6 HOH G 95 495 159 HOH HOH . 
H 6 HOH G 96 496 160 HOH HOH . 
H 6 HOH G 97 497 161 HOH HOH . 
H 6 HOH G 98 498 162 HOH HOH . 
H 6 HOH G 99 499 163 HOH HOH . 
H 6 HOH G 100 500 167 HOH HOH . 
H 6 HOH G 101 501 170 HOH HOH . 
H 6 HOH G 102 502 172 HOH HOH . 
H 6 HOH G 103 503 173 HOH HOH . 
H 6 HOH G 104 504 179 HOH HOH . 
H 6 HOH G 105 505 180 HOH HOH . 
H 6 HOH G 106 506 184 HOH HOH . 
H 6 HOH G 107 507 185 HOH HOH . 
H 6 HOH G 108 508 186 HOH HOH . 
H 6 HOH G 109 509 188 HOH HOH . 
H 6 HOH G 110 510 189 HOH HOH . 
H 6 HOH G 111 511 190 HOH HOH . 
H 6 HOH G 112 512 193 HOH HOH . 
H 6 HOH G 113 513 194 HOH HOH . 
H 6 HOH G 114 514 196 HOH HOH . 
H 6 HOH G 115 515 197 HOH HOH . 
H 6 HOH G 116 516 198 HOH HOH . 
H 6 HOH G 117 517 200 HOH HOH . 
H 6 HOH G 118 518 206 HOH HOH . 
H 6 HOH G 119 519 208 HOH HOH . 
H 6 HOH G 120 520 210 HOH HOH . 
H 6 HOH G 121 521 211 HOH HOH . 
H 6 HOH G 122 522 212 HOH HOH . 
H 6 HOH G 123 523 213 HOH HOH . 
H 6 HOH G 124 524 215 HOH HOH . 
H 6 HOH G 125 525 218 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -13.412 
_atom_site.Cartn_y               -25.993 
_atom_site.Cartn_z               -10.557 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.82 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          G 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#