data_4LFH # _model_server_result.job_id otIQZ-visjHQunXQwn_UXQ _model_server_result.datetime_utc '2024-12-04 22:19:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4LFH # _exptl.entry_id 4LFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LFH _cell.length_a 118.534 _cell.length_b 118.534 _cell.length_c 89.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG D 400 NAG 3 n C NAG 2 A 2 NAG D 401 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 D CYS 26 1_555 A SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? disulf ? disulf2 A SG CYS 140 D CYS 140 1_555 A SG CYS 191 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? disulf ? disulf3 B SG CYS 26 G CYS 26 1_555 B SG CYS 98 G CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? covale ? covale1 A ND2 ASN 134 D ASN 134 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LFH _atom_sites.fract_transf_matrix[1][1] 0.008436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT G 1 301 1 ACT ACT . E 5 NA G 1 302 1 NA NA . F 5 NA G 1 303 2 NA NA . G 6 HOH D 1 501 2 HOH HOH . G 6 HOH D 2 502 6 HOH HOH . G 6 HOH D 3 503 8 HOH HOH . G 6 HOH D 4 504 9 HOH HOH . G 6 HOH D 5 505 13 HOH HOH . G 6 HOH D 6 506 17 HOH HOH . G 6 HOH D 7 507 21 HOH HOH . G 6 HOH D 8 508 23 HOH HOH . G 6 HOH D 9 509 27 HOH HOH . G 6 HOH D 10 510 35 HOH HOH . G 6 HOH D 11 511 38 HOH HOH . G 6 HOH D 12 512 42 HOH HOH . G 6 HOH D 13 513 46 HOH HOH . G 6 HOH D 14 514 48 HOH HOH . G 6 HOH D 15 515 49 HOH HOH . G 6 HOH D 16 516 51 HOH HOH . G 6 HOH D 17 517 53 HOH HOH . G 6 HOH D 18 518 55 HOH HOH . G 6 HOH D 19 519 60 HOH HOH . G 6 HOH D 20 520 62 HOH HOH . G 6 HOH D 21 521 67 HOH HOH . G 6 HOH D 22 522 70 HOH HOH . G 6 HOH D 23 523 75 HOH HOH . G 6 HOH D 24 524 77 HOH HOH . G 6 HOH D 25 525 80 HOH HOH . G 6 HOH D 26 526 82 HOH HOH . G 6 HOH D 27 527 84 HOH HOH . G 6 HOH D 28 528 89 HOH HOH . G 6 HOH D 29 529 91 HOH HOH . G 6 HOH D 30 530 92 HOH HOH . G 6 HOH D 31 531 93 HOH HOH . G 6 HOH D 32 532 94 HOH HOH . G 6 HOH D 33 533 96 HOH HOH . G 6 HOH D 34 534 97 HOH HOH . G 6 HOH D 35 535 98 HOH HOH . G 6 HOH D 36 536 101 HOH HOH . G 6 HOH D 37 537 105 HOH HOH . G 6 HOH D 38 538 107 HOH HOH . G 6 HOH D 39 539 108 HOH HOH . G 6 HOH D 40 540 112 HOH HOH . G 6 HOH D 41 541 113 HOH HOH . G 6 HOH D 42 542 116 HOH HOH . G 6 HOH D 43 543 118 HOH HOH . G 6 HOH D 44 544 123 HOH HOH . G 6 HOH D 45 545 127 HOH HOH . G 6 HOH D 46 546 128 HOH HOH . G 6 HOH D 47 547 133 HOH HOH . G 6 HOH D 48 548 134 HOH HOH . G 6 HOH D 49 549 135 HOH HOH . G 6 HOH D 50 550 137 HOH HOH . G 6 HOH D 51 551 140 HOH HOH . G 6 HOH D 52 552 141 HOH HOH . G 6 HOH D 53 553 143 HOH HOH . G 6 HOH D 54 554 144 HOH HOH . G 6 HOH D 55 555 146 HOH HOH . G 6 HOH D 56 556 147 HOH HOH . G 6 HOH D 57 557 148 HOH HOH . G 6 HOH D 58 558 151 HOH HOH . G 6 HOH D 59 559 153 HOH HOH . G 6 HOH D 60 560 156 HOH HOH . G 6 HOH D 61 561 164 HOH HOH . G 6 HOH D 62 562 165 HOH HOH . G 6 HOH D 63 563 166 HOH HOH . G 6 HOH D 64 564 168 HOH HOH . G 6 HOH D 65 565 169 HOH HOH . G 6 HOH D 66 566 171 HOH HOH . G 6 HOH D 67 567 174 HOH HOH . G 6 HOH D 68 568 175 HOH HOH . G 6 HOH D 69 569 176 HOH HOH . G 6 HOH D 70 570 177 HOH HOH . G 6 HOH D 71 571 178 HOH HOH . G 6 HOH D 72 572 181 HOH HOH . G 6 HOH D 73 573 182 HOH HOH . G 6 HOH D 74 574 183 HOH HOH . G 6 HOH D 75 575 187 HOH HOH . G 6 HOH D 76 576 191 HOH HOH . G 6 HOH D 77 577 192 HOH HOH . G 6 HOH D 78 578 195 HOH HOH . G 6 HOH D 79 579 199 HOH HOH . G 6 HOH D 80 580 202 HOH HOH . G 6 HOH D 81 581 203 HOH HOH . G 6 HOH D 82 582 204 HOH HOH . G 6 HOH D 83 583 205 HOH HOH . G 6 HOH D 84 584 207 HOH HOH . G 6 HOH D 85 585 209 HOH HOH . G 6 HOH D 86 586 214 HOH HOH . G 6 HOH D 87 587 216 HOH HOH . G 6 HOH D 88 588 217 HOH HOH . G 6 HOH D 89 589 219 HOH HOH . G 6 HOH D 90 590 220 HOH HOH . H 6 HOH G 1 401 4 HOH HOH . H 6 HOH G 2 402 5 HOH HOH . H 6 HOH G 3 403 7 HOH HOH . H 6 HOH G 4 404 10 HOH HOH . H 6 HOH G 5 405 11 HOH HOH . H 6 HOH G 6 406 12 HOH HOH . H 6 HOH G 7 407 14 HOH HOH . H 6 HOH G 8 408 15 HOH HOH . H 6 HOH G 9 409 16 HOH HOH . H 6 HOH G 10 410 18 HOH HOH . H 6 HOH G 11 411 19 HOH HOH . H 6 HOH G 12 412 20 HOH HOH . H 6 HOH G 13 413 22 HOH HOH . H 6 HOH G 14 414 24 HOH HOH . H 6 HOH G 15 415 25 HOH HOH . H 6 HOH G 16 416 26 HOH HOH . H 6 HOH G 17 417 28 HOH HOH . H 6 HOH G 18 418 29 HOH HOH . H 6 HOH G 19 419 30 HOH HOH . H 6 HOH G 20 420 31 HOH HOH . H 6 HOH G 21 421 32 HOH HOH . H 6 HOH G 22 422 33 HOH HOH . H 6 HOH G 23 423 34 HOH HOH . H 6 HOH G 24 424 36 HOH HOH . H 6 HOH G 25 425 37 HOH HOH . H 6 HOH G 26 426 39 HOH HOH . H 6 HOH G 27 427 40 HOH HOH . H 6 HOH G 28 428 41 HOH HOH . H 6 HOH G 29 429 43 HOH HOH . H 6 HOH G 30 430 44 HOH HOH . H 6 HOH G 31 431 45 HOH HOH . H 6 HOH G 32 432 47 HOH HOH . H 6 HOH G 33 433 50 HOH HOH . H 6 HOH G 34 434 52 HOH HOH . H 6 HOH G 35 435 54 HOH HOH . H 6 HOH G 36 436 56 HOH HOH . H 6 HOH G 37 437 57 HOH HOH . H 6 HOH G 38 438 58 HOH HOH . H 6 HOH G 39 439 61 HOH HOH . H 6 HOH G 40 440 63 HOH HOH . H 6 HOH G 41 441 64 HOH HOH . H 6 HOH G 42 442 65 HOH HOH . H 6 HOH G 43 443 66 HOH HOH . H 6 HOH G 44 444 68 HOH HOH . H 6 HOH G 45 445 69 HOH HOH . H 6 HOH G 46 446 71 HOH HOH . H 6 HOH G 47 447 72 HOH HOH . H 6 HOH G 48 448 73 HOH HOH . H 6 HOH G 49 449 74 HOH HOH . H 6 HOH G 50 450 76 HOH HOH . H 6 HOH G 51 451 78 HOH HOH . H 6 HOH G 52 452 79 HOH HOH . H 6 HOH G 53 453 81 HOH HOH . H 6 HOH G 54 454 83 HOH HOH . H 6 HOH G 55 455 85 HOH HOH . H 6 HOH G 56 456 86 HOH HOH . H 6 HOH G 57 457 87 HOH HOH . H 6 HOH G 58 458 88 HOH HOH . H 6 HOH G 59 459 90 HOH HOH . H 6 HOH G 60 460 95 HOH HOH . H 6 HOH G 61 461 99 HOH HOH . H 6 HOH G 62 462 100 HOH HOH . H 6 HOH G 63 463 102 HOH HOH . H 6 HOH G 64 464 103 HOH HOH . H 6 HOH G 65 465 104 HOH HOH . H 6 HOH G 66 466 106 HOH HOH . H 6 HOH G 67 467 109 HOH HOH . H 6 HOH G 68 468 110 HOH HOH . H 6 HOH G 69 469 111 HOH HOH . H 6 HOH G 70 470 114 HOH HOH . H 6 HOH G 71 471 115 HOH HOH . H 6 HOH G 72 472 117 HOH HOH . H 6 HOH G 73 473 119 HOH HOH . H 6 HOH G 74 474 120 HOH HOH . H 6 HOH G 75 475 121 HOH HOH . H 6 HOH G 76 476 122 HOH HOH . H 6 HOH G 77 477 124 HOH HOH . H 6 HOH G 78 478 125 HOH HOH . H 6 HOH G 79 479 126 HOH HOH . H 6 HOH G 80 480 129 HOH HOH . H 6 HOH G 81 481 130 HOH HOH . H 6 HOH G 82 482 131 HOH HOH . H 6 HOH G 83 483 132 HOH HOH . H 6 HOH G 84 484 136 HOH HOH . H 6 HOH G 85 485 138 HOH HOH . H 6 HOH G 86 486 139 HOH HOH . H 6 HOH G 87 487 142 HOH HOH . H 6 HOH G 88 488 145 HOH HOH . H 6 HOH G 89 489 149 HOH HOH . H 6 HOH G 90 490 150 HOH HOH . H 6 HOH G 91 491 152 HOH HOH . H 6 HOH G 92 492 154 HOH HOH . H 6 HOH G 93 493 155 HOH HOH . H 6 HOH G 94 494 157 HOH HOH . H 6 HOH G 95 495 159 HOH HOH . H 6 HOH G 96 496 160 HOH HOH . H 6 HOH G 97 497 161 HOH HOH . H 6 HOH G 98 498 162 HOH HOH . H 6 HOH G 99 499 163 HOH HOH . H 6 HOH G 100 500 167 HOH HOH . H 6 HOH G 101 501 170 HOH HOH . H 6 HOH G 102 502 172 HOH HOH . H 6 HOH G 103 503 173 HOH HOH . H 6 HOH G 104 504 179 HOH HOH . H 6 HOH G 105 505 180 HOH HOH . H 6 HOH G 106 506 184 HOH HOH . H 6 HOH G 107 507 185 HOH HOH . H 6 HOH G 108 508 186 HOH HOH . H 6 HOH G 109 509 188 HOH HOH . H 6 HOH G 110 510 189 HOH HOH . H 6 HOH G 111 511 190 HOH HOH . H 6 HOH G 112 512 193 HOH HOH . H 6 HOH G 113 513 194 HOH HOH . H 6 HOH G 114 514 196 HOH HOH . H 6 HOH G 115 515 197 HOH HOH . H 6 HOH G 116 516 198 HOH HOH . H 6 HOH G 117 517 200 HOH HOH . H 6 HOH G 118 518 206 HOH HOH . H 6 HOH G 119 519 208 HOH HOH . H 6 HOH G 120 520 210 HOH HOH . H 6 HOH G 121 521 211 HOH HOH . H 6 HOH G 122 522 212 HOH HOH . H 6 HOH G 123 523 213 HOH HOH . H 6 HOH G 124 524 215 HOH HOH . H 6 HOH G 125 525 218 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -13.412 _atom_site.Cartn_y -25.993 _atom_site.Cartn_z -10.557 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #