data_4LFS # _model_server_result.job_id X9NdTUHCKmBFb-4bu9OT2Q _model_server_result.datetime_utc '2024-11-08 16:51:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 4LFS # _exptl.entry_id 4LFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.51 _cell.angle_gamma 90 _cell.entry_id 4LFS _cell.length_a 30.912 _cell.length_b 51.653 _cell.length_c 21.065 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 14 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21/c 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 17 A CYS 17 1_555 A SG CYS 32 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 95 n n C1 C2 GOL sing 96 n n C1 H11 GOL sing 97 n n C1 H12 GOL sing 98 n n O1 HO1 GOL sing 99 n n C2 O2 GOL sing 100 n n C2 C3 GOL sing 101 n n C2 H2 GOL sing 102 n n O2 HO2 GOL sing 103 n n C3 O3 GOL sing 104 n n C3 H31 GOL sing 105 n n C3 H32 GOL sing 106 n n O3 HO3 GOL sing 107 n n # _atom_sites.entry_id 4LFS _atom_sites.fract_transf_matrix[1][1] 0.03235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008372 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.049036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 101 1 CL CL . C 2 CL A 1 102 1 CL CL . D 2 CL A 1 103 1 CL CL . E 3 GOL A 1 104 1 GOL GOL . F 2 CL A 1 105 1 CL CL . G 4 HOH A 1 201 1 HOH HOH . G 4 HOH A 2 202 2 HOH HOH . G 4 HOH A 3 203 3 HOH HOH . G 4 HOH A 4 204 4 HOH HOH . G 4 HOH A 5 205 5 HOH HOH . G 4 HOH A 6 206 6 HOH HOH . G 4 HOH A 7 207 7 HOH HOH . G 4 HOH A 8 208 8 HOH HOH . G 4 HOH A 9 209 9 HOH HOH . G 4 HOH A 10 210 10 HOH HOH . G 4 HOH A 11 211 11 HOH HOH . G 4 HOH A 12 212 12 HOH HOH . G 4 HOH A 13 213 13 HOH HOH . G 4 HOH A 14 214 14 HOH HOH . G 4 HOH A 15 215 15 HOH HOH . G 4 HOH A 16 216 16 HOH HOH . G 4 HOH A 17 217 17 HOH HOH . G 4 HOH A 18 218 18 HOH HOH . G 4 HOH A 19 219 19 HOH HOH . G 4 HOH A 20 220 20 HOH HOH . G 4 HOH A 21 221 21 HOH HOH . G 4 HOH A 22 222 22 HOH HOH . G 4 HOH A 23 223 23 HOH HOH . G 4 HOH A 24 224 24 HOH HOH . G 4 HOH A 25 225 25 HOH HOH . G 4 HOH A 26 226 26 HOH HOH . G 4 HOH A 27 227 27 HOH HOH . G 4 HOH A 28 228 28 HOH HOH . G 4 HOH A 29 229 29 HOH HOH . G 4 HOH A 30 230 30 HOH HOH . G 4 HOH A 31 231 31 HOH HOH . G 4 HOH A 32 232 32 HOH HOH . G 4 HOH A 33 233 33 HOH HOH . G 4 HOH A 34 234 34 HOH HOH . G 4 HOH A 35 235 35 HOH HOH . G 4 HOH A 36 236 36 HOH HOH . G 4 HOH A 37 237 37 HOH HOH . G 4 HOH A 38 238 38 HOH HOH . G 4 HOH A 39 239 39 HOH HOH . G 4 HOH A 40 240 40 HOH HOH . G 4 HOH A 41 241 41 HOH HOH . G 4 HOH A 42 242 42 HOH HOH . G 4 HOH A 43 243 43 HOH HOH . G 4 HOH A 44 244 44 HOH HOH . G 4 HOH A 45 245 45 HOH HOH . G 4 HOH A 46 246 46 HOH HOH . G 4 HOH A 47 247 47 HOH HOH . G 4 HOH A 48 248 48 HOH HOH . G 4 HOH A 49 249 49 HOH HOH . G 4 HOH A 50 250 50 HOH HOH . G 4 HOH A 51 251 51 HOH HOH . G 4 HOH A 52 252 52 HOH HOH . G 4 HOH A 53 253 53 HOH HOH . G 4 HOH A 54 254 54 HOH HOH . G 4 HOH A 55 255 55 HOH HOH . G 4 HOH A 56 256 56 HOH HOH . G 4 HOH A 57 257 57 HOH HOH . G 4 HOH A 58 258 58 HOH HOH . G 4 HOH A 59 259 59 HOH HOH . G 4 HOH A 60 260 60 HOH HOH . G 4 HOH A 61 261 61 HOH HOH . G 4 HOH A 62 262 62 HOH HOH . G 4 HOH A 63 263 63 HOH HOH . G 4 HOH A 64 264 64 HOH HOH . G 4 HOH A 65 265 65 HOH HOH . G 4 HOH A 66 266 66 HOH HOH . G 4 HOH A 67 267 67 HOH HOH . G 4 HOH A 68 268 68 HOH HOH . G 4 HOH A 69 269 69 HOH HOH . G 4 HOH A 70 270 70 HOH HOH . G 4 HOH A 71 271 71 HOH HOH . G 4 HOH A 72 272 72 HOH HOH . G 4 HOH A 73 273 74 HOH HOH . G 4 HOH A 74 274 77 HOH HOH . G 4 HOH A 75 275 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -17.075 -28.515 -0.411 0.5 6.7 ? C1 GOL 104 A 1 HETATM 2 O O1 GOL . . . E 3 -16.904 -29.599 -1.294 0.5 6.44 ? O1 GOL 104 A 1 HETATM 3 C C2 GOL . . . E 3 -15.779 -28.297 0.368 0.5 6.3 ? C2 GOL 104 A 1 HETATM 4 O O2 GOL . . . E 3 -15.335 -29.516 0.929 0.5 6.06 ? O2 GOL 104 A 1 HETATM 5 C C3 GOL . . . E 3 -14.694 -27.755 -0.555 0.5 7.22 ? C3 GOL 104 A 1 HETATM 6 O O3 GOL . . . E 3 -13.492 -27.5 0.152 0.5 6.37 ? O3 GOL 104 A 1 HETATM 7 H H11 GOL . . . E 3 -17.89 -28.727 0.281 0.5 3.6 ? H11 GOL 104 A 1 HETATM 8 H H12 GOL . . . E 3 -17.328 -27.616 -0.974 0.5 4.18 ? H12 GOL 104 A 1 HETATM 9 H HO1 GOL . . . E 3 -17.717 -29.712 -1.827 0.5 25.62 ? HO1 GOL 104 A 1 HETATM 10 H H2 GOL . . . E 3 -15.961 -27.571 1.16 0.5 5.82 ? H2 GOL 104 A 1 HETATM 11 H HO2 GOL . . . E 3 -15.086 -30.132 0.209 0.5 13.19 ? HO2 GOL 104 A 1 HETATM 12 H H31 GOL . . . E 3 -15.042 -26.833 -1.019 0.5 22.7 ? H31 GOL 104 A 1 HETATM 13 H H32 GOL . . . E 3 -14.5 -28.476 -1.35 0.5 10.97 ? H32 GOL 104 A 1 HETATM 14 H HO3 GOL . . . E 3 -13.678 -27.479 1.115 0.5 14.25 ? HO3 GOL 104 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #