data_4LFV # _model_server_result.job_id -4S0C-zwLN8vnxvBWpVKXg _model_server_result.datetime_utc '2024-11-24 20:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4LFV # _exptl.entry_id 4LFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LFV _cell.length_a 111.02 _cell.length_b 111.02 _cell.length_c 67.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 125 F ASP 103 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A OD1 ASP 125 F ASP 103 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 A OD2 ASP 129 F ASP 107 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 A OD2 ASP 129 F ASP 107 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 A OD2 ASP 265 F ASP 243 1_555 G MG MG . F MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 B O3 YS4 . F YS4 401 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 B O6 YS4 . F YS4 401 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 B O3 YS4 . F YS4 401 1_555 F MG MG . F MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc9 B O5 YS4 . F YS4 401 1_555 G MG MG . F MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc10 B O4 YS4 . F YS4 401 1_555 G MG MG . F MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 E MG MG . F MG 404 1_555 I O HOH . F HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc12 E MG MG . F MG 404 1_555 I O HOH . F HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc13 E MG MG . F MG 404 1_555 I O HOH . F HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc14 F MG MG . F MG 405 1_555 I O HOH . F HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc15 F MG MG . F MG 405 1_555 I O HOH . F HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc16 G MG MG . F MG 406 1_555 I O HOH . F HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc17 G MG MG . F MG 406 1_555 I O HOH . F HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc18 G MG MG . F MG 406 1_555 I O HOH . F HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LFV _atom_sites.fract_transf_matrix[1][1] 0.009007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YS4 F 1 401 1 YS4 YS4 . C 3 PO4 F 1 402 1 PO4 PO4 . D 3 PO4 F 1 403 2 PO4 PO4 . E 4 MG F 1 404 1 MG MG . F 4 MG F 1 405 1 MG MG . G 4 MG F 1 406 1 MG MG . H 5 CL F 1 407 1 CL CL . I 6 HOH F 1 501 1 HOH HOH . I 6 HOH F 2 502 2 HOH HOH . I 6 HOH F 3 503 3 HOH HOH . I 6 HOH F 4 504 4 HOH HOH . I 6 HOH F 5 505 5 HOH HOH . I 6 HOH F 6 506 6 HOH HOH . I 6 HOH F 7 507 7 HOH HOH . I 6 HOH F 8 508 8 HOH HOH . I 6 HOH F 9 509 9 HOH HOH . I 6 HOH F 10 510 10 HOH HOH . I 6 HOH F 11 511 11 HOH HOH . I 6 HOH F 12 512 12 HOH HOH . I 6 HOH F 13 513 13 HOH HOH . I 6 HOH F 14 514 14 HOH HOH . I 6 HOH F 15 515 15 HOH HOH . I 6 HOH F 16 516 16 HOH HOH . I 6 HOH F 17 517 17 HOH HOH . I 6 HOH F 18 518 18 HOH HOH . I 6 HOH F 19 519 19 HOH HOH . I 6 HOH F 20 520 20 HOH HOH . I 6 HOH F 21 521 21 HOH HOH . I 6 HOH F 22 522 22 HOH HOH . I 6 HOH F 23 523 23 HOH HOH . I 6 HOH F 24 524 24 HOH HOH . I 6 HOH F 25 525 25 HOH HOH . I 6 HOH F 26 526 26 HOH HOH . I 6 HOH F 27 527 27 HOH HOH . I 6 HOH F 28 528 28 HOH HOH . I 6 HOH F 29 529 29 HOH HOH . I 6 HOH F 30 530 30 HOH HOH . I 6 HOH F 31 531 31 HOH HOH . I 6 HOH F 32 532 32 HOH HOH . I 6 HOH F 33 533 33 HOH HOH . I 6 HOH F 34 534 34 HOH HOH . I 6 HOH F 35 535 35 HOH HOH . I 6 HOH F 36 536 36 HOH HOH . I 6 HOH F 37 537 37 HOH HOH . I 6 HOH F 38 538 38 HOH HOH . I 6 HOH F 39 539 39 HOH HOH . I 6 HOH F 40 540 40 HOH HOH . I 6 HOH F 41 541 41 HOH HOH . I 6 HOH F 42 542 42 HOH HOH . I 6 HOH F 43 543 43 HOH HOH . I 6 HOH F 44 544 44 HOH HOH . I 6 HOH F 45 545 45 HOH HOH . I 6 HOH F 46 546 46 HOH HOH . I 6 HOH F 47 547 47 HOH HOH . I 6 HOH F 48 548 48 HOH HOH . I 6 HOH F 49 549 49 HOH HOH . I 6 HOH F 50 550 50 HOH HOH . I 6 HOH F 51 551 51 HOH HOH . I 6 HOH F 52 552 52 HOH HOH . I 6 HOH F 53 553 53 HOH HOH . I 6 HOH F 54 554 54 HOH HOH . I 6 HOH F 55 555 55 HOH HOH . I 6 HOH F 56 556 56 HOH HOH . I 6 HOH F 57 557 57 HOH HOH . I 6 HOH F 58 558 58 HOH HOH . I 6 HOH F 59 559 59 HOH HOH . I 6 HOH F 60 560 60 HOH HOH . I 6 HOH F 61 561 61 HOH HOH . I 6 HOH F 62 562 62 HOH HOH . I 6 HOH F 63 563 63 HOH HOH . I 6 HOH F 64 564 64 HOH HOH . I 6 HOH F 65 565 65 HOH HOH . I 6 HOH F 66 566 66 HOH HOH . I 6 HOH F 67 567 67 HOH HOH . I 6 HOH F 68 568 68 HOH HOH . I 6 HOH F 69 569 69 HOH HOH . I 6 HOH F 70 570 70 HOH HOH . I 6 HOH F 71 571 71 HOH HOH . I 6 HOH F 72 572 72 HOH HOH . I 6 HOH F 73 573 73 HOH HOH . I 6 HOH F 74 574 74 HOH HOH . I 6 HOH F 75 575 75 HOH HOH . I 6 HOH F 76 576 76 HOH HOH . I 6 HOH F 77 577 77 HOH HOH . I 6 HOH F 78 578 78 HOH HOH . I 6 HOH F 79 579 79 HOH HOH . I 6 HOH F 80 580 80 HOH HOH . I 6 HOH F 81 581 81 HOH HOH . I 6 HOH F 82 582 82 HOH HOH . I 6 HOH F 83 583 83 HOH HOH . I 6 HOH F 84 584 84 HOH HOH . I 6 HOH F 85 585 85 HOH HOH . I 6 HOH F 86 586 86 HOH HOH . I 6 HOH F 87 587 87 HOH HOH . I 6 HOH F 88 588 88 HOH HOH . I 6 HOH F 89 589 89 HOH HOH . I 6 HOH F 90 590 90 HOH HOH . I 6 HOH F 91 591 91 HOH HOH . I 6 HOH F 92 592 92 HOH HOH . I 6 HOH F 93 593 93 HOH HOH . I 6 HOH F 94 594 94 HOH HOH . I 6 HOH F 95 595 95 HOH HOH . I 6 HOH F 96 596 96 HOH HOH . I 6 HOH F 97 597 97 HOH HOH . I 6 HOH F 98 598 98 HOH HOH . I 6 HOH F 99 599 99 HOH HOH . I 6 HOH F 100 600 100 HOH HOH . I 6 HOH F 101 601 101 HOH HOH . I 6 HOH F 102 602 102 HOH HOH . I 6 HOH F 103 603 103 HOH HOH . I 6 HOH F 104 604 104 HOH HOH . I 6 HOH F 105 605 105 HOH HOH . I 6 HOH F 106 606 106 HOH HOH . I 6 HOH F 107 607 107 HOH HOH . I 6 HOH F 108 608 108 HOH HOH . I 6 HOH F 109 609 109 HOH HOH . I 6 HOH F 110 610 110 HOH HOH . I 6 HOH F 111 611 111 HOH HOH . I 6 HOH F 112 612 112 HOH HOH . I 6 HOH F 113 613 113 HOH HOH . I 6 HOH F 114 614 114 HOH HOH . I 6 HOH F 115 615 115 HOH HOH . I 6 HOH F 116 616 116 HOH HOH . I 6 HOH F 117 617 117 HOH HOH . I 6 HOH F 118 618 118 HOH HOH . I 6 HOH F 119 619 119 HOH HOH . I 6 HOH F 120 620 120 HOH HOH . I 6 HOH F 121 621 121 HOH HOH . I 6 HOH F 122 622 122 HOH HOH . I 6 HOH F 123 623 123 HOH HOH . I 6 HOH F 124 624 124 HOH HOH . I 6 HOH F 125 625 125 HOH HOH . I 6 HOH F 126 626 126 HOH HOH . I 6 HOH F 127 627 127 HOH HOH . I 6 HOH F 128 628 128 HOH HOH . I 6 HOH F 129 629 129 HOH HOH . I 6 HOH F 130 630 130 HOH HOH . I 6 HOH F 131 631 131 HOH HOH . I 6 HOH F 132 632 132 HOH HOH . I 6 HOH F 133 633 133 HOH HOH . I 6 HOH F 134 634 134 HOH HOH . I 6 HOH F 135 635 135 HOH HOH . I 6 HOH F 136 636 136 HOH HOH . I 6 HOH F 137 637 137 HOH HOH . I 6 HOH F 138 638 138 HOH HOH . I 6 HOH F 139 639 139 HOH HOH . I 6 HOH F 140 640 140 HOH HOH . I 6 HOH F 141 641 141 HOH HOH . I 6 HOH F 142 642 142 HOH HOH . I 6 HOH F 143 643 143 HOH HOH . I 6 HOH F 144 644 144 HOH HOH . I 6 HOH F 145 645 145 HOH HOH . I 6 HOH F 146 646 146 HOH HOH . I 6 HOH F 147 647 147 HOH HOH . I 6 HOH F 148 648 148 HOH HOH . I 6 HOH F 149 649 149 HOH HOH . I 6 HOH F 150 650 150 HOH HOH . I 6 HOH F 151 651 151 HOH HOH . I 6 HOH F 152 652 152 HOH HOH . I 6 HOH F 153 653 153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.409 _atom_site.Cartn_y 34.673 _atom_site.Cartn_z -7.018 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 405 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 1 #