data_4LG4 # _model_server_result.job_id vYPAdsv3efcCEeM2G8FHhg _model_server_result.datetime_utc '2025-01-10 21:03:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 4LG4 # _exptl.entry_id 4LG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.61 _cell.angle_gamma 90 _cell.entry_id 4LG4 _cell.length_a 227.179 _cell.length_b 69.771 _cell.length_c 148.082 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,J,K 1 1 B,L 2 1 C,M 3 1 D,N 4 1 E,O 5 1 F,P 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4LG4 _atom_sites.fract_transf_matrix[1][1] 0.004402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001482 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 401 101 GOL GOL . H 2 GOL A 1 402 102 GOL GOL . I 2 GOL A 1 403 103 GOL GOL . J 2 GOL A 1 404 104 GOL GOL . K 3 HOH A 1 501 1 HOH HOH . K 3 HOH A 2 502 2 HOH HOH . K 3 HOH A 3 503 3 HOH HOH . K 3 HOH A 4 504 4 HOH HOH . K 3 HOH A 5 505 5 HOH HOH . K 3 HOH A 6 506 7 HOH HOH . K 3 HOH A 7 507 12 HOH HOH . K 3 HOH A 8 508 14 HOH HOH . K 3 HOH A 9 509 15 HOH HOH . K 3 HOH A 10 510 16 HOH HOH . K 3 HOH A 11 511 17 HOH HOH . K 3 HOH A 12 512 19 HOH HOH . K 3 HOH A 13 513 21 HOH HOH . K 3 HOH A 14 514 23 HOH HOH . K 3 HOH A 15 515 25 HOH HOH . K 3 HOH A 16 516 26 HOH HOH . K 3 HOH A 17 517 28 HOH HOH . K 3 HOH A 18 518 29 HOH HOH . K 3 HOH A 19 519 31 HOH HOH . K 3 HOH A 20 520 32 HOH HOH . K 3 HOH A 21 521 34 HOH HOH . K 3 HOH A 22 522 37 HOH HOH . K 3 HOH A 23 523 38 HOH HOH . K 3 HOH A 24 524 41 HOH HOH . K 3 HOH A 25 525 42 HOH HOH . K 3 HOH A 26 526 44 HOH HOH . K 3 HOH A 27 527 45 HOH HOH . K 3 HOH A 28 528 49 HOH HOH . K 3 HOH A 29 529 50 HOH HOH . K 3 HOH A 30 530 52 HOH HOH . K 3 HOH A 31 531 56 HOH HOH . K 3 HOH A 32 532 58 HOH HOH . K 3 HOH A 33 533 59 HOH HOH . K 3 HOH A 34 534 60 HOH HOH . K 3 HOH A 35 535 62 HOH HOH . K 3 HOH A 36 536 63 HOH HOH . K 3 HOH A 37 537 64 HOH HOH . K 3 HOH A 38 538 68 HOH HOH . K 3 HOH A 39 539 70 HOH HOH . K 3 HOH A 40 540 74 HOH HOH . K 3 HOH A 41 541 75 HOH HOH . K 3 HOH A 42 542 76 HOH HOH . K 3 HOH A 43 543 77 HOH HOH . K 3 HOH A 44 544 79 HOH HOH . K 3 HOH A 45 545 82 HOH HOH . K 3 HOH A 46 546 86 HOH HOH . K 3 HOH A 47 547 87 HOH HOH . K 3 HOH A 48 548 88 HOH HOH . K 3 HOH A 49 549 91 HOH HOH . K 3 HOH A 50 550 92 HOH HOH . K 3 HOH A 51 551 93 HOH HOH . K 3 HOH A 52 552 94 HOH HOH . K 3 HOH A 53 553 96 HOH HOH . K 3 HOH A 54 554 97 HOH HOH . K 3 HOH A 55 555 99 HOH HOH . K 3 HOH A 56 556 100 HOH HOH . K 3 HOH A 57 557 105 HOH HOH . K 3 HOH A 58 558 113 HOH HOH . K 3 HOH A 59 559 117 HOH HOH . K 3 HOH A 60 560 120 HOH HOH . L 3 HOH B 1 401 80 HOH HOH . L 3 HOH B 2 402 81 HOH HOH . L 3 HOH B 3 403 102 HOH HOH . M 3 HOH C 1 401 9 HOH HOH . M 3 HOH C 2 402 35 HOH HOH . M 3 HOH C 3 403 36 HOH HOH . M 3 HOH C 4 404 39 HOH HOH . M 3 HOH C 5 405 40 HOH HOH . M 3 HOH C 6 406 48 HOH HOH . M 3 HOH C 7 407 51 HOH HOH . M 3 HOH C 8 408 55 HOH HOH . M 3 HOH C 9 409 65 HOH HOH . M 3 HOH C 10 410 78 HOH HOH . M 3 HOH C 11 411 83 HOH HOH . M 3 HOH C 12 412 85 HOH HOH . M 3 HOH C 13 413 90 HOH HOH . M 3 HOH C 14 414 106 HOH HOH . M 3 HOH C 15 415 111 HOH HOH . M 3 HOH C 16 416 115 HOH HOH . N 3 HOH D 1 401 107 HOH HOH . N 3 HOH D 2 402 110 HOH HOH . O 3 HOH E 1 401 103 HOH HOH . P 3 HOH F 1 401 6 HOH HOH . P 3 HOH F 2 402 8 HOH HOH . P 3 HOH F 3 403 10 HOH HOH . P 3 HOH F 4 404 11 HOH HOH . P 3 HOH F 5 405 13 HOH HOH . P 3 HOH F 6 406 18 HOH HOH . P 3 HOH F 7 407 20 HOH HOH . P 3 HOH F 8 408 22 HOH HOH . P 3 HOH F 9 409 24 HOH HOH . P 3 HOH F 10 410 27 HOH HOH . P 3 HOH F 11 411 30 HOH HOH . P 3 HOH F 12 412 33 HOH HOH . P 3 HOH F 13 413 43 HOH HOH . P 3 HOH F 14 414 46 HOH HOH . P 3 HOH F 15 415 47 HOH HOH . P 3 HOH F 16 416 53 HOH HOH . P 3 HOH F 17 417 54 HOH HOH . P 3 HOH F 18 418 57 HOH HOH . P 3 HOH F 19 419 61 HOH HOH . P 3 HOH F 20 420 66 HOH HOH . P 3 HOH F 21 421 67 HOH HOH . P 3 HOH F 22 422 69 HOH HOH . P 3 HOH F 23 423 71 HOH HOH . P 3 HOH F 24 424 72 HOH HOH . P 3 HOH F 25 425 73 HOH HOH . P 3 HOH F 26 426 84 HOH HOH . P 3 HOH F 27 427 89 HOH HOH . P 3 HOH F 28 428 95 HOH HOH . P 3 HOH F 29 429 98 HOH HOH . P 3 HOH F 30 430 101 HOH HOH . P 3 HOH F 31 431 104 HOH HOH . P 3 HOH F 32 432 108 HOH HOH . P 3 HOH F 33 433 109 HOH HOH . P 3 HOH F 34 434 112 HOH HOH . P 3 HOH F 35 435 114 HOH HOH . P 3 HOH F 36 436 116 HOH HOH . P 3 HOH F 37 437 118 HOH HOH . P 3 HOH F 38 438 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 2 60.866 31.212 42.952 1 27.32 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . H 2 61.575 30.039 42.578 1 38.86 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . H 2 61.599 31.89 44.102 1 25.84 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . H 2 62.934 31.411 44.126 1 31.21 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . H 2 61.541 33.403 43.903 1 25.98 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . H 2 60.183 33.787 43.726 1 40.88 ? O3 GOL 402 A 1 HETATM 7 H H11 GOL . . . H 2 59.854 30.951 43.26 1 32.78 ? H11 GOL 402 A 1 HETATM 8 H H12 GOL . . . H 2 60.8 31.892 42.102 1 32.78 ? H12 GOL 402 A 1 HETATM 9 H HO1 GOL . . . H 2 61.075 29.562 41.883 1 46.63 ? HO1 GOL 402 A 1 HETATM 10 H H2 GOL . . . H 2 61.096 31.638 45.036 1 31.01 ? H2 GOL 402 A 1 HETATM 11 H HO2 GOL . . . H 2 63.378 31.637 43.282 1 37.45 ? HO2 GOL 402 A 1 HETATM 12 H H31 GOL . . . H 2 62.125 33.685 43.027 1 31.17 ? H31 GOL 402 A 1 HETATM 13 H H32 GOL . . . H 2 61.96 33.908 44.773 1 31.17 ? H32 GOL 402 A 1 HETATM 14 H HO3 GOL . . . H 2 60.129 34.761 43.63 1 49.05 ? HO3 GOL 402 A 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #