data_4LGH
#
_model_server_result.job_id            n-lw0x5D7yCfhAUEnOpCbQ 
_model_server_result.datetime_utc      '2024-11-28 08:06:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lgh 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
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_entry.id    4LGH 
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_exptl.entry_id    4LGH 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              331.414 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-tert-butyl-3-(naphthalen-1-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         100.38 
_cell.angle_beta          91.01 
_cell.angle_gamma         90.07 
_cell.entry_id            4LGH 
_cell.length_a            42.264 
_cell.length_b            62.654 
_cell.length_c            74.325 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4LGH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H21 N5' 
_chem_comp.formula_weight    331.414 
_chem_comp.id                0JN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-tert-butyl-3-(naphthalen-1-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAE CAI 0JN doub 1 n y 
CAE CAF 0JN sing 2 n y 
CAI CAT 0JN sing 3 n y 
CAF CAK 0JN doub 4 n y 
CAT CAJ 0JN doub 5 n y 
CAT CAU 0JN sing 6 n y 
CAK CAU 0JN sing 7 n y 
CAJ CAG 0JN sing 8 n y 
CAU CAR 0JN doub 9 n y 
CAA CAY 0JN sing 10 n n 
CAB CAY 0JN sing 11 n n 
CAG CAH 0JN doub 12 n y 
CAY NAX 0JN sing 13 n n 
CAY CAC 0JN sing 14 n n 
CAR CAH 0JN sing 15 n y 
CAR CAM 0JN sing 16 n n 
NAP NAX 0JN sing 17 n y 
NAP CAS 0JN doub 18 n y 
NAX C4 0JN sing 19 n y 
CAS CAM 0JN sing 20 n n 
CAS C5 0JN sing 21 n y 
C4 N3 0JN doub 22 n y 
C4 C5 0JN sing 23 n y 
N3 C2 0JN sing 24 n y 
C5 C6 0JN doub 25 n y 
C2 N1 0JN doub 26 n y 
C6 N1 0JN sing 27 n y 
C6 NAD 0JN sing 28 n n 
C2 H1 0JN sing 29 n n 
CAA H2 0JN sing 30 n n 
CAA H3 0JN sing 31 n n 
CAA H4 0JN sing 32 n n 
CAB H5 0JN sing 33 n n 
CAB H6 0JN sing 34 n n 
CAB H7 0JN sing 35 n n 
CAE H8 0JN sing 36 n n 
CAF H9 0JN sing 37 n n 
CAG H10 0JN sing 38 n n 
CAH H11 0JN sing 39 n n 
CAI H12 0JN sing 40 n n 
CAJ H13 0JN sing 41 n n 
CAC H14 0JN sing 42 n n 
CAC H15 0JN sing 43 n n 
CAC H16 0JN sing 44 n n 
NAD H17 0JN sing 45 n n 
NAD H18 0JN sing 46 n n 
CAM H19 0JN sing 47 n n 
CAM H20 0JN sing 48 n n 
CAK H21 0JN sing 49 n n 
#
_atom_sites.entry_id                     4LGH 
_atom_sites.fract_transf_matrix[1][1]    0.023661 
_atom_sites.fract_transf_matrix[1][2]    0.000029 
_atom_sites.fract_transf_matrix[1][3]    0.000429 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015961 
_atom_sites.fract_transf_matrix[2][3]    0.002924 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0JN A 1 601 1 0JN 0JN . 
D 2 0JN B 1 601 1 0JN 0JN . 
E 3 HOH A 1 701 2 HOH HOH . 
E 3 HOH A 2 702 4 HOH HOH . 
E 3 HOH A 3 703 5 HOH HOH . 
E 3 HOH A 4 704 6 HOH HOH . 
E 3 HOH A 5 705 7 HOH HOH . 
E 3 HOH A 6 706 8 HOH HOH . 
E 3 HOH A 7 707 9 HOH HOH . 
E 3 HOH A 8 708 10 HOH HOH . 
E 3 HOH A 9 709 11 HOH HOH . 
E 3 HOH A 10 710 12 HOH HOH . 
E 3 HOH A 11 711 13 HOH HOH . 
E 3 HOH A 12 712 14 HOH HOH . 
E 3 HOH A 13 713 15 HOH HOH . 
E 3 HOH A 14 714 16 HOH HOH . 
E 3 HOH A 15 715 17 HOH HOH . 
E 3 HOH A 16 716 18 HOH HOH . 
E 3 HOH A 17 717 19 HOH HOH . 
E 3 HOH A 18 718 20 HOH HOH . 
E 3 HOH A 19 719 21 HOH HOH . 
E 3 HOH A 20 720 22 HOH HOH . 
E 3 HOH A 21 721 23 HOH HOH . 
E 3 HOH A 22 722 39 HOH HOH . 
F 3 HOH B 1 701 1 HOH HOH . 
F 3 HOH B 2 702 24 HOH HOH . 
F 3 HOH B 3 703 25 HOH HOH . 
F 3 HOH B 4 704 26 HOH HOH . 
F 3 HOH B 5 705 27 HOH HOH . 
F 3 HOH B 6 706 28 HOH HOH . 
F 3 HOH B 7 707 29 HOH HOH . 
F 3 HOH B 8 708 30 HOH HOH . 
F 3 HOH B 9 709 31 HOH HOH . 
F 3 HOH B 10 710 32 HOH HOH . 
F 3 HOH B 11 711 34 HOH HOH . 
F 3 HOH B 12 712 35 HOH HOH . 
F 3 HOH B 13 713 36 HOH HOH . 
F 3 HOH B 14 714 37 HOH HOH . 
F 3 HOH B 15 715 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 0JN . . . D 2 -0.002 -26.51 32.188 1 32.26 ? N1 0JN 601 B 1 
HETATM 2 C C2 0JN . . . D 2 0.288 -25.322 31.538 1 29.07 ? C2 0JN 601 B 1 
HETATM 3 N N3 0JN . . . D 2 -0.694 -24.471 31.184 1 31.46 ? N3 0JN 601 B 1 
HETATM 4 C C4 0JN . . . D 2 -2.022 -24.739 31.453 1 26.4 ? C4 0JN 601 B 1 
HETATM 5 C C5 0JN . . . D 2 -2.348 -25.952 32.12 1 23.78 ? C5 0JN 601 B 1 
HETATM 6 C C6 0JN . . . D 2 -1.286 -26.841 32.485 1 31.16 ? C6 0JN 601 B 1 
HETATM 7 C CAA 0JN . . . D 2 -2.972 -22.861 29.089 1 26.08 ? CAA 0JN 601 B 1 
HETATM 8 C CAB 0JN . . . D 2 -4.75 -22.281 30.63 1 23.52 ? CAB 0JN 601 B 1 
HETATM 9 C CAE 0JN . . . D 2 -5.364 -30.529 36.661 1 63.28 ? CAE 0JN 601 B 1 
HETATM 10 C CAF 0JN . . . D 2 -5.601 -30.532 35.276 1 61.34 ? CAF 0JN 601 B 1 
HETATM 11 C CAG 0JN . . . D 2 -3.735 -25.887 36.457 1 55.11 ? CAG 0JN 601 B 1 
HETATM 12 C CAH 0JN . . . D 2 -3.954 -25.862 35.105 1 55.69 ? CAH 0JN 601 B 1 
HETATM 13 C CAI 0JN . . . D 2 -4.846 -29.378 37.294 1 56.58 ? CAI 0JN 601 B 1 
HETATM 14 C CAJ 0JN . . . D 2 -4.034 -27.07 37.203 1 60.64 ? CAJ 0JN 601 B 1 
HETATM 15 C CAR 0JN . . . D 2 -4.491 -27.037 34.428 1 54.07 ? CAR 0JN 601 B 1 
HETATM 16 C CAS 0JN . . . D 2 -3.82 -25.917 32.242 1 36.97 ? CAS 0JN 601 B 1 
HETATM 17 C CAT 0JN . . . D 2 -4.571 -28.249 36.534 1 52.78 ? CAT 0JN 601 B 1 
HETATM 18 N NAX 0JN . . . D 2 -3.2 -24.068 31.216 1 37.54 ? NAX 0JN 601 B 1 
HETATM 19 C CAY 0JN . . . D 2 -3.34 -22.729 30.52 1 38.94 ? CAY 0JN 601 B 1 
HETATM 20 C CAC 0JN . . . D 2 -2.423 -21.69 31.186 1 34.95 ? CAC 0JN 601 B 1 
HETATM 21 N NAP 0JN . . . D 2 -4.27 -24.777 31.691 1 34.88 ? NAP 0JN 601 B 1 
HETATM 22 N NAD 0JN . . . D 2 -1.539 -28.081 33.16 1 39.29 ? NAD 0JN 601 B 1 
HETATM 23 C CAM 0JN . . . D 2 -4.724 -26.974 32.878 1 44.08 ? CAM 0JN 601 B 1 
HETATM 24 C CAU 0JN . . . D 2 -4.795 -28.239 35.182 1 60.57 ? CAU 0JN 601 B 1 
HETATM 25 C CAK 0JN . . . D 2 -5.335 -29.443 34.535 1 58.75 ? CAK 0JN 601 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           25 
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