data_4LHN # _model_server_result.job_id SHCk4iM8Dag6BecpFb7bFw _model_server_result.datetime_utc '2024-10-17 11:20:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4LHN # _exptl.entry_id 4LHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LHN _cell.length_a 46.7 _cell.length_b 63.59 _cell.length_c 106.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 29 1_555 A SG CYS 153 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 65 A CYS 87 1_555 A SG CYS 91 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf3 A SG CYS 74 A CYS 96 1_555 A SG CYS 85 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? disulf ? disulf4 A SG CYS 154 A CYS 176 1_555 A SG CYS 241 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc1 A OD1 ASP 138 A ASP 160 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A OD2 ASP 139 A ASP 161 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc3 A OD1 ASN 202 A ASN 224 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A O VAL 204 A VAL 226 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc5 A O TRP 206 A TRP 228 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 B O4 MAN . A MAN 301 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc7 B O3 MAN . A MAN 301 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 218 n n C1 O1 MAN sing 219 n n C1 O5 MAN sing 220 n n C1 H1 MAN sing 221 n n C2 C3 MAN sing 222 n n C2 O2 MAN sing 223 n n C2 H2 MAN sing 224 n n C3 C4 MAN sing 225 n n C3 O3 MAN sing 226 n n C3 H3 MAN sing 227 n n C4 C5 MAN sing 228 n n C4 O4 MAN sing 229 n n C4 H4 MAN sing 230 n n C5 C6 MAN sing 231 n n C5 O5 MAN sing 232 n n C5 H5 MAN sing 233 n n C6 O6 MAN sing 234 n n C6 H61 MAN sing 235 n n C6 H62 MAN sing 236 n n O1 HO1 MAN sing 237 n n O2 HO2 MAN sing 238 n n O3 HO3 MAN sing 239 n n O4 HO4 MAN sing 240 n n O6 HO6 MAN sing 241 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4LHN _atom_sites.fract_transf_matrix[1][1] 0.021413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MAN A 1 301 1 MAN MAN . C 3 CA A 1 302 2 CA CA . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 6 HOH HOH . D 4 HOH A 6 406 9 HOH HOH . D 4 HOH A 7 407 12 HOH HOH . D 4 HOH A 8 408 13 HOH HOH . D 4 HOH A 9 409 14 HOH HOH . D 4 HOH A 10 410 17 HOH HOH . D 4 HOH A 11 411 18 HOH HOH . D 4 HOH A 12 412 20 HOH HOH . D 4 HOH A 13 413 21 HOH HOH . D 4 HOH A 14 414 22 HOH HOH . D 4 HOH A 15 415 23 HOH HOH . D 4 HOH A 16 416 25 HOH HOH . D 4 HOH A 17 417 26 HOH HOH . D 4 HOH A 18 418 28 HOH HOH . D 4 HOH A 19 419 29 HOH HOH . D 4 HOH A 20 420 30 HOH HOH . D 4 HOH A 21 421 32 HOH HOH . D 4 HOH A 22 422 33 HOH HOH . D 4 HOH A 23 423 34 HOH HOH . D 4 HOH A 24 424 35 HOH HOH . D 4 HOH A 25 425 36 HOH HOH . D 4 HOH A 26 426 38 HOH HOH . D 4 HOH A 27 427 41 HOH HOH . D 4 HOH A 28 428 42 HOH HOH . D 4 HOH A 29 429 43 HOH HOH . D 4 HOH A 30 430 44 HOH HOH . D 4 HOH A 31 431 45 HOH HOH . D 4 HOH A 32 432 49 HOH HOH . D 4 HOH A 33 433 50 HOH HOH . D 4 HOH A 34 434 52 HOH HOH . D 4 HOH A 35 435 55 HOH HOH . D 4 HOH A 36 436 56 HOH HOH . D 4 HOH A 37 437 57 HOH HOH . D 4 HOH A 38 438 58 HOH HOH . D 4 HOH A 39 439 59 HOH HOH . D 4 HOH A 40 440 60 HOH HOH . D 4 HOH A 41 441 61 HOH HOH . D 4 HOH A 42 442 63 HOH HOH . D 4 HOH A 43 443 64 HOH HOH . D 4 HOH A 44 444 68 HOH HOH . D 4 HOH A 45 445 70 HOH HOH . D 4 HOH A 46 446 73 HOH HOH . D 4 HOH A 47 447 78 HOH HOH . D 4 HOH A 48 448 84 HOH HOH . D 4 HOH A 49 449 86 HOH HOH . D 4 HOH A 50 450 87 HOH HOH . D 4 HOH A 51 451 96 HOH HOH . D 4 HOH A 52 452 98 HOH HOH . D 4 HOH A 53 453 102 HOH HOH . D 4 HOH A 54 454 105 HOH HOH . D 4 HOH A 55 455 106 HOH HOH . D 4 HOH A 56 456 107 HOH HOH . D 4 HOH A 57 457 111 HOH HOH . D 4 HOH A 58 458 113 HOH HOH . D 4 HOH A 59 459 116 HOH HOH . D 4 HOH A 60 460 117 HOH HOH . D 4 HOH A 61 461 118 HOH HOH . D 4 HOH A 62 462 122 HOH HOH . D 4 HOH A 63 463 127 HOH HOH . D 4 HOH A 64 464 129 HOH HOH . D 4 HOH A 65 465 130 HOH HOH . D 4 HOH A 66 466 133 HOH HOH . D 4 HOH A 67 467 134 HOH HOH . D 4 HOH A 68 468 136 HOH HOH . D 4 HOH A 69 469 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . B 2 1.173 36.613 4.024 1 21.05 ? C1 MAN 301 A 1 HETATM 2 C C2 MAN . . . B 2 1.481 37.307 5.346 1 19.42 ? C2 MAN 301 A 1 HETATM 3 C C3 MAN . . . B 2 2.963 37.201 5.686 1 18.92 ? C3 MAN 301 A 1 HETATM 4 C C4 MAN . . . B 2 3.451 35.763 5.555 1 19.16 ? C4 MAN 301 A 1 HETATM 5 C C5 MAN . . . B 2 3.026 35.162 4.221 1 20.35 ? C5 MAN 301 A 1 HETATM 6 C C6 MAN . . . B 2 3.449 33.701 4.12 1 19.73 ? C6 MAN 301 A 1 HETATM 7 O O1 MAN . . . B 2 1.856 37.286 2.961 1 27.66 ? O1 MAN 301 A 1 HETATM 8 O O2 MAN . . . B 2 0.707 36.709 6.391 1 17.72 ? O2 MAN 301 A 1 HETATM 9 O O3 MAN . . . B 2 3.179 37.658 7.026 1 18.97 ? O3 MAN 301 A 1 HETATM 10 O O4 MAN . . . B 2 4.879 35.732 5.659 1 17.44 ? O4 MAN 301 A 1 HETATM 11 O O5 MAN . . . B 2 1.609 35.257 4.087 1 20.66 ? O5 MAN 301 A 1 HETATM 12 O O6 MAN . . . B 2 2.626 32.905 4.981 1 20.05 ? O6 MAN 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #