data_4LHU
#
_model_server_result.job_id            5jn2AoCo7sEZ4Fk8iJ_p8Q 
_model_server_result.datetime_utc      '2024-10-30 09:20:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lhu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":306}' 
#
_entry.id    4LHU 
#
_exptl.entry_id    4LHU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          8 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-mannopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LHU 
_cell.length_a            131.62 
_cell.length_b            152.69 
_cell.length_c            135.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LHU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
5 oligosaccharide 
6 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
5 n E NAG 1 C 1 NAG A 303 NAG 
5 n E NAG 2 C 2 NAG A 304 NAG 
5 n F NAG 1 E 1 NAG A 305 NAG 
5 n F NAG 2 E 2 NAG A 306 NAG 
6 n G NAG 1 F 1 NAG D 401 NAG 
6 n G NAG 2 F 2 NAG D 402 NAG 
6 n G BMA 3 F 3 BMA D 403 BMA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 26 D CYS 26 1_555 C SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
disulf ? disulf2 D SG CYS 26 G CYS 26 1_555 D SG CYS 98 G CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? 
covale ? covale1 A ND2 ASN 15 A ASN 20 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 A ND2 ASN 37 A ASN 42 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 A ND2 ASN 158 A ASN 163 1_555 H C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 C ND2 ASN 134 D ASN 134 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale5 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale6 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale7 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale8 G O4 NAG . F NAG 2 1_555 G C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BMA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-mannopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BMA sing 70 n n 
C1 O1 BMA sing 71 n n 
C1 O5 BMA sing 72 n n 
C1 H1 BMA sing 73 n n 
C2 C3 BMA sing 74 n n 
C2 O2 BMA sing 75 n n 
C2 H2 BMA sing 76 n n 
C3 C4 BMA sing 77 n n 
C3 O3 BMA sing 78 n n 
C3 H3 BMA sing 79 n n 
C4 C5 BMA sing 80 n n 
C4 O4 BMA sing 81 n n 
C4 H4 BMA sing 82 n n 
C5 C6 BMA sing 83 n n 
C5 O5 BMA sing 84 n n 
C5 H5 BMA sing 85 n n 
C6 O6 BMA sing 86 n n 
C6 H61 BMA sing 87 n n 
C6 H62 BMA sing 88 n n 
O1 HO1 BMA sing 89 n n 
O2 HO2 BMA sing 90 n n 
O3 HO3 BMA sing 91 n n 
O4 HO4 BMA sing 92 n n 
O6 HO6 BMA sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BMA b-D-mannopyranose 'COMMON NAME' GMML 1 
BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4LHU 
_atom_sites.fract_transf_matrix[1][1]    0.007598 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 7 NAG A 1 301 300 NAG NAG . 
I 8 BMA A 1 306 307 BMA BMA . 
J 9 MG A 1 307 1 MG MG . 
K 10 JLS A 1 308 1 JLS JLS . 
L 11 CL G 1 301 1 CL CL . 
M 12 HOH A 1 401 3 HOH HOH . 
M 12 HOH A 2 402 11 HOH HOH . 
M 12 HOH A 3 403 13 HOH HOH . 
M 12 HOH A 4 404 16 HOH HOH . 
M 12 HOH A 5 405 20 HOH HOH . 
M 12 HOH A 6 406 21 HOH HOH . 
M 12 HOH A 7 407 23 HOH HOH . 
M 12 HOH A 8 408 32 HOH HOH . 
M 12 HOH A 9 409 34 HOH HOH . 
M 12 HOH A 10 410 38 HOH HOH . 
M 12 HOH A 11 411 40 HOH HOH . 
M 12 HOH A 12 412 42 HOH HOH . 
M 12 HOH A 13 413 48 HOH HOH . 
M 12 HOH A 14 414 50 HOH HOH . 
M 12 HOH A 15 415 53 HOH HOH . 
M 12 HOH A 16 416 55 HOH HOH . 
M 12 HOH A 17 417 56 HOH HOH . 
M 12 HOH A 18 418 58 HOH HOH . 
M 12 HOH A 19 419 69 HOH HOH . 
M 12 HOH A 20 420 70 HOH HOH . 
M 12 HOH A 21 421 76 HOH HOH . 
M 12 HOH A 22 422 77 HOH HOH . 
M 12 HOH A 23 423 80 HOH HOH . 
M 12 HOH A 24 424 82 HOH HOH . 
M 12 HOH A 25 425 84 HOH HOH . 
M 12 HOH A 26 426 85 HOH HOH . 
M 12 HOH A 27 427 87 HOH HOH . 
M 12 HOH A 28 428 90 HOH HOH . 
M 12 HOH A 29 429 96 HOH HOH . 
M 12 HOH A 30 430 101 HOH HOH . 
M 12 HOH A 31 431 102 HOH HOH . 
M 12 HOH A 32 432 103 HOH HOH . 
M 12 HOH A 33 433 107 HOH HOH . 
M 12 HOH A 34 434 108 HOH HOH . 
M 12 HOH A 35 435 111 HOH HOH . 
M 12 HOH A 36 436 112 HOH HOH . 
M 12 HOH A 37 437 113 HOH HOH . 
M 12 HOH A 38 438 115 HOH HOH . 
M 12 HOH A 39 439 116 HOH HOH . 
M 12 HOH A 40 440 118 HOH HOH . 
M 12 HOH A 41 441 121 HOH HOH . 
M 12 HOH A 42 442 122 HOH HOH . 
M 12 HOH A 43 443 124 HOH HOH . 
M 12 HOH A 44 444 125 HOH HOH . 
N 12 HOH B 1 101 28 HOH HOH . 
N 12 HOH B 2 102 45 HOH HOH . 
N 12 HOH B 3 103 64 HOH HOH . 
N 12 HOH B 4 104 67 HOH HOH . 
N 12 HOH B 5 105 73 HOH HOH . 
N 12 HOH B 6 106 93 HOH HOH . 
O 12 HOH D 1 501 7 HOH HOH . 
O 12 HOH D 2 502 8 HOH HOH . 
O 12 HOH D 3 503 19 HOH HOH . 
O 12 HOH D 4 504 26 HOH HOH . 
O 12 HOH D 5 505 35 HOH HOH . 
O 12 HOH D 6 506 36 HOH HOH . 
O 12 HOH D 7 507 44 HOH HOH . 
O 12 HOH D 8 508 46 HOH HOH . 
O 12 HOH D 9 509 52 HOH HOH . 
O 12 HOH D 10 510 57 HOH HOH . 
O 12 HOH D 11 511 59 HOH HOH . 
O 12 HOH D 12 512 61 HOH HOH . 
O 12 HOH D 13 513 75 HOH HOH . 
O 12 HOH D 14 514 83 HOH HOH . 
O 12 HOH D 15 515 104 HOH HOH . 
O 12 HOH D 16 516 114 HOH HOH . 
O 12 HOH D 17 517 117 HOH HOH . 
O 12 HOH D 18 518 119 HOH HOH . 
P 12 HOH G 1 401 1 HOH HOH . 
P 12 HOH G 2 402 2 HOH HOH . 
P 12 HOH G 3 403 4 HOH HOH . 
P 12 HOH G 4 404 5 HOH HOH . 
P 12 HOH G 5 405 10 HOH HOH . 
P 12 HOH G 6 406 14 HOH HOH . 
P 12 HOH G 7 407 15 HOH HOH . 
P 12 HOH G 8 408 17 HOH HOH . 
P 12 HOH G 9 409 18 HOH HOH . 
P 12 HOH G 10 410 22 HOH HOH . 
P 12 HOH G 11 411 25 HOH HOH . 
P 12 HOH G 12 412 27 HOH HOH . 
P 12 HOH G 13 413 29 HOH HOH . 
P 12 HOH G 14 414 30 HOH HOH . 
P 12 HOH G 15 415 37 HOH HOH . 
P 12 HOH G 16 416 39 HOH HOH . 
P 12 HOH G 17 417 41 HOH HOH . 
P 12 HOH G 18 418 49 HOH HOH . 
P 12 HOH G 19 419 51 HOH HOH . 
P 12 HOH G 20 420 54 HOH HOH . 
P 12 HOH G 21 421 60 HOH HOH . 
P 12 HOH G 22 422 62 HOH HOH . 
P 12 HOH G 23 423 63 HOH HOH . 
P 12 HOH G 24 424 65 HOH HOH . 
P 12 HOH G 25 425 66 HOH HOH . 
P 12 HOH G 26 426 68 HOH HOH . 
P 12 HOH G 27 427 71 HOH HOH . 
P 12 HOH G 28 428 72 HOH HOH . 
P 12 HOH G 29 429 78 HOH HOH . 
P 12 HOH G 30 430 79 HOH HOH . 
P 12 HOH G 31 431 81 HOH HOH . 
P 12 HOH G 32 432 86 HOH HOH . 
P 12 HOH G 33 433 89 HOH HOH . 
P 12 HOH G 34 434 91 HOH HOH . 
P 12 HOH G 35 435 94 HOH HOH . 
P 12 HOH G 36 436 98 HOH HOH . 
P 12 HOH G 37 437 100 HOH HOH . 
P 12 HOH G 38 438 106 HOH HOH . 
P 12 HOH G 39 439 110 HOH HOH . 
P 12 HOH G 40 440 120 HOH HOH . 
P 12 HOH G 41 441 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMA . . . I 8 -10.456 -8.978 7.092 1 176.76 ? C1 BMA 306 A 1 
HETATM 2 C C2 BMA . . . I 8 -10.49 -8.401 8.479 1 176.91 ? C2 BMA 306 A 1 
HETATM 3 C C3 BMA . . . I 8 -11.783 -8.621 9.171 1 178.63 ? C3 BMA 306 A 1 
HETATM 4 C C4 BMA . . . I 8 -12.969 -8.504 8.436 1 180.26 ? C4 BMA 306 A 1 
HETATM 5 C C5 BMA . . . I 8 -12.885 -8.926 6.986 1 180.21 ? C5 BMA 306 A 1 
HETATM 6 C C6 BMA . . . I 8 -14.012 -8.344 6.15 1 182.09 ? C6 BMA 306 A 1 
HETATM 7 O O2 BMA . . . I 8 -10.104 -7.033 8.428 1 177.51 ? O2 BMA 306 A 1 
HETATM 8 O O3 BMA . . . I 8 -11.825 -7.757 10.281 1 179.63 ? O3 BMA 306 A 1 
HETATM 9 O O4 BMA . . . I 8 -13.875 -9.378 9.097 1 180.34 ? O4 BMA 306 A 1 
HETATM 10 O O5 BMA . . . I 8 -11.589 -8.661 6.339 1 178.99 ? O5 BMA 306 A 1 
HETATM 11 O O6 BMA . . . I 8 -13.834 -8.223 4.784 1 181.59 ? O6 BMA 306 A 1 
#
_model_server_stats.io_time_ms              90 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#