data_4LHU # _model_server_result.job_id '_l04gO9j_efodkNi1oh0Dw' _model_server_result.datetime_utc '2024-12-05 04:47:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lhu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":306}' # _entry.id 4LHU # _exptl.entry_id 4LHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LHU _cell.length_a 131.62 _cell.length_b 152.69 _cell.length_c 135.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 C 1 NAG A 303 NAG 5 n E NAG 2 C 2 NAG A 304 NAG 5 n F NAG 1 E 1 NAG A 305 NAG 5 n F NAG 2 E 2 NAG A 306 NAG 6 n G NAG 1 F 1 NAG D 401 NAG 6 n G NAG 2 F 2 NAG D 402 NAG 6 n G BMA 3 F 3 BMA D 403 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 26 D CYS 26 1_555 C SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? disulf ? disulf2 D SG CYS 26 G CYS 26 1_555 D SG CYS 98 G CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? covale ? covale1 A ND2 ASN 15 A ASN 20 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 37 A ASN 42 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 158 A ASN 163 1_555 H C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 C ND2 ASN 134 D ASN 134 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale6 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale7 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale8 G O4 NAG . F NAG 2 1_555 G C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BMA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-mannopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMA sing 70 n n C1 O1 BMA sing 71 n n C1 O5 BMA sing 72 n n C1 H1 BMA sing 73 n n C2 C3 BMA sing 74 n n C2 O2 BMA sing 75 n n C2 H2 BMA sing 76 n n C3 C4 BMA sing 77 n n C3 O3 BMA sing 78 n n C3 H3 BMA sing 79 n n C4 C5 BMA sing 80 n n C4 O4 BMA sing 81 n n C4 H4 BMA sing 82 n n C5 C6 BMA sing 83 n n C5 O5 BMA sing 84 n n C5 H5 BMA sing 85 n n C6 O6 BMA sing 86 n n C6 H61 BMA sing 87 n n C6 H62 BMA sing 88 n n O1 HO1 BMA sing 89 n n O2 HO2 BMA sing 90 n n O3 HO3 BMA sing 91 n n O4 HO4 BMA sing 92 n n O6 HO6 BMA sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BMA b-D-mannopyranose 'COMMON NAME' GMML 1 BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4LHU _atom_sites.fract_transf_matrix[1][1] 0.007598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 NAG A 1 301 300 NAG NAG . I 8 BMA A 1 306 307 BMA BMA . J 9 MG A 1 307 1 MG MG . K 10 JLS A 1 308 1 JLS JLS . L 11 CL G 1 301 1 CL CL . M 12 HOH A 1 401 3 HOH HOH . M 12 HOH A 2 402 11 HOH HOH . M 12 HOH A 3 403 13 HOH HOH . M 12 HOH A 4 404 16 HOH HOH . M 12 HOH A 5 405 20 HOH HOH . M 12 HOH A 6 406 21 HOH HOH . M 12 HOH A 7 407 23 HOH HOH . M 12 HOH A 8 408 32 HOH HOH . M 12 HOH A 9 409 34 HOH HOH . M 12 HOH A 10 410 38 HOH HOH . M 12 HOH A 11 411 40 HOH HOH . M 12 HOH A 12 412 42 HOH HOH . M 12 HOH A 13 413 48 HOH HOH . M 12 HOH A 14 414 50 HOH HOH . M 12 HOH A 15 415 53 HOH HOH . M 12 HOH A 16 416 55 HOH HOH . M 12 HOH A 17 417 56 HOH HOH . M 12 HOH A 18 418 58 HOH HOH . M 12 HOH A 19 419 69 HOH HOH . M 12 HOH A 20 420 70 HOH HOH . M 12 HOH A 21 421 76 HOH HOH . M 12 HOH A 22 422 77 HOH HOH . M 12 HOH A 23 423 80 HOH HOH . M 12 HOH A 24 424 82 HOH HOH . M 12 HOH A 25 425 84 HOH HOH . M 12 HOH A 26 426 85 HOH HOH . M 12 HOH A 27 427 87 HOH HOH . M 12 HOH A 28 428 90 HOH HOH . M 12 HOH A 29 429 96 HOH HOH . M 12 HOH A 30 430 101 HOH HOH . M 12 HOH A 31 431 102 HOH HOH . M 12 HOH A 32 432 103 HOH HOH . M 12 HOH A 33 433 107 HOH HOH . M 12 HOH A 34 434 108 HOH HOH . M 12 HOH A 35 435 111 HOH HOH . M 12 HOH A 36 436 112 HOH HOH . M 12 HOH A 37 437 113 HOH HOH . M 12 HOH A 38 438 115 HOH HOH . M 12 HOH A 39 439 116 HOH HOH . M 12 HOH A 40 440 118 HOH HOH . M 12 HOH A 41 441 121 HOH HOH . M 12 HOH A 42 442 122 HOH HOH . M 12 HOH A 43 443 124 HOH HOH . M 12 HOH A 44 444 125 HOH HOH . N 12 HOH B 1 101 28 HOH HOH . N 12 HOH B 2 102 45 HOH HOH . N 12 HOH B 3 103 64 HOH HOH . N 12 HOH B 4 104 67 HOH HOH . N 12 HOH B 5 105 73 HOH HOH . N 12 HOH B 6 106 93 HOH HOH . O 12 HOH D 1 501 7 HOH HOH . O 12 HOH D 2 502 8 HOH HOH . O 12 HOH D 3 503 19 HOH HOH . O 12 HOH D 4 504 26 HOH HOH . O 12 HOH D 5 505 35 HOH HOH . O 12 HOH D 6 506 36 HOH HOH . O 12 HOH D 7 507 44 HOH HOH . O 12 HOH D 8 508 46 HOH HOH . O 12 HOH D 9 509 52 HOH HOH . O 12 HOH D 10 510 57 HOH HOH . O 12 HOH D 11 511 59 HOH HOH . O 12 HOH D 12 512 61 HOH HOH . O 12 HOH D 13 513 75 HOH HOH . O 12 HOH D 14 514 83 HOH HOH . O 12 HOH D 15 515 104 HOH HOH . O 12 HOH D 16 516 114 HOH HOH . O 12 HOH D 17 517 117 HOH HOH . O 12 HOH D 18 518 119 HOH HOH . P 12 HOH G 1 401 1 HOH HOH . P 12 HOH G 2 402 2 HOH HOH . P 12 HOH G 3 403 4 HOH HOH . P 12 HOH G 4 404 5 HOH HOH . P 12 HOH G 5 405 10 HOH HOH . P 12 HOH G 6 406 14 HOH HOH . P 12 HOH G 7 407 15 HOH HOH . P 12 HOH G 8 408 17 HOH HOH . P 12 HOH G 9 409 18 HOH HOH . P 12 HOH G 10 410 22 HOH HOH . P 12 HOH G 11 411 25 HOH HOH . P 12 HOH G 12 412 27 HOH HOH . P 12 HOH G 13 413 29 HOH HOH . P 12 HOH G 14 414 30 HOH HOH . P 12 HOH G 15 415 37 HOH HOH . P 12 HOH G 16 416 39 HOH HOH . P 12 HOH G 17 417 41 HOH HOH . P 12 HOH G 18 418 49 HOH HOH . P 12 HOH G 19 419 51 HOH HOH . P 12 HOH G 20 420 54 HOH HOH . P 12 HOH G 21 421 60 HOH HOH . P 12 HOH G 22 422 62 HOH HOH . P 12 HOH G 23 423 63 HOH HOH . P 12 HOH G 24 424 65 HOH HOH . P 12 HOH G 25 425 66 HOH HOH . P 12 HOH G 26 426 68 HOH HOH . P 12 HOH G 27 427 71 HOH HOH . P 12 HOH G 28 428 72 HOH HOH . P 12 HOH G 29 429 78 HOH HOH . P 12 HOH G 30 430 79 HOH HOH . P 12 HOH G 31 431 81 HOH HOH . P 12 HOH G 32 432 86 HOH HOH . P 12 HOH G 33 433 89 HOH HOH . P 12 HOH G 34 434 91 HOH HOH . P 12 HOH G 35 435 94 HOH HOH . P 12 HOH G 36 436 98 HOH HOH . P 12 HOH G 37 437 100 HOH HOH . P 12 HOH G 38 438 106 HOH HOH . P 12 HOH G 39 439 110 HOH HOH . P 12 HOH G 40 440 120 HOH HOH . P 12 HOH G 41 441 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMA . . . I 8 -10.456 -8.978 7.092 1 176.76 ? C1 BMA 306 A 1 HETATM 2 C C2 BMA . . . I 8 -10.49 -8.401 8.479 1 176.91 ? C2 BMA 306 A 1 HETATM 3 C C3 BMA . . . I 8 -11.783 -8.621 9.171 1 178.63 ? C3 BMA 306 A 1 HETATM 4 C C4 BMA . . . I 8 -12.969 -8.504 8.436 1 180.26 ? C4 BMA 306 A 1 HETATM 5 C C5 BMA . . . I 8 -12.885 -8.926 6.986 1 180.21 ? C5 BMA 306 A 1 HETATM 6 C C6 BMA . . . I 8 -14.012 -8.344 6.15 1 182.09 ? C6 BMA 306 A 1 HETATM 7 O O2 BMA . . . I 8 -10.104 -7.033 8.428 1 177.51 ? O2 BMA 306 A 1 HETATM 8 O O3 BMA . . . I 8 -11.825 -7.757 10.281 1 179.63 ? O3 BMA 306 A 1 HETATM 9 O O4 BMA . . . I 8 -13.875 -9.378 9.097 1 180.34 ? O4 BMA 306 A 1 HETATM 10 O O5 BMA . . . I 8 -11.589 -8.661 6.339 1 178.99 ? O5 BMA 306 A 1 HETATM 11 O O6 BMA . . . I 8 -13.834 -8.223 4.784 1 181.59 ? O6 BMA 306 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #