data_4LHZ # _model_server_result.job_id YMNz0an-rFqaqrA64B-5Bw _model_server_result.datetime_utc '2024-12-16 18:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 4LHZ # _exptl.entry_id 4LHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LHZ _cell.length_a 81.337 _cell.length_b 165.561 _cell.length_c 167.263 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,C,D,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 4LHZ _atom_sites.fract_transf_matrix[1][1] 0.012295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GTP A 1 201 201 GTP GTP . H 3 GTP B 1 201 201 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . H 3 20.609 -43.008 -77.442 1 64.95 ? PG GTP 201 B 1 HETATM 2 O O1G GTP . . . H 3 21.114 -44.259 -78.138 1 65.12 ? O1G GTP 201 B 1 HETATM 3 O O2G GTP . . . H 3 21.013 -43.218 -75.992 1 65 ? O2G GTP 201 B 1 HETATM 4 O O3G GTP . . . H 3 21.163 -41.688 -77.983 1 64.53 ? O3G GTP 201 B 1 HETATM 5 O O3B GTP . . . H 3 19.049 -42.9 -77.749 1 59.06 ? O3B GTP 201 B 1 HETATM 6 P PB GTP . . . H 3 18.061 -42.313 -76.686 1 55.9 ? PB GTP 201 B 1 HETATM 7 O O1B GTP . . . H 3 16.797 -42.224 -77.439 1 57.64 ? O1B GTP 201 B 1 HETATM 8 O O2B GTP . . . H 3 18.446 -41.05 -75.952 1 55.91 ? O2B GTP 201 B 1 HETATM 9 O O3A GTP . . . H 3 17.963 -43.496 -75.649 1 60.93 ? O3A GTP 201 B 1 HETATM 10 P PA GTP . . . H 3 17.812 -44.997 -76.173 1 64.85 ? PA GTP 201 B 1 HETATM 11 O O1A GTP . . . H 3 19.08 -45.392 -76.907 1 64.82 ? O1A GTP 201 B 1 HETATM 12 O O2A GTP . . . H 3 16.557 -45.075 -77.004 1 65.82 ? O2A GTP 201 B 1 HETATM 13 O O5' GTP . . . H 3 17.643 -45.915 -74.848 1 67.53 ? O5' GTP 201 B 1 HETATM 14 C C5' GTP . . . H 3 18.7 -45.942 -73.917 1 71.05 ? C5' GTP 201 B 1 HETATM 15 C C4' GTP . . . H 3 18.564 -47.09 -72.945 1 73.9 ? C4' GTP 201 B 1 HETATM 16 O O4' GTP . . . H 3 17.479 -46.861 -72.082 1 75.31 ? O4' GTP 201 B 1 HETATM 17 C C3' GTP . . . H 3 18.308 -48.408 -73.66 1 76.2 ? C3' GTP 201 B 1 HETATM 18 O O3' GTP . . . H 3 19.132 -49.42 -73.128 1 77.7 ? O3' GTP 201 B 1 HETATM 19 C C2' GTP . . . H 3 16.884 -48.778 -73.354 1 77.13 ? C2' GTP 201 B 1 HETATM 20 O O2' GTP . . . H 3 16.778 -50.172 -73.147 1 78.95 ? O2' GTP 201 B 1 HETATM 21 C C1' GTP . . . H 3 16.622 -47.994 -72.08 1 76.95 ? C1' GTP 201 B 1 HETATM 22 N N9 GTP . . . H 3 15.233 -47.545 -71.994 1 76.67 ? N9 GTP 201 B 1 HETATM 23 C C8 GTP . . . H 3 14.576 -46.791 -72.914 1 76.66 ? C8 GTP 201 B 1 HETATM 24 N N7 GTP . . . H 3 13.335 -46.578 -72.456 1 76.41 ? N7 GTP 201 B 1 HETATM 25 C C5 GTP . . . H 3 13.198 -47.169 -71.26 1 76.78 ? C5 GTP 201 B 1 HETATM 26 C C6 GTP . . . H 3 12.124 -47.253 -70.367 1 78.02 ? C6 GTP 201 B 1 HETATM 27 O O6 GTP . . . H 3 11.027 -46.71 -70.628 1 77.44 ? O6 GTP 201 B 1 HETATM 28 N N1 GTP . . . H 3 12.302 -47.95 -69.171 1 77.36 ? N1 GTP 201 B 1 HETATM 29 C C2 GTP . . . H 3 13.507 -48.568 -68.904 1 76.52 ? C2 GTP 201 B 1 HETATM 30 N N2 GTP . . . H 3 13.628 -49.238 -67.767 1 76.66 ? N2 GTP 201 B 1 HETATM 31 N N3 GTP . . . H 3 14.555 -48.475 -69.797 1 76.32 ? N3 GTP 201 B 1 HETATM 32 C C4 GTP . . . H 3 14.394 -47.79 -70.953 1 76.23 ? C4 GTP 201 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #