data_4LJ6 # _model_server_result.job_id xU82EgvZfoOtyJ14rT8yTQ _model_server_result.datetime_utc '2024-11-14 19:40:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4LJ6 # _exptl.entry_id 4LJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LJ6 _cell.length_a 74.05 _cell.length_b 74.05 _cell.length_c 118.67 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 4LJ6 _atom_sites.fract_transf_matrix[1][1] 0.013504 _atom_sites.fract_transf_matrix[1][2] 0.007797 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACP A 1 901 1 ACP ACP . C 3 PO4 A 1 902 4285 PO4 PO4 . D 4 HOH A 1 1001 3 HOH HOH . D 4 HOH A 2 1002 4 HOH HOH . D 4 HOH A 3 1003 5 HOH HOH . D 4 HOH A 4 1004 7 HOH HOH . D 4 HOH A 5 1005 11 HOH HOH . D 4 HOH A 6 1006 13 HOH HOH . D 4 HOH A 7 1007 14 HOH HOH . D 4 HOH A 8 1008 15 HOH HOH . D 4 HOH A 9 1009 16 HOH HOH . D 4 HOH A 10 1010 18 HOH HOH . D 4 HOH A 11 1011 19 HOH HOH . D 4 HOH A 12 1012 20 HOH HOH . D 4 HOH A 13 1013 21 HOH HOH . D 4 HOH A 14 1014 24 HOH HOH . D 4 HOH A 15 1015 26 HOH HOH . D 4 HOH A 16 1016 27 HOH HOH . D 4 HOH A 17 1017 29 HOH HOH . D 4 HOH A 18 1018 32 HOH HOH . D 4 HOH A 19 1019 34 HOH HOH . D 4 HOH A 20 1020 37 HOH HOH . D 4 HOH A 21 1021 2 HOH HOH . D 4 HOH A 22 1022 3 HOH HOH . D 4 HOH A 23 1023 4 HOH HOH . D 4 HOH A 24 1024 5 HOH HOH . D 4 HOH A 25 1025 8 HOH HOH . D 4 HOH A 26 1026 10 HOH HOH . D 4 HOH A 27 1027 11 HOH HOH . D 4 HOH A 28 1028 12 HOH HOH . D 4 HOH A 29 1029 13 HOH HOH . D 4 HOH A 30 1030 14 HOH HOH . D 4 HOH A 31 1031 15 HOH HOH . D 4 HOH A 32 1032 16 HOH HOH . D 4 HOH A 33 1033 17 HOH HOH . D 4 HOH A 34 1034 18 HOH HOH . D 4 HOH A 35 1035 20 HOH HOH . D 4 HOH A 36 1036 21 HOH HOH . D 4 HOH A 37 1037 22 HOH HOH . D 4 HOH A 38 1038 24 HOH HOH . D 4 HOH A 39 1039 26 HOH HOH . D 4 HOH A 40 1040 28 HOH HOH . D 4 HOH A 41 1041 30 HOH HOH . D 4 HOH A 42 1042 33 HOH HOH . D 4 HOH A 43 1043 34 HOH HOH . D 4 HOH A 44 1044 37 HOH HOH . D 4 HOH A 45 1045 38 HOH HOH . D 4 HOH A 46 1046 40 HOH HOH . D 4 HOH A 47 1047 41 HOH HOH . D 4 HOH A 48 1048 42 HOH HOH . D 4 HOH A 49 1049 43 HOH HOH . D 4 HOH A 50 1050 44 HOH HOH . D 4 HOH A 51 1051 47 HOH HOH . D 4 HOH A 52 1052 48 HOH HOH . D 4 HOH A 53 1053 49 HOH HOH . D 4 HOH A 54 1054 52 HOH HOH . D 4 HOH A 55 1055 53 HOH HOH . D 4 HOH A 56 1056 54 HOH HOH . D 4 HOH A 57 1057 55 HOH HOH . D 4 HOH A 58 1058 56 HOH HOH . D 4 HOH A 59 1059 59 HOH HOH . D 4 HOH A 60 1060 64 HOH HOH . D 4 HOH A 61 1061 65 HOH HOH . D 4 HOH A 62 1062 66 HOH HOH . D 4 HOH A 63 1063 67 HOH HOH . D 4 HOH A 64 1064 69 HOH HOH . D 4 HOH A 65 1065 72 HOH HOH . D 4 HOH A 66 1066 73 HOH HOH . D 4 HOH A 67 1067 75 HOH HOH . D 4 HOH A 68 1068 76 HOH HOH . D 4 HOH A 69 1069 79 HOH HOH . D 4 HOH A 70 1070 82 HOH HOH . D 4 HOH A 71 1071 83 HOH HOH . D 4 HOH A 72 1072 84 HOH HOH . D 4 HOH A 73 1073 86 HOH HOH . D 4 HOH A 74 1074 89 HOH HOH . D 4 HOH A 75 1075 91 HOH HOH . D 4 HOH A 76 1076 97 HOH HOH . D 4 HOH A 77 1077 100 HOH HOH . D 4 HOH A 78 1078 110 HOH HOH . D 4 HOH A 79 1079 114 HOH HOH . D 4 HOH A 80 1080 115 HOH HOH . D 4 HOH A 81 1081 116 HOH HOH . D 4 HOH A 82 1082 117 HOH HOH . D 4 HOH A 83 1083 118 HOH HOH . D 4 HOH A 84 1084 120 HOH HOH . D 4 HOH A 85 1085 121 HOH HOH . D 4 HOH A 86 1086 129 HOH HOH . D 4 HOH A 87 1087 130 HOH HOH . D 4 HOH A 88 1088 132 HOH HOH . D 4 HOH A 89 1089 136 HOH HOH . D 4 HOH A 90 1090 141 HOH HOH . D 4 HOH A 91 1091 142 HOH HOH . D 4 HOH A 92 1092 143 HOH HOH . D 4 HOH A 93 1093 144 HOH HOH . D 4 HOH A 94 1094 147 HOH HOH . D 4 HOH A 95 1095 149 HOH HOH . D 4 HOH A 96 1096 150 HOH HOH . D 4 HOH A 97 1097 155 HOH HOH . D 4 HOH A 98 1098 160 HOH HOH . D 4 HOH A 99 1099 163 HOH HOH . D 4 HOH A 100 1100 166 HOH HOH . D 4 HOH A 101 1101 167 HOH HOH . D 4 HOH A 102 1102 169 HOH HOH . D 4 HOH A 103 1103 171 HOH HOH . D 4 HOH A 104 1104 185 HOH HOH . D 4 HOH A 105 1105 190 HOH HOH . D 4 HOH A 106 1106 191 HOH HOH . D 4 HOH A 107 1107 192 HOH HOH . D 4 HOH A 108 1108 193 HOH HOH . D 4 HOH A 109 1109 194 HOH HOH . D 4 HOH A 110 1110 195 HOH HOH . D 4 HOH A 111 1111 197 HOH HOH . D 4 HOH A 112 1112 198 HOH HOH . D 4 HOH A 113 1113 199 HOH HOH . D 4 HOH A 114 1114 200 HOH HOH . D 4 HOH A 115 1115 201 HOH HOH . D 4 HOH A 116 1116 202 HOH HOH . D 4 HOH A 117 1117 203 HOH HOH . D 4 HOH A 118 1118 204 HOH HOH . D 4 HOH A 119 1119 205 HOH HOH . D 4 HOH A 120 1120 206 HOH HOH . D 4 HOH A 121 1121 207 HOH HOH . D 4 HOH A 122 1122 208 HOH HOH . D 4 HOH A 123 1123 210 HOH HOH . D 4 HOH A 124 1124 211 HOH HOH . D 4 HOH A 125 1125 212 HOH HOH . D 4 HOH A 126 1126 213 HOH HOH . D 4 HOH A 127 1127 214 HOH HOH . D 4 HOH A 128 1128 215 HOH HOH . D 4 HOH A 129 1129 216 HOH HOH . D 4 HOH A 130 1130 217 HOH HOH . D 4 HOH A 131 1131 218 HOH HOH . D 4 HOH A 132 1132 219 HOH HOH . D 4 HOH A 133 1133 220 HOH HOH . D 4 HOH A 134 1134 221 HOH HOH . D 4 HOH A 135 1135 222 HOH HOH . D 4 HOH A 136 1136 223 HOH HOH . D 4 HOH A 137 1137 224 HOH HOH . D 4 HOH A 138 1138 225 HOH HOH . D 4 HOH A 139 1139 226 HOH HOH . D 4 HOH A 140 1140 227 HOH HOH . D 4 HOH A 141 1141 228 HOH HOH . D 4 HOH A 142 1142 229 HOH HOH . D 4 HOH A 143 1143 230 HOH HOH . D 4 HOH A 144 1144 231 HOH HOH . D 4 HOH A 145 1145 232 HOH HOH . D 4 HOH A 146 1146 233 HOH HOH . D 4 HOH A 147 1147 235 HOH HOH . D 4 HOH A 148 1148 237 HOH HOH . D 4 HOH A 149 1149 238 HOH HOH . D 4 HOH A 150 1150 239 HOH HOH . D 4 HOH A 151 1151 240 HOH HOH . D 4 HOH A 152 1152 242 HOH HOH . D 4 HOH A 153 1153 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . B 2 -6.503 24.376 -7.614 1 34.5 ? PG ACP 901 A 1 HETATM 2 O O1G ACP . . . B 2 -5.061 24.033 -7.35 1 34.39 ? O1G ACP 901 A 1 HETATM 3 O O2G ACP . . . B 2 -6.969 23.917 -8.984 1 35.77 ? O2G ACP 901 A 1 HETATM 4 O O3G ACP . . . B 2 -7.477 23.964 -6.542 1 33.99 ? O3G ACP 901 A 1 HETATM 5 P PB ACP . . . B 2 -5.756 27.055 -6.339 1 27.51 ? PB ACP 901 A 1 HETATM 6 O O1B ACP . . . B 2 -4.327 27.371 -6.68 1 25.47 ? O1B ACP 901 A 1 HETATM 7 O O2B ACP . . . B 2 -5.997 26.334 -5.052 1 26.73 ? O2B ACP 901 A 1 HETATM 8 C C3B ACP . . . B 2 -6.56 26.184 -7.719 1 30.24 ? C3B ACP 901 A 1 HETATM 9 P PA ACP . . . B 2 -6.496 29.666 -7.309 1 22.84 ? PA ACP 901 A 1 HETATM 10 O O1A ACP . . . B 2 -5.421 30.639 -6.914 1 21.88 ? O1A ACP 901 A 1 HETATM 11 O O2A ACP . . . B 2 -6.486 29.153 -8.719 1 24.01 ? O2A ACP 901 A 1 HETATM 12 O O3A ACP . . . B 2 -6.571 28.451 -6.259 1 25.29 ? O3A ACP 901 A 1 HETATM 13 O O5' ACP . . . B 2 -7.921 30.364 -7.01 1 22.89 ? O5' ACP 901 A 1 HETATM 14 C C5' ACP . . . B 2 -9.124 29.936 -7.653 1 22.36 ? C5' ACP 901 A 1 HETATM 15 C C4' ACP . . . B 2 -9.776 31.112 -8.36 1 24 ? C4' ACP 901 A 1 HETATM 16 O O4' ACP . . . B 2 -10.343 31.973 -7.372 1 22.17 ? O4' ACP 901 A 1 HETATM 17 C C3' ACP . . . B 2 -8.82 31.969 -9.179 1 25.72 ? C3' ACP 901 A 1 HETATM 18 O O3' ACP . . . B 2 -8.92 31.68 -10.567 1 29.62 ? O3' ACP 901 A 1 HETATM 19 C C2' ACP . . . B 2 -9.24 33.388 -8.907 1 25.35 ? C2' ACP 901 A 1 HETATM 20 O O2' ACP . . . B 2 -10.233 33.811 -9.855 1 28.54 ? O2' ACP 901 A 1 HETATM 21 C C1' ACP . . . B 2 -9.896 33.309 -7.545 1 21.36 ? C1' ACP 901 A 1 HETATM 22 N N9 ACP . . . B 2 -8.988 33.64 -6.417 1 20.08 ? N9 ACP 901 A 1 HETATM 23 C C8 ACP . . . B 2 -8.722 32.832 -5.381 1 19.92 ? C8 ACP 901 A 1 HETATM 24 N N7 ACP . . . B 2 -7.867 33.418 -4.516 1 19.62 ? N7 ACP 901 A 1 HETATM 25 C C5 ACP . . . B 2 -7.579 34.628 -5.001 1 19.12 ? C5 ACP 901 A 1 HETATM 26 C C6 ACP . . . B 2 -6.742 35.759 -4.575 1 19.78 ? C6 ACP 901 A 1 HETATM 27 N N6 ACP . . . B 2 -6.031 35.695 -3.433 1 19.98 ? N6 ACP 901 A 1 HETATM 28 N N1 ACP . . . B 2 -6.708 36.849 -5.357 1 20.54 ? N1 ACP 901 A 1 HETATM 29 C C2 ACP . . . B 2 -7.424 36.911 -6.502 1 19.97 ? C2 ACP 901 A 1 HETATM 30 N N3 ACP . . . B 2 -8.202 35.917 -6.944 1 20.12 ? N3 ACP 901 A 1 HETATM 31 C C4 ACP . . . B 2 -8.324 34.769 -6.253 1 18.99 ? C4 ACP 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #