data_4LJ7 # _model_server_result.job_id gsOug6acjz0FoLXeVUJwWA _model_server_result.datetime_utc '2024-10-11 02:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 4LJ7 # _exptl.entry_id 4LJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 544.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'(3')-O-N-METHYLANTHRANILOYL-ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LJ7 _cell.length_a 65.69 _cell.length_b 103.88 _cell.length_c 159.11 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,F,G 2 1 C,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C18 H22 N6 O10 P2' _chem_comp.formula_weight 544.349 _chem_comp.id MNT _chem_comp.mon_nstd_flag . _chem_comp.name "2'(3')-O-N-METHYLANTHRANILOYL-ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MANT-ADP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B MNT doub 222 n n PB O2B MNT sing 223 n n PB O3B MNT sing 224 n n PB O3A MNT sing 225 n n O2B HOB2 MNT sing 226 n n O3B HOB3 MNT sing 227 n n PA O1A MNT doub 228 n n PA O2A MNT sing 229 n n PA O3A MNT sing 230 n n PA O5' MNT sing 231 n n O2A HOA2 MNT sing 232 n n O5' C5B MNT sing 233 n n C5B C4B MNT sing 234 n n C5B "H5'1" MNT sing 235 n n C5B "H5'2" MNT sing 236 n n C4B O4' MNT sing 237 n n C4B C3B MNT sing 238 n n C4B H4B MNT sing 239 n n O4' C1B MNT sing 240 n n C3B O3' MNT sing 241 n n C3B C2B MNT sing 242 n n C3B H3B MNT sing 243 n n O3' C' MNT sing 244 n n C2B C1B MNT sing 245 n n C2B "H2'1" MNT sing 246 n n C2B "H2'2" MNT sing 247 n n C1B N9 MNT sing 248 n n C1B H1' MNT sing 249 n n N9 C8 MNT sing 250 n y N9 C4 MNT sing 251 n y C8 N7 MNT doub 252 n y C8 H8 MNT sing 253 n n N7 C5 MNT sing 254 n y C5 C6 MNT sing 255 n y C5 C4 MNT doub 256 n y C6 N6 MNT sing 257 n n C6 N1 MNT doub 258 n y N6 HN61 MNT sing 259 n n N6 HN62 MNT sing 260 n n N1 C2 MNT sing 261 n y C2 N3 MNT doub 262 n y C2 H2 MNT sing 263 n n N3 C4 MNT sing 264 n y C' O1' MNT doub 265 n n C' C1' MNT sing 266 n n C1' C2' MNT doub 267 n y C1' C6' MNT sing 268 n y C2' N2' MNT sing 269 n n C2' C3' MNT sing 270 n y N2' CM' MNT sing 271 n n N2' HN2' MNT sing 272 n n CM' "HM'1" MNT sing 273 n n CM' "HM'2" MNT sing 274 n n CM' "HM'3" MNT sing 275 n n C3' C4' MNT doub 276 n y C3' H3' MNT sing 277 n n C4' C5' MNT sing 278 n y C4' H4' MNT sing 279 n n C5' C6' MNT doub 280 n y C5' H5' MNT sing 281 n n C6' H6' MNT sing 282 n n # _atom_sites.entry_id 4LJ7 _atom_sites.fract_transf_matrix[1][1] 0.015223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MNT A 1 901 1 MNT MNT . E 3 PO4 A 1 902 1 PO4 PO4 . F 2 MNT B 1 901 2 MNT MNT . G 3 PO4 B 1 902 2 PO4 PO4 . H 2 MNT C 1 901 3 MNT MNT . I 3 PO4 C 1 902 3 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB MNT . . . F 2 -4.373 7.743 4.944 1 65.17 ? PB MNT 901 B 1 HETATM 2 O O1B MNT . . . F 2 -5.345 8.181 3.876 1 65.3 ? O1B MNT 901 B 1 HETATM 3 O O2B MNT . . . F 2 -2.949 8.165 4.688 1 65 ? O2B MNT 901 B 1 HETATM 4 O O3B MNT . . . F 2 -4.532 6.298 5.334 1 65.12 ? O3B MNT 901 B 1 HETATM 5 P PA MNT . . . F 2 -6.299 8.824 6.734 1 63.75 ? PA MNT 901 B 1 HETATM 6 O O1A MNT . . . F 2 -7.246 8.113 5.794 1 63.39 ? O1A MNT 901 B 1 HETATM 7 O O2A MNT . . . F 2 -6.391 8.529 8.214 1 63.71 ? O2A MNT 901 B 1 HETATM 8 O O3A MNT . . . F 2 -4.772 8.57 6.275 1 64.4 ? O3A MNT 901 B 1 HETATM 9 O O5' MNT . . . F 2 -6.464 10.414 6.505 1 62.89 ? O5' MNT 901 B 1 HETATM 10 C C5B MNT . . . F 2 -5.997 11.364 7.466 1 61.58 ? C5B MNT 901 B 1 HETATM 11 C C4B MNT . . . F 2 -7.159 12.184 8.03 1 60.7 ? C4B MNT 901 B 1 HETATM 12 O O4' MNT . . . F 2 -7.957 12.726 6.976 1 60 ? O4' MNT 901 B 1 HETATM 13 C C3B MNT . . . F 2 -8.08 11.337 8.893 1 60.61 ? C3B MNT 901 B 1 HETATM 14 O O3' MNT . . . F 2 -8.348 11.965 10.147 1 61.3 ? O3' MNT 901 B 1 HETATM 15 C C2B MNT . . . F 2 -9.382 11.213 8.129 1 60.08 ? C2B MNT 901 B 1 HETATM 16 C C1B MNT . . . F 2 -9.329 12.342 7.112 1 59.65 ? C1B MNT 901 B 1 HETATM 17 N N9 MNT . . . F 2 -9.868 11.898 5.803 1 59.07 ? N9 MNT 901 B 1 HETATM 18 C C8 MNT . . . F 2 -9.144 11.712 4.686 1 58.82 ? C8 MNT 901 B 1 HETATM 19 N N7 MNT . . . F 2 -9.927 11.315 3.657 1 58.6 ? N7 MNT 901 B 1 HETATM 20 C C5 MNT . . . F 2 -11.187 11.237 4.108 1 58.48 ? C5 MNT 901 B 1 HETATM 21 C C6 MNT . . . F 2 -12.505 10.876 3.534 1 58.36 ? C6 MNT 901 B 1 HETATM 22 N N6 MNT . . . F 2 -12.624 10.507 2.237 1 58.11 ? N6 MNT 901 B 1 HETATM 23 N N1 MNT . . . F 2 -13.582 10.93 4.35 1 58.48 ? N1 MNT 901 B 1 HETATM 24 C C2 MNT . . . F 2 -13.473 11.298 5.643 1 58.55 ? C2 MNT 901 B 1 HETATM 25 N N3 MNT . . . F 2 -12.306 11.634 6.229 1 58.68 ? N3 MNT 901 B 1 HETATM 26 C C4 MNT . . . F 2 -11.147 11.626 5.526 1 58.69 ? C4 MNT 901 B 1 HETATM 27 C C' MNT . . . F 2 -7.591 11.733 11.209 1 61.96 ? C' MNT 901 B 1 HETATM 28 O O1' MNT . . . F 2 -6.608 10.979 11.162 1 62.05 ? O1' MNT 901 B 1 HETATM 29 C C1' MNT . . . F 2 -8.008 12.455 12.45 1 62.55 ? C1' MNT 901 B 1 HETATM 30 C C2' MNT . . . F 2 -7.254 12.278 13.653 1 63.12 ? C2' MNT 901 B 1 HETATM 31 N N2' MNT . . . F 2 -6.146 11.459 13.715 1 63.52 ? N2' MNT 901 B 1 HETATM 32 C CM' MNT . . . F 2 -5.313 11.215 14.888 1 64.01 ? CM' MNT 901 B 1 HETATM 33 C C3' MNT . . . F 2 -7.734 13.018 14.801 1 63.19 ? C3' MNT 901 B 1 HETATM 34 C C4' MNT . . . F 2 -8.824 13.818 14.741 1 63.09 ? C4' MNT 901 B 1 HETATM 35 C C5' MNT . . . F 2 -9.556 13.994 13.581 1 62.72 ? C5' MNT 901 B 1 HETATM 36 C C6' MNT . . . F 2 -9.13 13.294 12.424 1 62.53 ? C6' MNT 901 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #