data_4LJI # _model_server_result.job_id NbTdwciHBFD6QvXWSiSE8Q _model_server_result.datetime_utc '2025-02-16 22:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4LJI # _exptl.entry_id 4LJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.86 _cell.angle_beta 82.22 _cell.angle_gamma 69.38 _cell.entry_id 4LJI _cell.length_a 38.421 _cell.length_b 38.43 _cell.length_c 47.779 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 47 A CYS 47 1_555 C CAB HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.667 ? covale ? covale2 A SG CYS 50 A CYS 50 1_555 C CAC HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? covale ? covale3 B SG CYS 47 B CYS 47 1_555 E CAB HEC . B HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? covale ? covale4 B SG CYS 50 B CYS 50 1_555 E CAC HEC . B HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 C FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A SG CYS 101 A CYS 101 1_555 C FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 B NE2 HIS 51 B HIS 51 1_555 E FE HEC . B HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc4 B SG CYS 101 B CYS 101 1_555 E FE HEC . B HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 4LJI _atom_sites.fract_transf_matrix[1][1] 0.026027 _atom_sites.fract_transf_matrix[1][2] -0.009793 _atom_sites.fract_transf_matrix[1][3] -0.000805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027802 _atom_sites.fract_transf_matrix[2][3] -0.008245 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 301 301 HEC HEM . D 3 CL A 1 302 302 CL CL . E 2 HEC B 1 301 301 HEC HEM . F 4 HOH A 1 401 1 HOH HOH . F 4 HOH A 2 402 2 HOH HOH . F 4 HOH A 3 403 4 HOH HOH . F 4 HOH A 4 404 8 HOH HOH . F 4 HOH A 5 405 11 HOH HOH . F 4 HOH A 6 406 12 HOH HOH . F 4 HOH A 7 407 13 HOH HOH . F 4 HOH A 8 408 14 HOH HOH . F 4 HOH A 9 409 15 HOH HOH . F 4 HOH A 10 410 16 HOH HOH . F 4 HOH A 11 411 19 HOH HOH . F 4 HOH A 12 412 20 HOH HOH . F 4 HOH A 13 413 21 HOH HOH . F 4 HOH A 14 414 23 HOH HOH . F 4 HOH A 15 415 24 HOH HOH . F 4 HOH A 16 416 25 HOH HOH . F 4 HOH A 17 417 29 HOH HOH . F 4 HOH A 18 418 30 HOH HOH . F 4 HOH A 19 419 31 HOH HOH . F 4 HOH A 20 420 32 HOH HOH . F 4 HOH A 21 421 34 HOH HOH . F 4 HOH A 22 422 35 HOH HOH . F 4 HOH A 23 423 37 HOH HOH . F 4 HOH A 24 424 39 HOH HOH . F 4 HOH A 25 425 40 HOH HOH . F 4 HOH A 26 426 45 HOH HOH . F 4 HOH A 27 427 46 HOH HOH . F 4 HOH A 28 428 47 HOH HOH . F 4 HOH A 29 429 48 HOH HOH . F 4 HOH A 30 430 50 HOH HOH . F 4 HOH A 31 431 52 HOH HOH . F 4 HOH A 32 432 55 HOH HOH . F 4 HOH A 33 433 56 HOH HOH . F 4 HOH A 34 434 61 HOH HOH . F 4 HOH A 35 435 62 HOH HOH . F 4 HOH A 36 436 63 HOH HOH . F 4 HOH A 37 437 65 HOH HOH . F 4 HOH A 38 438 68 HOH HOH . F 4 HOH A 39 439 69 HOH HOH . F 4 HOH A 40 440 71 HOH HOH . F 4 HOH A 41 441 74 HOH HOH . F 4 HOH A 42 442 75 HOH HOH . F 4 HOH A 43 443 78 HOH HOH . F 4 HOH A 44 444 80 HOH HOH . F 4 HOH A 45 445 81 HOH HOH . F 4 HOH A 46 446 82 HOH HOH . F 4 HOH A 47 447 84 HOH HOH . F 4 HOH A 48 448 85 HOH HOH . F 4 HOH A 49 449 86 HOH HOH . F 4 HOH A 50 450 87 HOH HOH . F 4 HOH A 51 451 88 HOH HOH . F 4 HOH A 52 452 89 HOH HOH . F 4 HOH A 53 453 92 HOH HOH . F 4 HOH A 54 454 94 HOH HOH . F 4 HOH A 55 455 97 HOH HOH . F 4 HOH A 56 456 98 HOH HOH . F 4 HOH A 57 457 99 HOH HOH . F 4 HOH A 58 458 102 HOH HOH . F 4 HOH A 59 459 106 HOH HOH . F 4 HOH A 60 460 107 HOH HOH . F 4 HOH A 61 461 108 HOH HOH . F 4 HOH A 62 462 110 HOH HOH . F 4 HOH A 63 463 111 HOH HOH . F 4 HOH A 64 464 113 HOH HOH . F 4 HOH A 65 465 115 HOH HOH . F 4 HOH A 66 466 116 HOH HOH . F 4 HOH A 67 467 117 HOH HOH . F 4 HOH A 68 468 118 HOH HOH . F 4 HOH A 69 469 119 HOH HOH . F 4 HOH A 70 470 121 HOH HOH . G 4 HOH B 1 401 3 HOH HOH . G 4 HOH B 2 402 5 HOH HOH . G 4 HOH B 3 403 6 HOH HOH . G 4 HOH B 4 404 7 HOH HOH . G 4 HOH B 5 405 9 HOH HOH . G 4 HOH B 6 406 10 HOH HOH . G 4 HOH B 7 407 17 HOH HOH . G 4 HOH B 8 408 18 HOH HOH . G 4 HOH B 9 409 22 HOH HOH . G 4 HOH B 10 410 26 HOH HOH . G 4 HOH B 11 411 27 HOH HOH . G 4 HOH B 12 412 28 HOH HOH . G 4 HOH B 13 413 33 HOH HOH . G 4 HOH B 14 414 36 HOH HOH . G 4 HOH B 15 415 38 HOH HOH . G 4 HOH B 16 416 41 HOH HOH . G 4 HOH B 17 417 42 HOH HOH . G 4 HOH B 18 418 43 HOH HOH . G 4 HOH B 19 419 44 HOH HOH . G 4 HOH B 20 420 49 HOH HOH . G 4 HOH B 21 421 51 HOH HOH . G 4 HOH B 22 422 53 HOH HOH . G 4 HOH B 23 423 54 HOH HOH . G 4 HOH B 24 424 57 HOH HOH . G 4 HOH B 25 425 58 HOH HOH . G 4 HOH B 26 426 59 HOH HOH . G 4 HOH B 27 427 60 HOH HOH . G 4 HOH B 28 428 64 HOH HOH . G 4 HOH B 29 429 66 HOH HOH . G 4 HOH B 30 430 67 HOH HOH . G 4 HOH B 31 431 70 HOH HOH . G 4 HOH B 32 432 72 HOH HOH . G 4 HOH B 33 433 73 HOH HOH . G 4 HOH B 34 434 76 HOH HOH . G 4 HOH B 35 435 77 HOH HOH . G 4 HOH B 36 436 79 HOH HOH . G 4 HOH B 37 437 83 HOH HOH . G 4 HOH B 38 438 90 HOH HOH . G 4 HOH B 39 439 91 HOH HOH . G 4 HOH B 40 440 93 HOH HOH . G 4 HOH B 41 441 95 HOH HOH . G 4 HOH B 42 442 96 HOH HOH . G 4 HOH B 43 443 100 HOH HOH . G 4 HOH B 44 444 101 HOH HOH . G 4 HOH B 45 445 103 HOH HOH . G 4 HOH B 46 446 104 HOH HOH . G 4 HOH B 47 447 105 HOH HOH . G 4 HOH B 48 448 109 HOH HOH . G 4 HOH B 49 449 112 HOH HOH . G 4 HOH B 50 450 114 HOH HOH . G 4 HOH B 51 451 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 2 7.721 -1.573 -6.196 1 13.64 ? FE HEC 301 B 1 HETATM 2 C CHA HEC . . . E 2 10.086 -0.84 -8.597 1 12.98 ? CHA HEC 301 B 1 HETATM 3 C CHB HEC . . . E 2 7.202 -4.624 -7.603 1 12.57 ? CHB HEC 301 B 1 HETATM 4 C CHC HEC . . . E 2 5.619 -2.447 -3.521 1 13.9 ? CHC HEC 301 B 1 HETATM 5 C CHD HEC . . . E 2 7.77 1.627 -5.096 1 13.66 ? CHD HEC 301 B 1 HETATM 6 N NA HEC . . . E 2 8.436 -2.538 -7.804 1 12.79 ? NA HEC 301 B 1 HETATM 7 C C1A HEC . . . E 2 9.418 -2.054 -8.654 1 12.74 ? C1A HEC 301 B 1 HETATM 8 C C2A HEC . . . E 2 9.615 -3.019 -9.683 1 13.79 ? C2A HEC 301 B 1 HETATM 9 C C3A HEC . . . E 2 8.827 -4.097 -9.423 1 12.64 ? C3A HEC 301 B 1 HETATM 10 C C4A HEC . . . E 2 8.12 -3.807 -8.223 1 16.29 ? C4A HEC 301 B 1 HETATM 11 C CMA HEC . . . E 2 8.686 -5.38 -10.199 1 18.49 ? CMA HEC 301 B 1 HETATM 12 C CAA HEC . . . E 2 10.572 -2.892 -10.861 1 21.05 ? CAA HEC 301 B 1 HETATM 13 C CBA HEC . . . E 2 9.838 -2.376 -12.114 1 15.01 ? CBA HEC 301 B 1 HETATM 14 C CGA HEC . . . E 2 10.718 -2.269 -13.353 1 19.27 ? CGA HEC 301 B 1 HETATM 15 O O1A HEC . . . E 2 11.843 -2.766 -13.309 1 19.87 ? O1A HEC 301 B 1 HETATM 16 O O2A HEC . . . E 2 10.343 -1.716 -14.421 1 17.37 ? O2A HEC 301 B 1 HETATM 17 N NB HEC . . . E 2 6.641 -3.228 -5.623 1 14.35 ? NB HEC 301 B 1 HETATM 18 C C1B HEC . . . E 2 6.569 -4.327 -6.377 1 11.21 ? C1B HEC 301 B 1 HETATM 19 C C2B HEC . . . E 2 5.701 -5.269 -5.745 1 12.67 ? C2B HEC 301 B 1 HETATM 20 C C3B HEC . . . E 2 5.228 -4.71 -4.562 1 13.89 ? C3B HEC 301 B 1 HETATM 21 C C4B HEC . . . E 2 5.853 -3.376 -4.551 1 16 ? C4B HEC 301 B 1 HETATM 22 C CMB HEC . . . E 2 5.396 -6.666 -6.236 1 15.94 ? CMB HEC 301 B 1 HETATM 23 C CAB HEC . . . E 2 4.267 -5.304 -3.557 1 14.58 ? CAB HEC 301 B 1 HETATM 24 C CBB HEC . . . E 2 4.885 -6.245 -2.788 1 18.03 ? CBB HEC 301 B 1 HETATM 25 N NC HEC . . . E 2 6.859 -0.624 -4.574 1 12.75 ? NC HEC 301 B 1 HETATM 26 C C1C HEC . . . E 2 6.037 -1.143 -3.625 1 13.82 ? C1C HEC 301 B 1 HETATM 27 C C2C HEC . . . E 2 5.608 -0.073 -2.824 1 15.74 ? C2C HEC 301 B 1 HETATM 28 C C3C HEC . . . E 2 6.221 1.085 -3.25 1 16.36 ? C3C HEC 301 B 1 HETATM 29 C C4C HEC . . . E 2 7.031 0.731 -4.369 1 14.9 ? C4C HEC 301 B 1 HETATM 30 C CMC HEC . . . E 2 4.657 -0.252 -1.664 1 16.21 ? CMC HEC 301 B 1 HETATM 31 C CAC HEC . . . E 2 5.967 2.451 -2.678 1 14.18 ? CAC HEC 301 B 1 HETATM 32 C CBC HEC . . . E 2 6.49 2.766 -1.485 1 16.14 ? CBC HEC 301 B 1 HETATM 33 N ND HEC . . . E 2 8.698 0.041 -6.75 1 14.33 ? ND HEC 301 B 1 HETATM 34 C C1D HEC . . . E 2 8.617 1.239 -6.138 1 14.72 ? C1D HEC 301 B 1 HETATM 35 C C2D HEC . . . E 2 9.594 2.182 -6.654 1 15.48 ? C2D HEC 301 B 1 HETATM 36 C C3D HEC . . . E 2 10.256 1.495 -7.617 1 17.15 ? C3D HEC 301 B 1 HETATM 37 C C4D HEC . . . E 2 9.653 0.159 -7.682 1 15.08 ? C4D HEC 301 B 1 HETATM 38 C CMD HEC . . . E 2 9.824 3.603 -6.221 1 17.13 ? CMD HEC 301 B 1 HETATM 39 C CAD HEC . . . E 2 11.396 2.015 -8.45 1 18.66 ? CAD HEC 301 B 1 HETATM 40 C CBD HEC . . . E 2 12.628 1.312 -7.84 1 27.16 ? CBD HEC 301 B 1 HETATM 41 C CGD HEC . . . E 2 14.045 1.681 -8.172 1 29.52 ? CGD HEC 301 B 1 HETATM 42 O O1D HEC . . . E 2 14.892 1.852 -7.26 1 31.34 ? O1D HEC 301 B 1 HETATM 43 O O2D HEC . . . E 2 14.363 1.81 -9.365 1 26.44 ? O2D HEC 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #