data_4LKI
#
_model_server_result.job_id            jGMDRQ7KJgKHDgMgKNOUbQ 
_model_server_result.datetime_utc      '2024-10-17 12:20:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    4LKI 
#
_exptl.entry_id    4LKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4LKI 
_cell.length_a            116.095 
_cell.length_b            116.095 
_cell.length_c            295.535 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.0475 -100.541219 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 116.095 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 4 1_555 B SG CYS 136 B CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 40 A CYS 42 1_555 A SG CYS 266 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 A SG CYS 52 A CYS 54 1_555 A SG CYS 64 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 A SG CYS 85 A CYS 87 1_555 A SG CYS 127 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 A SG CYS 270 A CYS 272 1_555 A SG CYS 294 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 B SG CYS 143 B CYS 465 1_555 B SG CYS 147 B CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 26 A ASN 28 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 229 A ASN 231 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 A ND2 ASN 229 A ASN 231 1_555 D C2 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? 
covale ? covale4 B ND2 ASN 81 B ASN 403 1_555 E C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4LKI 
_atom_sites.fract_transf_matrix[1][1]    0.008614 
_atom_sites.fract_transf_matrix[1][2]    0.004973 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003384 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 601 601 NAG NAG . 
D 3 NAG A 1 602 602 NAG NAG . 
E 3 NAG B 1 501 603 NAG NAG . 
F 4 HOH A 1 701 1 HOH HOH . 
F 4 HOH A 2 702 5 HOH HOH . 
F 4 HOH A 3 703 9 HOH HOH . 
F 4 HOH A 4 704 12 HOH HOH . 
F 4 HOH A 5 705 13 HOH HOH . 
F 4 HOH A 6 706 14 HOH HOH . 
F 4 HOH A 7 707 15 HOH HOH . 
F 4 HOH A 8 708 18 HOH HOH . 
F 4 HOH A 9 709 20 HOH HOH . 
F 4 HOH A 10 710 22 HOH HOH . 
F 4 HOH A 11 711 23 HOH HOH . 
F 4 HOH A 12 712 25 HOH HOH . 
F 4 HOH A 13 713 26 HOH HOH . 
F 4 HOH A 14 714 27 HOH HOH . 
F 4 HOH A 15 715 28 HOH HOH . 
F 4 HOH A 16 716 30 HOH HOH . 
F 4 HOH A 17 717 31 HOH HOH . 
F 4 HOH A 18 718 32 HOH HOH . 
F 4 HOH A 19 719 34 HOH HOH . 
F 4 HOH A 20 720 35 HOH HOH . 
F 4 HOH A 21 721 37 HOH HOH . 
F 4 HOH A 22 722 38 HOH HOH . 
F 4 HOH A 23 723 39 HOH HOH . 
F 4 HOH A 24 724 41 HOH HOH . 
F 4 HOH A 25 725 45 HOH HOH . 
F 4 HOH A 26 726 46 HOH HOH . 
F 4 HOH A 27 727 47 HOH HOH . 
F 4 HOH A 28 728 49 HOH HOH . 
F 4 HOH A 29 729 50 HOH HOH . 
F 4 HOH A 30 730 52 HOH HOH . 
F 4 HOH A 31 731 53 HOH HOH . 
F 4 HOH A 32 732 54 HOH HOH . 
F 4 HOH A 33 733 57 HOH HOH . 
G 4 HOH B 1 601 2 HOH HOH . 
G 4 HOH B 2 602 4 HOH HOH . 
G 4 HOH B 3 603 6 HOH HOH . 
G 4 HOH B 4 604 7 HOH HOH . 
G 4 HOH B 5 605 17 HOH HOH . 
G 4 HOH B 6 606 19 HOH HOH . 
G 4 HOH B 7 607 29 HOH HOH . 
G 4 HOH B 8 608 40 HOH HOH . 
G 4 HOH B 9 609 42 HOH HOH . 
G 4 HOH B 10 610 43 HOH HOH . 
G 4 HOH B 11 611 44 HOH HOH . 
G 4 HOH B 12 612 51 HOH HOH . 
G 4 HOH B 13 613 55 HOH HOH . 
G 4 HOH B 14 614 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 52.183 -65.511 17.937 1 167.01 ? C1 NAG 602 A 1 
HETATM 2 C C2 NAG . . . D 3 53.619 -65.996 18.171 1 171.53 ? C2 NAG 602 A 1 
HETATM 3 C C3 NAG . . . D 3 53.759 -67.495 17.924 1 170.97 ? C3 NAG 602 A 1 
HETATM 4 C C4 NAG . . . D 3 52.684 -68.25 18.692 1 170.9 ? C4 NAG 602 A 1 
HETATM 5 C C5 NAG . . . D 3 51.303 -67.755 18.279 1 169.54 ? C5 NAG 602 A 1 
HETATM 6 C C6 NAG . . . D 3 50.206 -68.477 19.062 1 168.85 ? C6 NAG 602 A 1 
HETATM 7 C C7 NAG . . . D 3 55.817 -64.975 17.76 1 164.8 ? C7 NAG 602 A 1 
HETATM 8 C C8 NAG . . . D 3 56.203 -63.531 17.904 1 155.91 ? C8 NAG 602 A 1 
HETATM 9 N N2 NAG . . . D 3 54.569 -65.24 17.36 1 167.2 ? N2 NAG 602 A 1 
HETATM 10 O O3 NAG . . . D 3 55.03 -67.928 18.352 1 169.85 ? O3 NAG 602 A 1 
HETATM 11 O O4 NAG . . . D 3 52.782 -69.633 18.437 1 169.79 ? O4 NAG 602 A 1 
HETATM 12 O O5 NAG . . . D 3 51.171 -66.357 18.465 1 171.52 ? O5 NAG 602 A 1 
HETATM 13 O O6 NAG . . . D 3 50.395 -68.312 20.452 1 168.46 ? O6 NAG 602 A 1 
HETATM 14 O O7 NAG . . . D 3 56.644 -65.856 17.998 1 161.67 ? O7 NAG 602 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           14 
#