data_4LKM
#
_model_server_result.job_id            MTyh7UvXwM6RDPcAImWjKg 
_model_server_result.datetime_utc      '2024-11-09 02:41:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lkm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    4LKM 
#
_exptl.entry_id    4LKM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LKM 
_cell.length_a            79.6 
_cell.length_b            82 
_cell.length_c            151.72 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LKM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C11 5PV 1 B 5PV -1 1_555 B N ACA 2 B ACA 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 B C ACA 2 B ACA 0 1_555 B N PRO 3 B PRO 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale3 B C SER 6 B SER 4 1_555 B N TPO 7 B TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale4 B C TPO 7 B TPO 5 1_555 B N MET 8 B MET 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 B C MET 8 B MET 6 1_555 B N NH2 9 B NH2 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 D C ACA 2 D ACA 0 1_555 D N PRO 3 D PRO 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 D C SER 6 D SER 4 1_555 D N TPO 7 D TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 D C TPO 7 D TPO 5 1_555 D N MET 8 D MET 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 D C MET 8 D MET 6 1_555 D N NH2 9 D NH2 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 177 n n 
C1 C2 GOL sing 178 n n 
C1 H11 GOL sing 179 n n 
C1 H12 GOL sing 180 n n 
O1 HO1 GOL sing 181 n n 
C2 O2 GOL sing 182 n n 
C2 C3 GOL sing 183 n n 
C2 H2 GOL sing 184 n n 
O2 HO2 GOL sing 185 n n 
C3 O3 GOL sing 186 n n 
C3 H31 GOL sing 187 n n 
C3 H32 GOL sing 188 n n 
O3 HO3 GOL sing 189 n n 
#
_atom_sites.entry_id                     4LKM 
_atom_sites.fract_transf_matrix[1][1]    0.012563 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006591 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 701 2 SO4 SO4 . 
F 4 GOL B 1 201 3 GOL GOL . 
G 3 SO4 C 1 701 1 SO4 SO4 . 
H 4 GOL D 1 301 4 GOL GOL . 
I 5 HOH A 1 801 179 HOH HOH . 
I 5 HOH A 2 802 186 HOH HOH . 
I 5 HOH A 3 803 162 HOH HOH . 
I 5 HOH A 4 804 117 HOH HOH . 
I 5 HOH A 5 805 9 HOH HOH . 
I 5 HOH A 6 806 14 HOH HOH . 
I 5 HOH A 7 807 108 HOH HOH . 
I 5 HOH A 8 808 166 HOH HOH . 
I 5 HOH A 9 809 203 HOH HOH . 
I 5 HOH A 10 810 183 HOH HOH . 
I 5 HOH A 11 811 130 HOH HOH . 
I 5 HOH A 12 812 82 HOH HOH . 
I 5 HOH A 13 813 69 HOH HOH . 
I 5 HOH A 14 814 160 HOH HOH . 
I 5 HOH A 15 815 133 HOH HOH . 
I 5 HOH A 16 816 175 HOH HOH . 
I 5 HOH A 17 817 31 HOH HOH . 
I 5 HOH A 18 818 152 HOH HOH . 
I 5 HOH A 19 819 32 HOH HOH . 
I 5 HOH A 20 820 23 HOH HOH . 
I 5 HOH A 21 821 148 HOH HOH . 
I 5 HOH A 22 822 134 HOH HOH . 
I 5 HOH A 23 823 22 HOH HOH . 
I 5 HOH A 24 824 39 HOH HOH . 
I 5 HOH A 25 825 13 HOH HOH . 
I 5 HOH A 26 826 12 HOH HOH . 
I 5 HOH A 27 827 72 HOH HOH . 
I 5 HOH A 28 828 204 HOH HOH . 
I 5 HOH A 29 829 195 HOH HOH . 
I 5 HOH A 30 830 33 HOH HOH . 
I 5 HOH A 31 831 93 HOH HOH . 
I 5 HOH A 32 832 99 HOH HOH . 
I 5 HOH A 33 833 191 HOH HOH . 
I 5 HOH A 34 834 35 HOH HOH . 
I 5 HOH A 35 835 16 HOH HOH . 
I 5 HOH A 36 836 173 HOH HOH . 
I 5 HOH A 37 837 111 HOH HOH . 
I 5 HOH A 38 838 126 HOH HOH . 
I 5 HOH A 39 839 146 HOH HOH . 
I 5 HOH A 40 840 53 HOH HOH . 
I 5 HOH A 41 841 113 HOH HOH . 
I 5 HOH A 42 842 86 HOH HOH . 
I 5 HOH A 43 843 66 HOH HOH . 
I 5 HOH A 44 844 57 HOH HOH . 
I 5 HOH A 45 845 169 HOH HOH . 
I 5 HOH A 46 846 90 HOH HOH . 
I 5 HOH A 47 847 135 HOH HOH . 
I 5 HOH A 48 848 194 HOH HOH . 
I 5 HOH A 49 849 67 HOH HOH . 
I 5 HOH A 50 850 36 HOH HOH . 
I 5 HOH A 51 851 4 HOH HOH . 
I 5 HOH A 52 852 120 HOH HOH . 
I 5 HOH A 53 853 145 HOH HOH . 
I 5 HOH A 54 854 46 HOH HOH . 
I 5 HOH A 55 855 7 HOH HOH . 
I 5 HOH A 56 856 91 HOH HOH . 
I 5 HOH A 57 857 37 HOH HOH . 
I 5 HOH A 58 858 87 HOH HOH . 
I 5 HOH A 59 859 102 HOH HOH . 
I 5 HOH A 60 860 64 HOH HOH . 
I 5 HOH A 61 861 85 HOH HOH . 
I 5 HOH A 62 862 81 HOH HOH . 
I 5 HOH A 63 863 70 HOH HOH . 
I 5 HOH A 64 864 176 HOH HOH . 
I 5 HOH A 65 865 25 HOH HOH . 
I 5 HOH A 66 866 51 HOH HOH . 
I 5 HOH A 67 867 137 HOH HOH . 
I 5 HOH A 68 868 63 HOH HOH . 
I 5 HOH A 69 869 26 HOH HOH . 
I 5 HOH A 70 870 201 HOH HOH . 
I 5 HOH A 71 871 50 HOH HOH . 
I 5 HOH A 72 872 74 HOH HOH . 
I 5 HOH A 73 873 114 HOH HOH . 
I 5 HOH A 74 874 193 HOH HOH . 
I 5 HOH A 75 875 143 HOH HOH . 
I 5 HOH A 76 876 172 HOH HOH . 
I 5 HOH A 77 877 125 HOH HOH . 
I 5 HOH A 78 878 112 HOH HOH . 
I 5 HOH A 79 879 89 HOH HOH . 
I 5 HOH A 80 880 127 HOH HOH . 
I 5 HOH A 81 881 48 HOH HOH . 
I 5 HOH A 82 882 56 HOH HOH . 
I 5 HOH A 83 883 168 HOH HOH . 
I 5 HOH A 84 884 131 HOH HOH . 
I 5 HOH A 85 885 140 HOH HOH . 
I 5 HOH A 86 886 59 HOH HOH . 
I 5 HOH A 87 887 158 HOH HOH . 
I 5 HOH A 88 888 62 HOH HOH . 
I 5 HOH A 89 889 196 HOH HOH . 
I 5 HOH A 90 890 184 HOH HOH . 
I 5 HOH A 91 891 129 HOH HOH . 
I 5 HOH A 92 892 174 HOH HOH . 
I 5 HOH A 93 893 83 HOH HOH . 
I 5 HOH A 94 894 128 HOH HOH . 
J 5 HOH B 1 301 154 HOH HOH . 
J 5 HOH B 2 302 3 HOH HOH . 
J 5 HOH B 3 303 17 HOH HOH . 
J 5 HOH B 4 304 78 HOH HOH . 
J 5 HOH B 5 305 18 HOH HOH . 
J 5 HOH B 6 306 8 HOH HOH . 
J 5 HOH B 7 307 151 HOH HOH . 
J 5 HOH B 8 308 42 HOH HOH . 
K 5 HOH C 1 801 185 HOH HOH . 
K 5 HOH C 2 802 161 HOH HOH . 
K 5 HOH C 3 803 110 HOH HOH . 
K 5 HOH C 4 804 47 HOH HOH . 
K 5 HOH C 5 805 121 HOH HOH . 
K 5 HOH C 6 806 75 HOH HOH . 
K 5 HOH C 7 807 149 HOH HOH . 
K 5 HOH C 8 808 76 HOH HOH . 
K 5 HOH C 9 809 5 HOH HOH . 
K 5 HOH C 10 810 103 HOH HOH . 
K 5 HOH C 11 811 118 HOH HOH . 
K 5 HOH C 12 812 34 HOH HOH . 
K 5 HOH C 13 813 122 HOH HOH . 
K 5 HOH C 14 814 123 HOH HOH . 
K 5 HOH C 15 815 21 HOH HOH . 
K 5 HOH C 16 816 142 HOH HOH . 
K 5 HOH C 17 817 77 HOH HOH . 
K 5 HOH C 18 818 27 HOH HOH . 
K 5 HOH C 19 819 71 HOH HOH . 
K 5 HOH C 20 820 104 HOH HOH . 
K 5 HOH C 21 821 155 HOH HOH . 
K 5 HOH C 22 822 167 HOH HOH . 
K 5 HOH C 23 823 52 HOH HOH . 
K 5 HOH C 24 824 198 HOH HOH . 
K 5 HOH C 25 825 189 HOH HOH . 
K 5 HOH C 26 826 101 HOH HOH . 
K 5 HOH C 27 827 28 HOH HOH . 
K 5 HOH C 28 828 94 HOH HOH . 
K 5 HOH C 29 829 138 HOH HOH . 
K 5 HOH C 30 830 20 HOH HOH . 
K 5 HOH C 31 831 58 HOH HOH . 
K 5 HOH C 32 832 98 HOH HOH . 
K 5 HOH C 33 833 202 HOH HOH . 
K 5 HOH C 34 834 153 HOH HOH . 
K 5 HOH C 35 835 19 HOH HOH . 
K 5 HOH C 36 836 68 HOH HOH . 
K 5 HOH C 37 837 49 HOH HOH . 
K 5 HOH C 38 838 29 HOH HOH . 
K 5 HOH C 39 839 10 HOH HOH . 
K 5 HOH C 40 840 61 HOH HOH . 
K 5 HOH C 41 841 60 HOH HOH . 
K 5 HOH C 42 842 100 HOH HOH . 
K 5 HOH C 43 843 181 HOH HOH . 
K 5 HOH C 44 844 79 HOH HOH . 
K 5 HOH C 45 845 55 HOH HOH . 
K 5 HOH C 46 846 88 HOH HOH . 
K 5 HOH C 47 847 11 HOH HOH . 
K 5 HOH C 48 848 6 HOH HOH . 
K 5 HOH C 49 849 44 HOH HOH . 
K 5 HOH C 50 850 136 HOH HOH . 
K 5 HOH C 51 851 188 HOH HOH . 
K 5 HOH C 52 852 73 HOH HOH . 
K 5 HOH C 53 853 95 HOH HOH . 
K 5 HOH C 54 854 124 HOH HOH . 
K 5 HOH C 55 855 97 HOH HOH . 
K 5 HOH C 56 856 182 HOH HOH . 
K 5 HOH C 57 857 119 HOH HOH . 
K 5 HOH C 58 858 45 HOH HOH . 
K 5 HOH C 59 859 150 HOH HOH . 
K 5 HOH C 60 860 43 HOH HOH . 
K 5 HOH C 61 861 40 HOH HOH . 
K 5 HOH C 62 862 164 HOH HOH . 
K 5 HOH C 63 863 165 HOH HOH . 
K 5 HOH C 64 864 144 HOH HOH . 
K 5 HOH C 65 865 24 HOH HOH . 
K 5 HOH C 66 866 92 HOH HOH . 
K 5 HOH C 67 867 163 HOH HOH . 
K 5 HOH C 68 868 41 HOH HOH . 
K 5 HOH C 69 869 96 HOH HOH . 
K 5 HOH C 70 870 116 HOH HOH . 
K 5 HOH C 71 871 139 HOH HOH . 
K 5 HOH C 72 872 132 HOH HOH . 
K 5 HOH C 73 873 187 HOH HOH . 
K 5 HOH C 74 874 157 HOH HOH . 
K 5 HOH C 75 875 54 HOH HOH . 
K 5 HOH C 76 876 180 HOH HOH . 
K 5 HOH C 77 877 170 HOH HOH . 
K 5 HOH C 78 878 200 HOH HOH . 
K 5 HOH C 79 879 84 HOH HOH . 
K 5 HOH C 80 880 177 HOH HOH . 
K 5 HOH C 81 881 105 HOH HOH . 
K 5 HOH C 82 882 190 HOH HOH . 
K 5 HOH C 83 883 178 HOH HOH . 
K 5 HOH C 84 884 115 HOH HOH . 
K 5 HOH C 85 885 141 HOH HOH . 
K 5 HOH C 86 886 192 HOH HOH . 
K 5 HOH C 87 887 197 HOH HOH . 
K 5 HOH C 88 888 156 HOH HOH . 
K 5 HOH C 89 889 171 HOH HOH . 
L 5 HOH D 1 401 1 HOH HOH . 
L 5 HOH D 2 402 15 HOH HOH . 
L 5 HOH D 3 403 30 HOH HOH . 
L 5 HOH D 4 404 38 HOH HOH . 
L 5 HOH D 5 405 199 HOH HOH . 
L 5 HOH D 6 406 2 HOH HOH . 
L 5 HOH D 7 407 159 HOH HOH . 
L 5 HOH D 8 408 65 HOH HOH . 
L 5 HOH D 9 409 147 HOH HOH . 
L 5 HOH D 10 410 80 HOH HOH . 
L 5 HOH D 11 411 205 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 29.366 3.139 24.437 1 46.02 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . F 4 29.134 4.018 25.526 1 46.51 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . F 4 30.754 2.554 24.47 1 47.75 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . F 4 30.7 1.214 24.968 1 47.46 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . F 4 31.376 2.573 23.093 1 48.61 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . F 4 32.724 3.019 23.149 1 50.41 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#