data_4LKO # _model_server_result.job_id zunphHozshseF9EaZ4_K1w _model_server_result.datetime_utc '2024-12-26 18:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 4LKO # _exptl.entry_id 4LKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.268 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(aminomethyl)-4-(2,4-dichlorophenyl)-6-(2-methoxyethyl)-2-methyl-6,7-dihydro-5H-pyrrolo[3,4-b]pyridin-5-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LKO _cell.length_a 65.9 _cell.length_b 68.3 _cell.length_c 421.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? disulf ? disulf4 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? disulf ? disulf5 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? disulf ? disulf6 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? disulf ? disulf7 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? # _chem_comp.formula 'C18 H19 Cl2 N3 O2' _chem_comp.formula_weight 380.268 _chem_comp.id 1WH _chem_comp.mon_nstd_flag . _chem_comp.name 3-(aminomethyl)-4-(2,4-dichlorophenyl)-6-(2-methoxyethyl)-2-methyl-6,7-dihydro-5H-pyrrolo[3,4-b]pyridin-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 O1 1WH sing 1 n n C6 C3A 1WH sing 2 n n C6 N2 1WH sing 3 n n N1 C3A 1WH doub 4 n y N1 C5 1WH sing 5 n y C8 O1 1WH sing 6 n n C8 C7 1WH sing 7 n n C4 C5 1WH sing 8 n n C3A C7A 1WH sing 9 n y C7 N2 1WH sing 10 n n C5 C3 1WH doub 11 n y N2 C 1WH sing 12 n n C7A C 1WH sing 13 n n C7A C2 1WH doub 14 n y C O2 1WH doub 15 n n C3 C2 1WH sing 16 n y C3 C1 1WH sing 17 n n C2 C14 1WH sing 18 n n C1 N 1WH sing 19 n n C14 C19 1WH doub 20 n y C14 C15 1WH sing 21 n y C19 C18 1WH sing 22 n y CL C15 1WH sing 23 n n C15 C16 1WH doub 24 n y C18 C17 1WH doub 25 n y C16 C17 1WH sing 26 n y C17 CL1 1WH sing 27 n n N H1 1WH sing 28 n n N H2 1WH sing 29 n n C1 H4 1WH sing 30 n n C1 H5 1WH sing 31 n n C4 H6 1WH sing 32 n n C4 H7 1WH sing 33 n n C4 H8 1WH sing 34 n n C6 H9 1WH sing 35 n n C6 H10 1WH sing 36 n n C7 H11 1WH sing 37 n n C7 H12 1WH sing 38 n n C8 H13 1WH sing 39 n n C8 H14 1WH sing 40 n n C10 H15 1WH sing 41 n n C10 H16 1WH sing 42 n n C10 H17 1WH sing 43 n n C16 H18 1WH sing 44 n n C18 H19 1WH sing 45 n n C19 H20 1WH sing 46 n n # _atom_sites.entry_id 4LKO _atom_sites.fract_transf_matrix[1][1] 0.015175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1WH A 1 801 1 1WH INH . D 2 1WH B 1 801 2 1WH INH . E 3 HOH A 1 901 2 HOH HOH . E 3 HOH A 2 902 3 HOH HOH . E 3 HOH A 3 903 4 HOH HOH . E 3 HOH A 4 904 7 HOH HOH . E 3 HOH A 5 905 8 HOH HOH . E 3 HOH A 6 906 9 HOH HOH . E 3 HOH A 7 907 11 HOH HOH . E 3 HOH A 8 908 12 HOH HOH . E 3 HOH A 9 909 13 HOH HOH . E 3 HOH A 10 910 16 HOH HOH . E 3 HOH A 11 911 17 HOH HOH . E 3 HOH A 12 912 18 HOH HOH . E 3 HOH A 13 913 19 HOH HOH . E 3 HOH A 14 914 20 HOH HOH . E 3 HOH A 15 915 21 HOH HOH . E 3 HOH A 16 916 24 HOH HOH . E 3 HOH A 17 917 25 HOH HOH . E 3 HOH A 18 918 28 HOH HOH . E 3 HOH A 19 919 33 HOH HOH . E 3 HOH A 20 920 34 HOH HOH . E 3 HOH A 21 921 35 HOH HOH . E 3 HOH A 22 922 36 HOH HOH . E 3 HOH A 23 923 39 HOH HOH . E 3 HOH A 24 924 40 HOH HOH . E 3 HOH A 25 925 44 HOH HOH . E 3 HOH A 26 926 46 HOH HOH . E 3 HOH A 27 927 47 HOH HOH . E 3 HOH A 28 928 50 HOH HOH . E 3 HOH A 29 929 51 HOH HOH . E 3 HOH A 30 930 52 HOH HOH . E 3 HOH A 31 931 54 HOH HOH . E 3 HOH A 32 932 56 HOH HOH . E 3 HOH A 33 933 57 HOH HOH . E 3 HOH A 34 934 58 HOH HOH . E 3 HOH A 35 935 59 HOH HOH . E 3 HOH A 36 936 61 HOH HOH . E 3 HOH A 37 937 62 HOH HOH . E 3 HOH A 38 938 63 HOH HOH . E 3 HOH A 39 939 64 HOH HOH . E 3 HOH A 40 940 66 HOH HOH . E 3 HOH A 41 941 67 HOH HOH . E 3 HOH A 42 942 68 HOH HOH . E 3 HOH A 43 943 69 HOH HOH . E 3 HOH A 44 944 71 HOH HOH . E 3 HOH A 45 945 72 HOH HOH . E 3 HOH A 46 946 73 HOH HOH . E 3 HOH A 47 947 74 HOH HOH . E 3 HOH A 48 948 76 HOH HOH . E 3 HOH A 49 949 77 HOH HOH . E 3 HOH A 50 950 78 HOH HOH . E 3 HOH A 51 951 79 HOH HOH . E 3 HOH A 52 952 80 HOH HOH . E 3 HOH A 53 953 82 HOH HOH . E 3 HOH A 54 954 83 HOH HOH . E 3 HOH A 55 955 84 HOH HOH . E 3 HOH A 56 956 85 HOH HOH . E 3 HOH A 57 957 86 HOH HOH . E 3 HOH A 58 958 87 HOH HOH . E 3 HOH A 59 959 92 HOH HOH . E 3 HOH A 60 960 93 HOH HOH . E 3 HOH A 61 961 95 HOH HOH . E 3 HOH A 62 962 96 HOH HOH . E 3 HOH A 63 963 100 HOH HOH . F 3 HOH B 1 901 1 HOH HOH . F 3 HOH B 2 902 5 HOH HOH . F 3 HOH B 3 903 6 HOH HOH . F 3 HOH B 4 904 10 HOH HOH . F 3 HOH B 5 905 14 HOH HOH . F 3 HOH B 6 906 15 HOH HOH . F 3 HOH B 7 907 22 HOH HOH . F 3 HOH B 8 908 23 HOH HOH . F 3 HOH B 9 909 26 HOH HOH . F 3 HOH B 10 910 27 HOH HOH . F 3 HOH B 11 911 29 HOH HOH . F 3 HOH B 12 912 30 HOH HOH . F 3 HOH B 13 913 31 HOH HOH . F 3 HOH B 14 914 32 HOH HOH . F 3 HOH B 15 915 37 HOH HOH . F 3 HOH B 16 916 38 HOH HOH . F 3 HOH B 17 917 41 HOH HOH . F 3 HOH B 18 918 42 HOH HOH . F 3 HOH B 19 919 43 HOH HOH . F 3 HOH B 20 920 45 HOH HOH . F 3 HOH B 21 921 48 HOH HOH . F 3 HOH B 22 922 49 HOH HOH . F 3 HOH B 23 923 53 HOH HOH . F 3 HOH B 24 924 55 HOH HOH . F 3 HOH B 25 925 60 HOH HOH . F 3 HOH B 26 926 65 HOH HOH . F 3 HOH B 27 927 70 HOH HOH . F 3 HOH B 28 928 75 HOH HOH . F 3 HOH B 29 929 81 HOH HOH . F 3 HOH B 30 930 88 HOH HOH . F 3 HOH B 31 931 89 HOH HOH . F 3 HOH B 32 932 90 HOH HOH . F 3 HOH B 33 933 94 HOH HOH . F 3 HOH B 34 934 101 HOH HOH . F 3 HOH B 35 935 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 1WH . . . D 2 67.734 68.329 70.742 1 59.45 ? C 1WH 801 B 1 HETATM 2 C C7A 1WH . . . D 2 67.058 69.612 71.048 1 58.93 ? C7A 1WH 801 B 1 HETATM 3 N N 1WH . . . D 2 64.368 72.808 69.349 1 57.41 ? N 1WH 801 B 1 HETATM 4 C C1 1WH . . . D 2 65.575 73.056 70.134 1 55.83 ? C1 1WH 801 B 1 HETATM 5 C C2 1WH . . . D 2 66.78 70.743 70.238 1 57.11 ? C2 1WH 801 B 1 HETATM 6 C C3 1WH . . . D 2 65.934 71.743 70.828 1 57.67 ? C3 1WH 801 B 1 HETATM 7 C C4 1WH . . . D 2 64.452 72.526 72.667 1 58.9 ? C4 1WH 801 B 1 HETATM 8 C C5 1WH . . . D 2 65.342 71.494 72.105 1 58.82 ? C5 1WH 801 B 1 HETATM 9 N N1 1WH . . . D 2 65.555 70.352 72.832 1 58.78 ? N1 1WH 801 B 1 HETATM 10 C C3A 1WH . . . D 2 66.447 69.469 72.307 1 59.3 ? C3A 1WH 801 B 1 HETATM 11 C C6 1WH . . . D 2 66.974 68.198 72.961 1 59.24 ? C6 1WH 801 B 1 HETATM 12 N N2 1WH . . . D 2 67.809 67.646 71.891 1 61.57 ? N2 1WH 801 B 1 HETATM 13 C C7 1WH . . . D 2 68.556 66.407 72.019 1 62.78 ? C7 1WH 801 B 1 HETATM 14 C C8 1WH . . . D 2 69.879 66.857 72.595 1 67.7 ? C8 1WH 801 B 1 HETATM 15 O O1 1WH . . . D 2 70.761 65.751 72.494 1 73.24 ? O1 1WH 801 B 1 HETATM 16 C C10 1WH . . . D 2 71.428 65.078 73.603 1 74.18 ? C10 1WH 801 B 1 HETATM 17 C C14 1WH . . . D 2 67.182 70.795 68.782 1 56.71 ? C14 1WH 801 B 1 HETATM 18 C C15 1WH . . . D 2 66.398 70.231 67.712 1 57.05 ? C15 1WH 801 B 1 HETATM 19 CL CL 1WH . . . D 2 64.904 69.555 68.058 1 65.38 ? CL 1WH 801 B 1 HETATM 20 C C16 1WH . . . D 2 66.679 70.334 66.321 1 56.67 ? C16 1WH 801 B 1 HETATM 21 C C17 1WH . . . D 2 67.85 71.092 66.049 1 57.91 ? C17 1WH 801 B 1 HETATM 22 CL CL1 1WH . . . D 2 68.204 71.246 64.404 1 58.17 ? CL1 1WH 801 B 1 HETATM 23 C C18 1WH . . . D 2 68.674 71.682 67.089 1 55.38 ? C18 1WH 801 B 1 HETATM 24 C C19 1WH . . . D 2 68.345 71.53 68.462 1 55.23 ? C19 1WH 801 B 1 HETATM 25 O O2 1WH . . . D 2 68.15 67.863 69.684 1 58.52 ? O2 1WH 801 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #