data_4LKV
#
_model_server_result.job_id            5khZO6qo8T4GMkvEmm5s_g 
_model_server_result.datetime_utc      '2024-11-25 11:29:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lkv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    4LKV 
#
_exptl.entry_id    4LKV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              711.861 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-4-O-phosphono-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LKV 
_cell.length_a            136.632 
_cell.length_b            140.691 
_cell.length_c            173.846 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LKV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G 1 1 
B 2 1 
C,H,I 3 1 
D 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 F C1 LP4 . A LP4 402 1_555 G O6 LP5 . A LP5 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale2 H C1 LP4 . C LP4 401 1_555 I O6 LP5 . C LP5 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? 
#
_chem_comp.formula           'C34 H66 N O12 P' 
_chem_comp.formula_weight    711.861 
_chem_comp.id                LP4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-4-O-phosphono-beta-D-glucopyranose 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 LP4 sing 225 n n 
C1 O5 LP4 sing 226 n n 
C1 O1 LP4 sing 227 n n 
C1 H1 LP4 sing 228 n n 
O1 HO1 LP4 sing 229 n n 
C3 C2 LP4 sing 230 n n 
N2 C2 LP4 sing 231 n n 
C2 H2 LP4 sing 232 n n 
N2 C7 LP4 sing 233 n n 
N2 HN2 LP4 sing 234 n n 
O3 C3 LP4 sing 235 n n 
C3 C4 LP4 sing 236 n n 
C3 H3 LP4 sing 237 n n 
C28 O3 LP4 sing 238 n n 
O4 C4 LP4 sing 239 n n 
C4 C5 LP4 sing 240 n n 
C4 H4 LP4 sing 241 n n 
P45 O4 LP4 sing 242 n n 
C5 C6 LP4 sing 243 n n 
C5 O5 LP4 sing 244 n n 
C5 H5 LP4 sing 245 n n 
C6 O6 LP4 sing 246 n n 
C6 H6 LP4 sing 247 n n 
C6 H6A LP4 sing 248 n n 
O6 HO6 LP4 sing 249 n n 
C8 C7 LP4 sing 250 n n 
C7 O7 LP4 doub 251 n n 
C8 C16 LP4 sing 252 n n 
C8 H8 LP4 sing 253 n n 
C8 H8A LP4 sing 254 n n 
C17 C16 LP4 sing 255 n n 
C16 O44 LP4 sing 256 n n 
C16 H16 LP4 sing 257 n n 
C17 C18 LP4 sing 258 n n 
C17 H17 LP4 sing 259 n n 
C17 H17A LP4 sing 260 n n 
C19 C18 LP4 sing 261 n n 
C18 H18 LP4 sing 262 n n 
C18 H18A LP4 sing 263 n n 
C19 C20 LP4 sing 264 n n 
C19 H19 LP4 sing 265 n n 
C19 H19A LP4 sing 266 n n 
C20 C21 LP4 sing 267 n n 
C20 H20 LP4 sing 268 n n 
C20 H20A LP4 sing 269 n n 
C22 C21 LP4 sing 270 n n 
C21 H21 LP4 sing 271 n n 
C21 H21A LP4 sing 272 n n 
C23 C22 LP4 sing 273 n n 
C22 H22 LP4 sing 274 n n 
C22 H22A LP4 sing 275 n n 
C24 C23 LP4 sing 276 n n 
C23 H23 LP4 sing 277 n n 
C23 H23A LP4 sing 278 n n 
C25 C24 LP4 sing 279 n n 
C24 H24 LP4 sing 280 n n 
C24 H24A LP4 sing 281 n n 
C26 C25 LP4 sing 282 n n 
C25 H25 LP4 sing 283 n n 
C25 H25A LP4 sing 284 n n 
C27 C26 LP4 sing 285 n n 
C26 H26 LP4 sing 286 n n 
C26 H26A LP4 sing 287 n n 
C27 H27 LP4 sing 288 n n 
C27 H27A LP4 sing 289 n n 
C27 H27B LP4 sing 290 n n 
C29 C28 LP4 sing 291 n n 
O42 C28 LP4 doub 292 n n 
C30 C29 LP4 sing 293 n n 
C29 H29 LP4 sing 294 n n 
C29 H29A LP4 sing 295 n n 
C31 C30 LP4 sing 296 n n 
O43 C30 LP4 sing 297 n n 
C30 H30 LP4 sing 298 n n 
C32 C31 LP4 sing 299 n n 
C31 H31 LP4 sing 300 n n 
C31 H31A LP4 sing 301 n n 
C33 C32 LP4 sing 302 n n 
C32 H32 LP4 sing 303 n n 
C32 H32A LP4 sing 304 n n 
C33 C34 LP4 sing 305 n n 
C33 H33 LP4 sing 306 n n 
C33 H33A LP4 sing 307 n n 
C34 C35 LP4 sing 308 n n 
C34 H34 LP4 sing 309 n n 
C34 H34A LP4 sing 310 n n 
C36 C35 LP4 sing 311 n n 
C35 H35 LP4 sing 312 n n 
C35 H35A LP4 sing 313 n n 
C36 C37 LP4 sing 314 n n 
C36 H36 LP4 sing 315 n n 
C36 H36A LP4 sing 316 n n 
C37 C38 LP4 sing 317 n n 
C37 H37 LP4 sing 318 n n 
C37 H37A LP4 sing 319 n n 
C38 C39 LP4 sing 320 n n 
C38 H38 LP4 sing 321 n n 
C38 H38A LP4 sing 322 n n 
C39 C40 LP4 sing 323 n n 
C39 H39 LP4 sing 324 n n 
C39 H39A LP4 sing 325 n n 
C40 C41 LP4 sing 326 n n 
C40 H40 LP4 sing 327 n n 
C40 H40A LP4 sing 328 n n 
C41 H41 LP4 sing 329 n n 
C41 H41A LP4 sing 330 n n 
C41 H41B LP4 sing 331 n n 
O43 HO43 LP4 sing 332 n n 
O44 HO44 LP4 sing 333 n n 
O48 P45 LP4 doub 334 n n 
O47 P45 LP4 sing 335 n n 
P45 O46 LP4 sing 336 n n 
O46 HO46 LP4 sing 337 n n 
O47 HO47 LP4 sing 338 n n 
#
_atom_sites.entry_id                     4LKV 
_atom_sites.fract_transf_matrix[1][1]    0.007319 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007108 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005752 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EPE A 1 401 403 EPE EPE . 
F 3 LP4 A 1 402 401 LP4 LP4 . 
G 4 LP5 A 1 403 402 LP5 LP5 . 
H 3 LP4 C 1 401 401 LP4 LP4 . 
I 4 LP5 C 1 402 402 LP5 LP5 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LP4 . . . H 3 -16.784 21.56 -17.578 1 89.63 ? C1 LP4 401 C 1 
HETATM 2 C C2 LP4 . . . H 3 -15.811 21.518 -16.396 1 90.24 ? C2 LP4 401 C 1 
HETATM 3 N N2 LP4 . . . H 3 -16.104 22.611 -15.479 1 83.49 ? N2 LP4 401 C 1 
HETATM 4 C C3 LP4 . . . H 3 -14.338 21.597 -16.791 1 94.98 ? C3 LP4 401 C 1 
HETATM 5 O O3 LP4 . . . H 3 -13.522 21.22 -15.681 1 104.66 ? O3 LP4 401 C 1 
HETATM 6 C C4 LP4 . . . H 3 -14.025 20.669 -17.955 1 90.24 ? C4 LP4 401 C 1 
HETATM 7 O O4 LP4 . . . H 3 -12.676 20.882 -18.391 1 95.21 ? O4 LP4 401 C 1 
HETATM 8 C C5 LP4 . . . H 3 -15 20.885 -19.109 1 85.55 ? C5 LP4 401 C 1 
HETATM 9 O O5 LP4 . . . H 3 -16.364 20.77 -18.697 1 86.33 ? O5 LP4 401 C 1 
HETATM 10 C C6 LP4 . . . H 3 -14.747 19.82 -20.17 1 81.68 ? C6 LP4 401 C 1 
HETATM 11 O O6 LP4 . . . H 3 -15.974 19.45 -20.809 1 75.9 ? O6 LP4 401 C 1 
HETATM 12 C C7 LP4 . . . H 3 -16.996 22.517 -14.492 1 72.9 ? C7 LP4 401 C 1 
HETATM 13 O O7 LP4 . . . H 3 -17.179 21.495 -13.848 1 60.17 ? O7 LP4 401 C 1 
HETATM 14 C C8 LP4 . . . H 3 -17.796 23.764 -14.19 1 75.93 ? C8 LP4 401 C 1 
HETATM 15 C C16 LP4 . . . H 3 -18.743 23.512 -13.02 1 78.61 ? C16 LP4 401 C 1 
HETATM 16 C C17 LP4 . . . H 3 -19.718 24.678 -12.891 1 80.96 ? C17 LP4 401 C 1 
HETATM 17 C C28 LP4 . . . H 3 -12.4 22.125 -15.485 1 112.69 ? C28 LP4 401 C 1 
HETATM 18 C C29 LP4 . . . H 3 -10.979 21.619 -15.586 1 111.76 ? C29 LP4 401 C 1 
HETATM 19 O O42 LP4 . . . H 3 -12.608 23.297 -15.223 1 117.12 ? O42 LP4 401 C 1 
HETATM 20 O O44 LP4 . . . H 3 -19.474 22.302 -13.251 1 75.83 ? O44 LP4 401 C 1 
HETATM 21 P P45 LP4 . . . H 3 -11.56 19.71 -18.466 1 114.79 ? P45 LP4 401 C 1 
HETATM 22 O O46 LP4 . . . H 3 -11.97 18.712 -17.413 1 109.95 ? O46 LP4 401 C 1 
HETATM 23 O O47 LP4 . . . H 3 -11.666 19.198 -19.884 1 116.97 ? O47 LP4 401 C 1 
HETATM 24 O O48 LP4 . . . H 3 -10.25 20.405 -18.188 1 117.85 1 O48 LP4 401 C 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#