data_4LKV # _model_server_result.job_id o0xRLpmMXzeU-3YgiuABLg _model_server_result.datetime_utc '2024-10-23 22:36:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 4LKV # _exptl.entry_id 4LKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 711.861 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LKV _cell.length_a 136.632 _cell.length_b 140.691 _cell.length_c 173.846 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B 2 1 C,H,I 3 1 D 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F C1 LP4 . A LP4 402 1_555 G O6 LP5 . A LP5 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 H C1 LP4 . C LP4 401 1_555 I O6 LP5 . C LP5 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? # _chem_comp.formula 'C34 H66 N O12 P' _chem_comp.formula_weight 711.861 _chem_comp.id LP5 _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O48 P45 LP5 sing 339 n n O48 HO48 LP5 sing 340 n n P45 O1 LP5 sing 341 n n P45 O47 LP5 doub 342 n n P45 O46 LP5 sing 343 n n O46 HO46 LP5 sing 344 n n O1 C1 LP5 sing 345 n n C1 C2 LP5 sing 346 n n C1 O5 LP5 sing 347 n n C1 H1 LP5 sing 348 n n C2 C3 LP5 sing 349 n n C2 N2 LP5 sing 350 n n C2 H2 LP5 sing 351 n n N2 C7 LP5 sing 352 n n N2 HN2 LP5 sing 353 n n C7 O7 LP5 doub 354 n n C7 C8 LP5 sing 355 n n C8 C16 LP5 sing 356 n n C8 H81 LP5 sing 357 n n C8 H82 LP5 sing 358 n n C16 C17 LP5 sing 359 n n C16 O44 LP5 sing 360 n n C16 H16 LP5 sing 361 n n O44 HO44 LP5 sing 362 n n C17 C18 LP5 sing 363 n n C17 H171 LP5 sing 364 n n C17 H172 LP5 sing 365 n n C18 C19 LP5 sing 366 n n C18 H181 LP5 sing 367 n n C18 H182 LP5 sing 368 n n C19 C20 LP5 sing 369 n n C19 H191 LP5 sing 370 n n C19 H192 LP5 sing 371 n n C20 C21 LP5 sing 372 n n C20 H201 LP5 sing 373 n n C20 H202 LP5 sing 374 n n C21 C22 LP5 sing 375 n n C21 H211 LP5 sing 376 n n C21 H212 LP5 sing 377 n n C22 C23 LP5 sing 378 n n C22 H221 LP5 sing 379 n n C22 H222 LP5 sing 380 n n C23 C24 LP5 sing 381 n n C23 H231 LP5 sing 382 n n C23 H232 LP5 sing 383 n n C24 C25 LP5 sing 384 n n C24 H241 LP5 sing 385 n n C24 H242 LP5 sing 386 n n C25 C26 LP5 sing 387 n n C25 H251 LP5 sing 388 n n C25 H252 LP5 sing 389 n n C26 C27 LP5 sing 390 n n C26 H261 LP5 sing 391 n n C26 H262 LP5 sing 392 n n C27 H271 LP5 sing 393 n n C27 H272 LP5 sing 394 n n C27 H273 LP5 sing 395 n n C3 O3 LP5 sing 396 n n C3 C4 LP5 sing 397 n n C3 H3 LP5 sing 398 n n C4 O4 LP5 sing 399 n n C4 C5 LP5 sing 400 n n C4 H4 LP5 sing 401 n n C5 C6 LP5 sing 402 n n C5 O5 LP5 sing 403 n n C5 H5 LP5 sing 404 n n C6 O6 LP5 sing 405 n n C6 H61 LP5 sing 406 n n C6 H62 LP5 sing 407 n n O6 HO6 LP5 sing 408 n n O4 HO4 LP5 sing 409 n n O3 C28 LP5 sing 410 n n C28 C29 LP5 sing 411 n n C28 O42 LP5 doub 412 n n C29 C30 LP5 sing 413 n n C29 H291 LP5 sing 414 n n C29 H292 LP5 sing 415 n n C30 C31 LP5 sing 416 n n C30 O43 LP5 sing 417 n n C30 H30 LP5 sing 418 n n O43 HO43 LP5 sing 419 n n C31 C32 LP5 sing 420 n n C31 H311 LP5 sing 421 n n C31 H312 LP5 sing 422 n n C32 C33 LP5 sing 423 n n C32 H321 LP5 sing 424 n n C32 H322 LP5 sing 425 n n C33 C34 LP5 sing 426 n n C33 H331 LP5 sing 427 n n C33 H332 LP5 sing 428 n n C34 C35 LP5 sing 429 n n C34 H341 LP5 sing 430 n n C34 H342 LP5 sing 431 n n C35 C36 LP5 sing 432 n n C35 H351 LP5 sing 433 n n C35 H352 LP5 sing 434 n n C36 C37 LP5 sing 435 n n C36 H361 LP5 sing 436 n n C36 H362 LP5 sing 437 n n C37 C38 LP5 sing 438 n n C37 H371 LP5 sing 439 n n C37 H372 LP5 sing 440 n n C38 C39 LP5 sing 441 n n C38 H381 LP5 sing 442 n n C38 H382 LP5 sing 443 n n C39 C40 LP5 sing 444 n n C39 H391 LP5 sing 445 n n C39 H392 LP5 sing 446 n n C40 C41 LP5 sing 447 n n C40 H401 LP5 sing 448 n n C40 H402 LP5 sing 449 n n C41 H411 LP5 sing 450 n n C41 H412 LP5 sing 451 n n C41 H413 LP5 sing 452 n n # _atom_sites.entry_id 4LKV _atom_sites.fract_transf_matrix[1][1] 0.007319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EPE A 1 401 403 EPE EPE . F 3 LP4 A 1 402 401 LP4 LP4 . G 4 LP5 A 1 403 402 LP5 LP5 . H 3 LP4 C 1 401 401 LP4 LP4 . I 4 LP5 C 1 402 402 LP5 LP5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O48 LP5 . . . G 4 -59.363 -9.252 -27.392 1 96.26 ? O48 LP5 403 A 1 HETATM 2 P P45 LP5 . . . G 4 -59.971 -10.543 -26.899 1 96.62 ? P45 LP5 403 A 1 HETATM 3 O O46 LP5 . . . G 4 -61.129 -10.365 -25.946 1 81.57 ? O46 LP5 403 A 1 HETATM 4 O O47 LP5 . . . G 4 -58.959 -11.57 -26.453 1 103.52 1 O47 LP5 403 A 1 HETATM 5 O O1 LP5 . . . G 4 -60.648 -11.191 -28.213 1 42.71 ? O1 LP5 403 A 1 HETATM 6 C C1 LP5 . . . G 4 -60.079 -12.316 -28.89 1 43.06 ? C1 LP5 403 A 1 HETATM 7 C C2 LP5 . . . G 4 -60.687 -12.481 -30.287 1 56.92 ? C2 LP5 403 A 1 HETATM 8 N N2 LP5 . . . G 4 -60.513 -11.26 -31.056 1 74.43 ? N2 LP5 403 A 1 HETATM 9 C C7 LP5 . . . G 4 -60.154 -11.273 -32.339 1 82.34 ? C7 LP5 403 A 1 HETATM 10 C C8 LP5 . . . G 4 -60.326 -9.982 -33.104 1 81.28 ? C8 LP5 403 A 1 HETATM 11 O O7 LP5 . . . G 4 -59.707 -12.261 -32.897 1 84.97 ? O7 LP5 403 A 1 HETATM 12 C C3 LP5 . . . G 4 -62.162 -12.892 -30.238 1 53.81 ? C3 LP5 403 A 1 HETATM 13 C C4 LP5 . . . G 4 -62.568 -13.57 -28.929 1 38.43 ? C4 LP5 403 A 1 HETATM 14 C C5 LP5 . . . G 4 -61.408 -14.302 -28.248 1 30.37 ? C5 LP5 403 A 1 HETATM 15 O O5 LP5 . . . G 4 -60.25 -13.472 -28.055 1 33.1 ? O5 LP5 403 A 1 HETATM 16 C C6 LP5 . . . G 4 -61.044 -15.61 -28.948 1 20.91 ? C6 LP5 403 A 1 HETATM 17 O O6 LP5 . . . G 4 -60.019 -16.274 -28.198 1 101.03 ? O6 LP5 403 A 1 HETATM 18 O O4 LP5 . . . G 4 -63.13 -12.611 -28.021 1 37.01 ? O4 LP5 403 A 1 HETATM 19 O O3 LP5 . . . G 4 -62.465 -13.783 -31.314 1 70.44 ? O3 LP5 403 A 1 HETATM 20 C C28 LP5 . . . G 4 -62.929 -13.09 -32.507 1 80.2 ? C28 LP5 403 A 1 HETATM 21 O O42 LP5 . . . G 4 -63.243 -11.913 -32.429 1 84.13 ? O42 LP5 403 A 1 HETATM 22 C C29 LP5 . . . G 4 -63.037 -13.826 -33.821 1 80.75 ? C29 LP5 403 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 45 _model_server_stats.element_count 22 #