data_4LL5 # _model_server_result.job_id D1XFaJqB-_pa7w8dM65lBQ _model_server_result.datetime_utc '2024-12-01 23:33:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ll5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4LL5 # _exptl.entry_id 4LL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LL5 _cell.length_a 98.65 _cell.length_b 98.65 _cell.length_c 80.27 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 143 A ASP 170 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc2 A OH TYR 180 A TYR 207 1_555 G CA CA . A CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc3 G CA CA . A CA 406 1_555 H O HOH . A HOH 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 G CA CA . A CA 406 1_555 H O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4LL5 _atom_sites.fract_transf_matrix[1][1] 0.010137 _atom_sites.fract_transf_matrix[1][2] 0.005853 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SK8 A 1 401 1 SK8 SKF . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 1 GOL GOL . E 3 GOL A 1 404 1 GOL GOL . F 3 GOL A 1 405 1 GOL GOL . G 4 CA A 1 406 1 CA CA . H 5 HOH A 1 501 1 HOH HOH . H 5 HOH A 2 502 2 HOH HOH . H 5 HOH A 3 503 3 HOH HOH . H 5 HOH A 4 504 4 HOH HOH . H 5 HOH A 5 505 5 HOH HOH . H 5 HOH A 6 506 6 HOH HOH . H 5 HOH A 7 507 7 HOH HOH . H 5 HOH A 8 508 8 HOH HOH . H 5 HOH A 9 509 9 HOH HOH . H 5 HOH A 10 510 10 HOH HOH . H 5 HOH A 11 511 11 HOH HOH . H 5 HOH A 12 512 12 HOH HOH . H 5 HOH A 13 513 13 HOH HOH . H 5 HOH A 14 514 14 HOH HOH . H 5 HOH A 15 515 15 HOH HOH . H 5 HOH A 16 516 16 HOH HOH . H 5 HOH A 17 517 17 HOH HOH . H 5 HOH A 18 518 18 HOH HOH . H 5 HOH A 19 519 19 HOH HOH . H 5 HOH A 20 520 20 HOH HOH . H 5 HOH A 21 521 21 HOH HOH . H 5 HOH A 22 522 22 HOH HOH . H 5 HOH A 23 523 23 HOH HOH . H 5 HOH A 24 524 24 HOH HOH . H 5 HOH A 25 525 25 HOH HOH . H 5 HOH A 26 526 26 HOH HOH . H 5 HOH A 27 527 27 HOH HOH . H 5 HOH A 28 528 28 HOH HOH . H 5 HOH A 29 529 30 HOH HOH . H 5 HOH A 30 530 31 HOH HOH . H 5 HOH A 31 531 32 HOH HOH . H 5 HOH A 32 532 33 HOH HOH . H 5 HOH A 33 533 34 HOH HOH . H 5 HOH A 34 534 35 HOH HOH . H 5 HOH A 35 535 36 HOH HOH . H 5 HOH A 36 536 37 HOH HOH . H 5 HOH A 37 537 38 HOH HOH . H 5 HOH A 38 538 39 HOH HOH . H 5 HOH A 39 539 40 HOH HOH . H 5 HOH A 40 540 41 HOH HOH . H 5 HOH A 41 541 42 HOH HOH . H 5 HOH A 42 542 43 HOH HOH . H 5 HOH A 43 543 44 HOH HOH . H 5 HOH A 44 544 45 HOH HOH . H 5 HOH A 45 545 46 HOH HOH . H 5 HOH A 46 546 47 HOH HOH . H 5 HOH A 47 547 48 HOH HOH . H 5 HOH A 48 548 49 HOH HOH . H 5 HOH A 49 549 50 HOH HOH . H 5 HOH A 50 550 51 HOH HOH . H 5 HOH A 51 551 52 HOH HOH . H 5 HOH A 52 552 53 HOH HOH . H 5 HOH A 53 553 54 HOH HOH . H 5 HOH A 54 554 56 HOH HOH . H 5 HOH A 55 555 57 HOH HOH . H 5 HOH A 56 556 58 HOH HOH . H 5 HOH A 57 557 60 HOH HOH . H 5 HOH A 58 558 61 HOH HOH . H 5 HOH A 59 559 62 HOH HOH . H 5 HOH A 60 560 63 HOH HOH . H 5 HOH A 61 561 64 HOH HOH . H 5 HOH A 62 562 65 HOH HOH . H 5 HOH A 63 563 66 HOH HOH . H 5 HOH A 64 564 67 HOH HOH . H 5 HOH A 65 565 68 HOH HOH . H 5 HOH A 66 566 69 HOH HOH . H 5 HOH A 67 567 71 HOH HOH . H 5 HOH A 68 568 72 HOH HOH . H 5 HOH A 69 569 73 HOH HOH . H 5 HOH A 70 570 74 HOH HOH . H 5 HOH A 71 571 75 HOH HOH . H 5 HOH A 72 572 76 HOH HOH . H 5 HOH A 73 573 77 HOH HOH . H 5 HOH A 74 574 79 HOH HOH . H 5 HOH A 75 575 80 HOH HOH . H 5 HOH A 76 576 81 HOH HOH . H 5 HOH A 77 577 82 HOH HOH . H 5 HOH A 78 578 83 HOH HOH . H 5 HOH A 79 579 84 HOH HOH . H 5 HOH A 80 580 85 HOH HOH . H 5 HOH A 81 581 86 HOH HOH . H 5 HOH A 82 582 87 HOH HOH . H 5 HOH A 83 583 88 HOH HOH . H 5 HOH A 84 584 89 HOH HOH . H 5 HOH A 85 585 90 HOH HOH . H 5 HOH A 86 586 91 HOH HOH . H 5 HOH A 87 587 92 HOH HOH . H 5 HOH A 88 588 93 HOH HOH . H 5 HOH A 89 589 94 HOH HOH . H 5 HOH A 90 590 95 HOH HOH . H 5 HOH A 91 591 96 HOH HOH . H 5 HOH A 92 592 97 HOH HOH . H 5 HOH A 93 593 98 HOH HOH . H 5 HOH A 94 594 99 HOH HOH . H 5 HOH A 95 595 100 HOH HOH . H 5 HOH A 96 596 101 HOH HOH . H 5 HOH A 97 597 102 HOH HOH . H 5 HOH A 98 598 103 HOH HOH . H 5 HOH A 99 599 104 HOH HOH . H 5 HOH A 100 600 105 HOH HOH . H 5 HOH A 101 601 106 HOH HOH . H 5 HOH A 102 602 107 HOH HOH . H 5 HOH A 103 603 108 HOH HOH . H 5 HOH A 104 604 109 HOH HOH . H 5 HOH A 105 605 110 HOH HOH . H 5 HOH A 106 606 111 HOH HOH . H 5 HOH A 107 607 112 HOH HOH . H 5 HOH A 108 608 113 HOH HOH . H 5 HOH A 109 609 114 HOH HOH . H 5 HOH A 110 610 115 HOH HOH . H 5 HOH A 111 611 116 HOH HOH . H 5 HOH A 112 612 117 HOH HOH . H 5 HOH A 113 613 118 HOH HOH . H 5 HOH A 114 614 119 HOH HOH . H 5 HOH A 115 615 120 HOH HOH . H 5 HOH A 116 616 121 HOH HOH . H 5 HOH A 117 617 123 HOH HOH . H 5 HOH A 118 618 124 HOH HOH . H 5 HOH A 119 619 125 HOH HOH . H 5 HOH A 120 620 126 HOH HOH . H 5 HOH A 121 621 127 HOH HOH . H 5 HOH A 122 622 128 HOH HOH . H 5 HOH A 123 623 131 HOH HOH . H 5 HOH A 124 624 132 HOH HOH . H 5 HOH A 125 625 133 HOH HOH . H 5 HOH A 126 626 134 HOH HOH . H 5 HOH A 127 627 135 HOH HOH . H 5 HOH A 128 628 136 HOH HOH . H 5 HOH A 129 629 137 HOH HOH . H 5 HOH A 130 630 138 HOH HOH . H 5 HOH A 131 631 139 HOH HOH . H 5 HOH A 132 632 140 HOH HOH . H 5 HOH A 133 633 141 HOH HOH . H 5 HOH A 134 634 142 HOH HOH . H 5 HOH A 135 635 143 HOH HOH . H 5 HOH A 136 636 144 HOH HOH . H 5 HOH A 137 637 146 HOH HOH . H 5 HOH A 138 638 148 HOH HOH . H 5 HOH A 139 639 149 HOH HOH . H 5 HOH A 140 640 150 HOH HOH . H 5 HOH A 141 641 151 HOH HOH . H 5 HOH A 142 642 152 HOH HOH . H 5 HOH A 143 643 153 HOH HOH . H 5 HOH A 144 644 154 HOH HOH . H 5 HOH A 145 645 156 HOH HOH . H 5 HOH A 146 646 158 HOH HOH . H 5 HOH A 147 647 159 HOH HOH . H 5 HOH A 148 648 161 HOH HOH . H 5 HOH A 149 649 163 HOH HOH . H 5 HOH A 150 650 164 HOH HOH . H 5 HOH A 151 651 165 HOH HOH . H 5 HOH A 152 652 166 HOH HOH . H 5 HOH A 153 653 167 HOH HOH . H 5 HOH A 154 654 168 HOH HOH . H 5 HOH A 155 655 169 HOH HOH . H 5 HOH A 156 656 170 HOH HOH . H 5 HOH A 157 657 171 HOH HOH . H 5 HOH A 158 658 172 HOH HOH . H 5 HOH A 159 659 173 HOH HOH . H 5 HOH A 160 660 175 HOH HOH . H 5 HOH A 161 661 176 HOH HOH . H 5 HOH A 162 662 177 HOH HOH . H 5 HOH A 163 663 178 HOH HOH . H 5 HOH A 164 664 179 HOH HOH . H 5 HOH A 165 665 181 HOH HOH . H 5 HOH A 166 666 184 HOH HOH . H 5 HOH A 167 667 185 HOH HOH . H 5 HOH A 168 668 190 HOH HOH . H 5 HOH A 169 669 191 HOH HOH . H 5 HOH A 170 670 192 HOH HOH . H 5 HOH A 171 671 193 HOH HOH . H 5 HOH A 172 672 194 HOH HOH . H 5 HOH A 173 673 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 105.127 -107.161 5.236 0.7 48.54 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 104.54 -106.775 6.458 0.7 54.42 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 105.347 -105.936 4.353 0.7 55.76 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 105.182 -104.757 5.111 0.7 60.92 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 104.341 -105.938 3.208 0.7 58.55 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 104.589 -104.831 2.369 0.7 61.77 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #