data_4LLH # _model_server_result.job_id uepGZTMhCXDRweC6Jf1Pnw _model_server_result.datetime_utc '2024-11-28 05:12:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4llh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 4LLH # _exptl.entry_id 4LLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LLH _cell.length_a 115.47 _cell.length_b 129.69 _cell.length_c 164.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 118 A ALA 147 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc2 A O MET 121 A MET 150 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc3 A O PHE 435 A PHE 464 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc4 A OG1 THR 438 A THR 467 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc5 A OG SER 439 A SER 468 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 B O ALA 118 B ALA 147 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc7 B O MET 121 B MET 150 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc8 B O PHE 435 B PHE 464 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc9 B OG1 THR 438 B THR 467 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc10 B OG SER 439 B SER 468 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LLH _atom_sites.fract_transf_matrix[1][1] 0.00866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 1Y8 A 1 601 2486 1Y8 CHT . E 3 NA A 1 602 1 NA NA . F 2 1Y8 B 1 601 2486 1Y8 CHT . G 3 NA B 1 602 1 NA NA . H 4 CL C 1 601 1 CL CL . I 5 CM5 C 1 602 1 CM5 CM5 . J 2 1Y8 C 1 603 2486 1Y8 CHT . K 5 CM5 C 1 604 1 CM5 CM5 . L 6 HOH A 1 701 1 HOH HOH . L 6 HOH A 2 702 2 HOH HOH . L 6 HOH A 3 703 4 HOH HOH . L 6 HOH A 4 704 5 HOH HOH . L 6 HOH A 5 705 7 HOH HOH . L 6 HOH A 6 706 8 HOH HOH . L 6 HOH A 7 707 9 HOH HOH . L 6 HOH A 8 708 10 HOH HOH . L 6 HOH A 9 709 11 HOH HOH . L 6 HOH A 10 710 12 HOH HOH . L 6 HOH A 11 711 13 HOH HOH . L 6 HOH A 12 712 14 HOH HOH . L 6 HOH A 13 713 15 HOH HOH . L 6 HOH A 14 714 18 HOH HOH . L 6 HOH A 15 715 19 HOH HOH . L 6 HOH A 16 716 20 HOH HOH . L 6 HOH A 17 717 21 HOH HOH . L 6 HOH A 18 718 22 HOH HOH . L 6 HOH A 19 719 23 HOH HOH . L 6 HOH A 20 720 60 HOH HOH . L 6 HOH A 21 721 68 HOH HOH . L 6 HOH A 22 722 69 HOH HOH . L 6 HOH A 23 723 70 HOH HOH . L 6 HOH A 24 724 71 HOH HOH . L 6 HOH A 25 725 90 HOH HOH . M 6 HOH B 1 701 24 HOH HOH . M 6 HOH B 2 702 25 HOH HOH . M 6 HOH B 3 703 26 HOH HOH . M 6 HOH B 4 704 27 HOH HOH . M 6 HOH B 5 705 28 HOH HOH . M 6 HOH B 6 706 29 HOH HOH . M 6 HOH B 7 707 30 HOH HOH . M 6 HOH B 8 708 31 HOH HOH . M 6 HOH B 9 709 32 HOH HOH . M 6 HOH B 10 710 33 HOH HOH . M 6 HOH B 11 711 34 HOH HOH . M 6 HOH B 12 712 35 HOH HOH . M 6 HOH B 13 713 39 HOH HOH . M 6 HOH B 14 714 40 HOH HOH . M 6 HOH B 15 715 41 HOH HOH . M 6 HOH B 16 716 42 HOH HOH . M 6 HOH B 17 717 43 HOH HOH . M 6 HOH B 18 718 67 HOH HOH . M 6 HOH B 19 719 72 HOH HOH . M 6 HOH B 20 720 73 HOH HOH . M 6 HOH B 21 721 74 HOH HOH . M 6 HOH B 22 722 75 HOH HOH . M 6 HOH B 23 723 76 HOH HOH . M 6 HOH B 24 724 77 HOH HOH . M 6 HOH B 25 725 91 HOH HOH . M 6 HOH B 26 726 92 HOH HOH . N 6 HOH C 1 701 3 HOH HOH . N 6 HOH C 2 702 16 HOH HOH . N 6 HOH C 3 703 17 HOH HOH . N 6 HOH C 4 704 36 HOH HOH . N 6 HOH C 5 705 37 HOH HOH . N 6 HOH C 6 706 38 HOH HOH . N 6 HOH C 7 707 44 HOH HOH . N 6 HOH C 8 708 45 HOH HOH . N 6 HOH C 9 709 46 HOH HOH . N 6 HOH C 10 710 47 HOH HOH . N 6 HOH C 11 711 48 HOH HOH . N 6 HOH C 12 712 49 HOH HOH . N 6 HOH C 13 713 50 HOH HOH . N 6 HOH C 14 714 51 HOH HOH . N 6 HOH C 15 715 52 HOH HOH . N 6 HOH C 16 716 53 HOH HOH . N 6 HOH C 17 717 54 HOH HOH . N 6 HOH C 18 718 55 HOH HOH . N 6 HOH C 19 719 56 HOH HOH . N 6 HOH C 20 720 57 HOH HOH . N 6 HOH C 21 721 58 HOH HOH . N 6 HOH C 22 722 59 HOH HOH . N 6 HOH C 23 723 61 HOH HOH . N 6 HOH C 24 724 62 HOH HOH . N 6 HOH C 25 725 63 HOH HOH . N 6 HOH C 26 726 64 HOH HOH . N 6 HOH C 27 727 65 HOH HOH . N 6 HOH C 28 728 66 HOH HOH . N 6 HOH C 29 729 78 HOH HOH . N 6 HOH C 30 730 79 HOH HOH . N 6 HOH C 31 731 80 HOH HOH . N 6 HOH C 32 732 81 HOH HOH . N 6 HOH C 33 733 82 HOH HOH . N 6 HOH C 34 734 83 HOH HOH . N 6 HOH C 35 735 84 HOH HOH . N 6 HOH C 36 736 85 HOH HOH . N 6 HOH C 37 737 86 HOH HOH . N 6 HOH C 38 738 87 HOH HOH . N 6 HOH C 39 739 88 HOH HOH . N 6 HOH C 40 740 89 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.124 _atom_site.Cartn_y 29.17 _atom_site.Cartn_z 60.486 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 96.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #