data_4LLP # _model_server_result.job_id 6fuhOO4t39K1ZICJx7eMqA _model_server_result.datetime_utc '2024-11-24 05:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4llp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 4LLP # _exptl.entry_id 4LLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LLP _cell.length_a 50.383 _cell.length_b 82.588 _cell.length_c 154.746 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 E NI NI . A NI 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 E NI NI . A NI 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 E NI NI . A NI 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 F NI NI . A NI 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 A OD2 ASP 230 A ASP 674 1_555 E NI NI . A NI 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 E NI NI . A NI 803 1_555 I O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc7 E NI NI . A NI 803 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc8 F NI NI . A NI 804 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 F NI NI . A NI 804 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 F NI NI . A NI 804 1_555 I O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 F NI NI . A NI 804 1_555 I O HOH . A HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc12 F NI NI . A NI 804 1_555 I O HOH . A HOH 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc13 B NE2 HIS 85 B HIS 529 1_555 G NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc14 B NE2 HIS 119 B HIS 563 1_555 G NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc15 B OD2 ASP 120 B ASP 564 1_555 G NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc16 B OD1 ASP 120 B ASP 564 1_555 H NI NI . B NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc17 B OD1 ASP 230 B ASP 674 1_555 G NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc18 G NI NI . B NI 901 1_555 J O HOH . B HOH 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc19 H NI NI . B NI 902 1_555 J O HOH . B HOH 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc20 H NI NI . B NI 902 1_555 J O HOH . B HOH 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LLP _atom_sites.fract_transf_matrix[1][1] 0.019848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4ZE A 1 801 899 4ZE 4ZE . D 2 4ZE A 1 802 900 4ZE 4ZE . E 3 NI A 1 803 901 NI NI . F 3 NI A 1 804 902 NI NI . G 3 NI B 1 901 901 NI NI . H 3 NI B 1 902 902 NI NI . I 4 HOH A 1 901 1 HOH HOH . I 4 HOH A 2 902 2 HOH HOH . I 4 HOH A 3 903 3 HOH HOH . I 4 HOH A 4 904 4 HOH HOH . I 4 HOH A 5 905 5 HOH HOH . I 4 HOH A 6 906 6 HOH HOH . I 4 HOH A 7 907 7 HOH HOH . I 4 HOH A 8 908 8 HOH HOH . I 4 HOH A 9 909 10 HOH HOH . I 4 HOH A 10 910 11 HOH HOH . I 4 HOH A 11 911 12 HOH HOH . I 4 HOH A 12 912 13 HOH HOH . I 4 HOH A 13 913 14 HOH HOH . I 4 HOH A 14 914 15 HOH HOH . I 4 HOH A 15 915 16 HOH HOH . I 4 HOH A 16 916 17 HOH HOH . I 4 HOH A 17 917 18 HOH HOH . I 4 HOH A 18 918 19 HOH HOH . I 4 HOH A 19 919 20 HOH HOH . I 4 HOH A 20 920 22 HOH HOH . I 4 HOH A 21 921 23 HOH HOH . I 4 HOH A 22 922 24 HOH HOH . I 4 HOH A 23 923 25 HOH HOH . I 4 HOH A 24 924 26 HOH HOH . I 4 HOH A 25 925 27 HOH HOH . I 4 HOH A 26 926 29 HOH HOH . I 4 HOH A 27 927 32 HOH HOH . I 4 HOH A 28 928 36 HOH HOH . I 4 HOH A 29 929 37 HOH HOH . I 4 HOH A 30 930 38 HOH HOH . I 4 HOH A 31 931 39 HOH HOH . I 4 HOH A 32 932 40 HOH HOH . I 4 HOH A 33 933 41 HOH HOH . I 4 HOH A 34 934 42 HOH HOH . I 4 HOH A 35 935 43 HOH HOH . I 4 HOH A 36 936 44 HOH HOH . I 4 HOH A 37 937 46 HOH HOH . I 4 HOH A 38 938 47 HOH HOH . I 4 HOH A 39 939 48 HOH HOH . I 4 HOH A 40 940 50 HOH HOH . I 4 HOH A 41 941 51 HOH HOH . I 4 HOH A 42 942 52 HOH HOH . I 4 HOH A 43 943 55 HOH HOH . I 4 HOH A 44 944 56 HOH HOH . I 4 HOH A 45 945 58 HOH HOH . I 4 HOH A 46 946 61 HOH HOH . I 4 HOH A 47 947 62 HOH HOH . I 4 HOH A 48 948 63 HOH HOH . I 4 HOH A 49 949 65 HOH HOH . I 4 HOH A 50 950 66 HOH HOH . I 4 HOH A 51 951 68 HOH HOH . I 4 HOH A 52 952 69 HOH HOH . I 4 HOH A 53 953 70 HOH HOH . I 4 HOH A 54 954 71 HOH HOH . I 4 HOH A 55 955 72 HOH HOH . I 4 HOH A 56 956 74 HOH HOH . I 4 HOH A 57 957 75 HOH HOH . I 4 HOH A 58 958 76 HOH HOH . I 4 HOH A 59 959 78 HOH HOH . I 4 HOH A 60 960 81 HOH HOH . I 4 HOH A 61 961 82 HOH HOH . I 4 HOH A 62 962 84 HOH HOH . I 4 HOH A 63 963 85 HOH HOH . I 4 HOH A 64 964 87 HOH HOH . I 4 HOH A 65 965 89 HOH HOH . I 4 HOH A 66 966 91 HOH HOH . I 4 HOH A 67 967 92 HOH HOH . I 4 HOH A 68 968 93 HOH HOH . I 4 HOH A 69 969 95 HOH HOH . I 4 HOH A 70 970 99 HOH HOH . I 4 HOH A 71 971 101 HOH HOH . I 4 HOH A 72 972 102 HOH HOH . I 4 HOH A 73 973 103 HOH HOH . I 4 HOH A 74 974 104 HOH HOH . I 4 HOH A 75 975 105 HOH HOH . I 4 HOH A 76 976 108 HOH HOH . I 4 HOH A 77 977 111 HOH HOH . I 4 HOH A 78 978 112 HOH HOH . I 4 HOH A 79 979 113 HOH HOH . I 4 HOH A 80 980 115 HOH HOH . I 4 HOH A 81 981 116 HOH HOH . I 4 HOH A 82 982 118 HOH HOH . I 4 HOH A 83 983 119 HOH HOH . I 4 HOH A 84 984 122 HOH HOH . I 4 HOH A 85 985 123 HOH HOH . I 4 HOH A 86 986 125 HOH HOH . I 4 HOH A 87 987 129 HOH HOH . I 4 HOH A 88 988 130 HOH HOH . I 4 HOH A 89 989 131 HOH HOH . I 4 HOH A 90 990 132 HOH HOH . I 4 HOH A 91 991 134 HOH HOH . I 4 HOH A 92 992 135 HOH HOH . I 4 HOH A 93 993 136 HOH HOH . I 4 HOH A 94 994 137 HOH HOH . I 4 HOH A 95 995 138 HOH HOH . I 4 HOH A 96 996 140 HOH HOH . I 4 HOH A 97 997 141 HOH HOH . I 4 HOH A 98 998 143 HOH HOH . I 4 HOH A 99 999 144 HOH HOH . I 4 HOH A 100 1000 148 HOH HOH . I 4 HOH A 101 1001 150 HOH HOH . I 4 HOH A 102 1002 151 HOH HOH . I 4 HOH A 103 1003 155 HOH HOH . I 4 HOH A 104 1004 158 HOH HOH . I 4 HOH A 105 1005 159 HOH HOH . I 4 HOH A 106 1006 160 HOH HOH . I 4 HOH A 107 1007 161 HOH HOH . I 4 HOH A 108 1008 162 HOH HOH . I 4 HOH A 109 1009 163 HOH HOH . I 4 HOH A 110 1010 164 HOH HOH . I 4 HOH A 111 1011 168 HOH HOH . I 4 HOH A 112 1012 169 HOH HOH . I 4 HOH A 113 1013 170 HOH HOH . I 4 HOH A 114 1014 171 HOH HOH . I 4 HOH A 115 1015 172 HOH HOH . I 4 HOH A 116 1016 174 HOH HOH . I 4 HOH A 117 1017 175 HOH HOH . I 4 HOH A 118 1018 176 HOH HOH . I 4 HOH A 119 1019 177 HOH HOH . I 4 HOH A 120 1020 178 HOH HOH . I 4 HOH A 121 1021 179 HOH HOH . I 4 HOH A 122 1022 180 HOH HOH . I 4 HOH A 123 1023 181 HOH HOH . I 4 HOH A 124 1024 182 HOH HOH . I 4 HOH A 125 1025 183 HOH HOH . I 4 HOH A 126 1026 184 HOH HOH . I 4 HOH A 127 1027 185 HOH HOH . I 4 HOH A 128 1028 186 HOH HOH . I 4 HOH A 129 1029 187 HOH HOH . I 4 HOH A 130 1030 188 HOH HOH . I 4 HOH A 131 1031 189 HOH HOH . I 4 HOH A 132 1032 190 HOH HOH . I 4 HOH A 133 1033 191 HOH HOH . I 4 HOH A 134 1034 192 HOH HOH . I 4 HOH A 135 1035 193 HOH HOH . I 4 HOH A 136 1036 194 HOH HOH . I 4 HOH A 137 1037 195 HOH HOH . I 4 HOH A 138 1038 196 HOH HOH . I 4 HOH A 139 1039 197 HOH HOH . I 4 HOH A 140 1040 198 HOH HOH . I 4 HOH A 141 1041 199 HOH HOH . I 4 HOH A 142 1042 200 HOH HOH . I 4 HOH A 143 1043 201 HOH HOH . I 4 HOH A 144 1044 202 HOH HOH . I 4 HOH A 145 1045 203 HOH HOH . I 4 HOH A 146 1046 204 HOH HOH . I 4 HOH A 147 1047 205 HOH HOH . I 4 HOH A 148 1048 206 HOH HOH . I 4 HOH A 149 1049 207 HOH HOH . I 4 HOH A 150 1050 208 HOH HOH . I 4 HOH A 151 1051 209 HOH HOH . I 4 HOH A 152 1052 210 HOH HOH . I 4 HOH A 153 1053 211 HOH HOH . I 4 HOH A 154 1054 212 HOH HOH . I 4 HOH A 155 1055 213 HOH HOH . I 4 HOH A 156 1056 222 HOH HOH . I 4 HOH A 157 1057 223 HOH HOH . I 4 HOH A 158 1058 224 HOH HOH . I 4 HOH A 159 1059 226 HOH HOH . I 4 HOH A 160 1060 228 HOH HOH . I 4 HOH A 161 1061 229 HOH HOH . I 4 HOH A 162 1062 231 HOH HOH . I 4 HOH A 163 1063 233 HOH HOH . I 4 HOH A 164 1064 234 HOH HOH . I 4 HOH A 165 1065 235 HOH HOH . J 4 HOH B 1 1001 9 HOH HOH . J 4 HOH B 2 1002 21 HOH HOH . J 4 HOH B 3 1003 28 HOH HOH . J 4 HOH B 4 1004 30 HOH HOH . J 4 HOH B 5 1005 31 HOH HOH . J 4 HOH B 6 1006 33 HOH HOH . J 4 HOH B 7 1007 34 HOH HOH . J 4 HOH B 8 1008 35 HOH HOH . J 4 HOH B 9 1009 45 HOH HOH . J 4 HOH B 10 1010 49 HOH HOH . J 4 HOH B 11 1011 53 HOH HOH . J 4 HOH B 12 1012 54 HOH HOH . J 4 HOH B 13 1013 57 HOH HOH . J 4 HOH B 14 1014 59 HOH HOH . J 4 HOH B 15 1015 60 HOH HOH . J 4 HOH B 16 1016 64 HOH HOH . J 4 HOH B 17 1017 67 HOH HOH . J 4 HOH B 18 1018 73 HOH HOH . J 4 HOH B 19 1019 77 HOH HOH . J 4 HOH B 20 1020 79 HOH HOH . J 4 HOH B 21 1021 80 HOH HOH . J 4 HOH B 22 1022 83 HOH HOH . J 4 HOH B 23 1023 86 HOH HOH . J 4 HOH B 24 1024 88 HOH HOH . J 4 HOH B 25 1025 90 HOH HOH . J 4 HOH B 26 1026 94 HOH HOH . J 4 HOH B 27 1027 96 HOH HOH . J 4 HOH B 28 1028 97 HOH HOH . J 4 HOH B 29 1029 98 HOH HOH . J 4 HOH B 30 1030 100 HOH HOH . J 4 HOH B 31 1031 106 HOH HOH . J 4 HOH B 32 1032 107 HOH HOH . J 4 HOH B 33 1033 109 HOH HOH . J 4 HOH B 34 1034 110 HOH HOH . J 4 HOH B 35 1035 114 HOH HOH . J 4 HOH B 36 1036 117 HOH HOH . J 4 HOH B 37 1037 120 HOH HOH . J 4 HOH B 38 1038 121 HOH HOH . J 4 HOH B 39 1039 124 HOH HOH . J 4 HOH B 40 1040 126 HOH HOH . J 4 HOH B 41 1041 127 HOH HOH . J 4 HOH B 42 1042 128 HOH HOH . J 4 HOH B 43 1043 133 HOH HOH . J 4 HOH B 44 1044 139 HOH HOH . J 4 HOH B 45 1045 142 HOH HOH . J 4 HOH B 46 1046 145 HOH HOH . J 4 HOH B 47 1047 146 HOH HOH . J 4 HOH B 48 1048 147 HOH HOH . J 4 HOH B 49 1049 149 HOH HOH . J 4 HOH B 50 1050 152 HOH HOH . J 4 HOH B 51 1051 153 HOH HOH . J 4 HOH B 52 1052 154 HOH HOH . J 4 HOH B 53 1053 156 HOH HOH . J 4 HOH B 54 1054 157 HOH HOH . J 4 HOH B 55 1055 165 HOH HOH . J 4 HOH B 56 1056 166 HOH HOH . J 4 HOH B 57 1057 167 HOH HOH . J 4 HOH B 58 1058 173 HOH HOH . J 4 HOH B 59 1059 214 HOH HOH . J 4 HOH B 60 1060 215 HOH HOH . J 4 HOH B 61 1061 216 HOH HOH . J 4 HOH B 62 1062 217 HOH HOH . J 4 HOH B 63 1063 218 HOH HOH . J 4 HOH B 64 1064 219 HOH HOH . J 4 HOH B 65 1065 220 HOH HOH . J 4 HOH B 66 1066 221 HOH HOH . J 4 HOH B 67 1067 225 HOH HOH . J 4 HOH B 68 1068 227 HOH HOH . J 4 HOH B 69 1069 230 HOH HOH . J 4 HOH B 70 1070 232 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.267 _atom_site.Cartn_y 6.506 _atom_site.Cartn_z 48.147 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 803 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #