data_4LM5
#
_model_server_result.job_id            Aojqz9LOgUeV6TmlqdyxPg 
_model_server_result.datetime_utc      '2024-12-02 00:12:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lm5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    4LM5 
#
_exptl.entry_id    4LM5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4LM5 
_cell.length_a            97.677 
_cell.length_b            97.677 
_cell.length_c            80.781 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 133 A ASN 160 1_555 A N CSO 134 A CSO 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C CSO 134 A CSO 161 1_555 A N GLY 135 A GLY 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 143 n n 
C1 C2 GOL sing 144 n n 
C1 H11 GOL sing 145 n n 
C1 H12 GOL sing 146 n n 
O1 HO1 GOL sing 147 n n 
C2 O2 GOL sing 148 n n 
C2 C3 GOL sing 149 n n 
C2 H2 GOL sing 150 n n 
O2 HO2 GOL sing 151 n n 
C3 O3 GOL sing 152 n n 
C3 H31 GOL sing 153 n n 
C3 H32 GOL sing 154 n n 
O3 HO3 GOL sing 155 n n 
#
_atom_sites.entry_id                     4LM5 
_atom_sites.fract_transf_matrix[1][1]    0.010238 
_atom_sites.fract_transf_matrix[1][2]    0.005911 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Q17 A 1 401 1 Q17 LIG . 
C 3 GOL A 1 402 1 GOL GOL . 
D 3 GOL A 1 403 1 GOL GOL . 
E 3 GOL A 1 404 1 GOL GOL . 
F 4 HOH A 1 501 1 HOH HOH . 
F 4 HOH A 2 502 2 HOH HOH . 
F 4 HOH A 3 503 3 HOH HOH . 
F 4 HOH A 4 504 4 HOH HOH . 
F 4 HOH A 5 505 5 HOH HOH . 
F 4 HOH A 6 506 6 HOH HOH . 
F 4 HOH A 7 507 7 HOH HOH . 
F 4 HOH A 8 508 8 HOH HOH . 
F 4 HOH A 9 509 9 HOH HOH . 
F 4 HOH A 10 510 10 HOH HOH . 
F 4 HOH A 11 511 11 HOH HOH . 
F 4 HOH A 12 512 12 HOH HOH . 
F 4 HOH A 13 513 13 HOH HOH . 
F 4 HOH A 14 514 14 HOH HOH . 
F 4 HOH A 15 515 15 HOH HOH . 
F 4 HOH A 16 516 16 HOH HOH . 
F 4 HOH A 17 517 17 HOH HOH . 
F 4 HOH A 18 518 18 HOH HOH . 
F 4 HOH A 19 519 19 HOH HOH . 
F 4 HOH A 20 520 20 HOH HOH . 
F 4 HOH A 21 521 21 HOH HOH . 
F 4 HOH A 22 522 22 HOH HOH . 
F 4 HOH A 23 523 23 HOH HOH . 
F 4 HOH A 24 524 24 HOH HOH . 
F 4 HOH A 25 525 25 HOH HOH . 
F 4 HOH A 26 526 26 HOH HOH . 
F 4 HOH A 27 527 27 HOH HOH . 
F 4 HOH A 28 528 28 HOH HOH . 
F 4 HOH A 29 529 29 HOH HOH . 
F 4 HOH A 30 530 30 HOH HOH . 
F 4 HOH A 31 531 31 HOH HOH . 
F 4 HOH A 32 532 32 HOH HOH . 
F 4 HOH A 33 533 33 HOH HOH . 
F 4 HOH A 34 534 34 HOH HOH . 
F 4 HOH A 35 535 35 HOH HOH . 
F 4 HOH A 36 536 36 HOH HOH . 
F 4 HOH A 37 537 37 HOH HOH . 
F 4 HOH A 38 538 38 HOH HOH . 
F 4 HOH A 39 539 39 HOH HOH . 
F 4 HOH A 40 540 40 HOH HOH . 
F 4 HOH A 41 541 41 HOH HOH . 
F 4 HOH A 42 542 42 HOH HOH . 
F 4 HOH A 43 543 43 HOH HOH . 
F 4 HOH A 44 544 44 HOH HOH . 
F 4 HOH A 45 545 45 HOH HOH . 
F 4 HOH A 46 546 46 HOH HOH . 
F 4 HOH A 47 547 47 HOH HOH . 
F 4 HOH A 48 548 48 HOH HOH . 
F 4 HOH A 49 549 49 HOH HOH . 
F 4 HOH A 50 550 50 HOH HOH . 
F 4 HOH A 51 551 51 HOH HOH . 
F 4 HOH A 52 552 52 HOH HOH . 
F 4 HOH A 53 553 53 HOH HOH . 
F 4 HOH A 54 554 54 HOH HOH . 
F 4 HOH A 55 555 55 HOH HOH . 
F 4 HOH A 56 556 56 HOH HOH . 
F 4 HOH A 57 557 57 HOH HOH . 
F 4 HOH A 58 558 58 HOH HOH . 
F 4 HOH A 59 559 59 HOH HOH . 
F 4 HOH A 60 560 60 HOH HOH . 
F 4 HOH A 61 561 61 HOH HOH . 
F 4 HOH A 62 562 62 HOH HOH . 
F 4 HOH A 63 563 63 HOH HOH . 
F 4 HOH A 64 564 64 HOH HOH . 
F 4 HOH A 65 565 65 HOH HOH . 
F 4 HOH A 66 566 66 HOH HOH . 
F 4 HOH A 67 567 67 HOH HOH . 
F 4 HOH A 68 568 68 HOH HOH . 
F 4 HOH A 69 569 69 HOH HOH . 
F 4 HOH A 70 570 70 HOH HOH . 
F 4 HOH A 71 571 71 HOH HOH . 
F 4 HOH A 72 572 72 HOH HOH . 
F 4 HOH A 73 573 73 HOH HOH . 
F 4 HOH A 74 574 74 HOH HOH . 
F 4 HOH A 75 575 75 HOH HOH . 
F 4 HOH A 76 576 76 HOH HOH . 
F 4 HOH A 77 577 77 HOH HOH . 
F 4 HOH A 78 578 78 HOH HOH . 
F 4 HOH A 79 579 79 HOH HOH . 
F 4 HOH A 80 580 80 HOH HOH . 
F 4 HOH A 81 581 81 HOH HOH . 
F 4 HOH A 82 582 82 HOH HOH . 
F 4 HOH A 83 583 83 HOH HOH . 
F 4 HOH A 84 584 84 HOH HOH . 
F 4 HOH A 85 585 85 HOH HOH . 
F 4 HOH A 86 586 86 HOH HOH . 
F 4 HOH A 87 587 87 HOH HOH . 
F 4 HOH A 88 588 88 HOH HOH . 
F 4 HOH A 89 589 89 HOH HOH . 
F 4 HOH A 90 590 90 HOH HOH . 
F 4 HOH A 91 591 91 HOH HOH . 
F 4 HOH A 92 592 92 HOH HOH . 
F 4 HOH A 93 593 93 HOH HOH . 
F 4 HOH A 94 594 94 HOH HOH . 
F 4 HOH A 95 595 95 HOH HOH . 
F 4 HOH A 96 596 96 HOH HOH . 
F 4 HOH A 97 597 97 HOH HOH . 
F 4 HOH A 98 598 98 HOH HOH . 
F 4 HOH A 99 599 99 HOH HOH . 
F 4 HOH A 100 600 100 HOH HOH . 
F 4 HOH A 101 601 101 HOH HOH . 
F 4 HOH A 102 602 102 HOH HOH . 
F 4 HOH A 103 603 103 HOH HOH . 
F 4 HOH A 104 604 104 HOH HOH . 
F 4 HOH A 105 605 105 HOH HOH . 
F 4 HOH A 106 606 106 HOH HOH . 
F 4 HOH A 107 607 107 HOH HOH . 
F 4 HOH A 108 608 108 HOH HOH . 
F 4 HOH A 109 609 109 HOH HOH . 
F 4 HOH A 110 610 110 HOH HOH . 
F 4 HOH A 111 611 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 45.827 2.83 5.643 1 50.12 ? C1 GOL 404 A 1 
HETATM 2 O O1 GOL . . . E 3 45.761 4.15 6.104 1 39.68 ? O1 GOL 404 A 1 
HETATM 3 C C2 GOL . . . E 3 44.855 2.694 4.485 1 60.56 ? C2 GOL 404 A 1 
HETATM 4 O O2 GOL . . . E 3 43.53 2.643 5 1 62.76 ? O2 GOL 404 A 1 
HETATM 5 C C3 GOL . . . E 3 45.265 1.415 3.75 1 60.44 ? C3 GOL 404 A 1 
HETATM 6 O O3 GOL . . . E 3 44.389 1.215 2.677 1 60.14 ? O3 GOL 404 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#