data_4LMI # _model_server_result.job_id JHXIoqz-CH1ap6D9b0Gp2A _model_server_result.datetime_utc '2025-03-01 07:08:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4LMI # _exptl.entry_id 4LMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LMI _cell.length_a 48.536 _cell.length_b 69.873 _cell.length_c 94.809 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C MSE 4 B MSE 1 1_555 B N THR 5 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 4LMI _atom_sites.fract_transf_matrix[1][1] 0.020603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EPE A 1 201 201 EPE EPE . D 2 EPE B 1 201 201 EPE EPE . E 3 HOH A 1 301 1 HOH HOH . E 3 HOH A 2 302 2 HOH HOH . E 3 HOH A 3 303 3 HOH HOH . E 3 HOH A 4 304 6 HOH HOH . E 3 HOH A 5 305 9 HOH HOH . E 3 HOH A 6 306 10 HOH HOH . E 3 HOH A 7 307 13 HOH HOH . E 3 HOH A 8 308 14 HOH HOH . E 3 HOH A 9 309 15 HOH HOH . E 3 HOH A 10 310 20 HOH HOH . E 3 HOH A 11 311 21 HOH HOH . E 3 HOH A 12 312 24 HOH HOH . E 3 HOH A 13 313 25 HOH HOH . E 3 HOH A 14 314 26 HOH HOH . E 3 HOH A 15 315 31 HOH HOH . E 3 HOH A 16 316 32 HOH HOH . E 3 HOH A 17 317 35 HOH HOH . E 3 HOH A 18 318 36 HOH HOH . E 3 HOH A 19 319 38 HOH HOH . E 3 HOH A 20 320 40 HOH HOH . E 3 HOH A 21 321 45 HOH HOH . E 3 HOH A 22 322 46 HOH HOH . E 3 HOH A 23 323 51 HOH HOH . E 3 HOH A 24 324 52 HOH HOH . E 3 HOH A 25 325 55 HOH HOH . E 3 HOH A 26 326 56 HOH HOH . E 3 HOH A 27 327 58 HOH HOH . E 3 HOH A 28 328 59 HOH HOH . E 3 HOH A 29 329 62 HOH HOH . E 3 HOH A 30 330 63 HOH HOH . E 3 HOH A 31 331 68 HOH HOH . E 3 HOH A 32 332 73 HOH HOH . E 3 HOH A 33 333 74 HOH HOH . E 3 HOH A 34 334 78 HOH HOH . E 3 HOH A 35 335 79 HOH HOH . E 3 HOH A 36 336 80 HOH HOH . E 3 HOH A 37 337 83 HOH HOH . E 3 HOH A 38 338 85 HOH HOH . E 3 HOH A 39 339 87 HOH HOH . E 3 HOH A 40 340 89 HOH HOH . E 3 HOH A 41 341 91 HOH HOH . E 3 HOH A 42 342 92 HOH HOH . E 3 HOH A 43 343 93 HOH HOH . E 3 HOH A 44 344 94 HOH HOH . E 3 HOH A 45 345 95 HOH HOH . E 3 HOH A 46 346 100 HOH HOH . E 3 HOH A 47 347 102 HOH HOH . E 3 HOH A 48 348 103 HOH HOH . E 3 HOH A 49 349 104 HOH HOH . E 3 HOH A 50 350 105 HOH HOH . E 3 HOH A 51 351 106 HOH HOH . E 3 HOH A 52 352 107 HOH HOH . E 3 HOH A 53 353 108 HOH HOH . E 3 HOH A 54 354 109 HOH HOH . E 3 HOH A 55 355 110 HOH HOH . E 3 HOH A 56 356 111 HOH HOH . E 3 HOH A 57 357 113 HOH HOH . E 3 HOH A 58 358 115 HOH HOH . E 3 HOH A 59 359 117 HOH HOH . E 3 HOH A 60 360 119 HOH HOH . E 3 HOH A 61 361 120 HOH HOH . E 3 HOH A 62 362 121 HOH HOH . E 3 HOH A 63 363 122 HOH HOH . E 3 HOH A 64 364 125 HOH HOH . E 3 HOH A 65 365 130 HOH HOH . E 3 HOH A 66 366 131 HOH HOH . E 3 HOH A 67 367 132 HOH HOH . E 3 HOH A 68 368 135 HOH HOH . E 3 HOH A 69 369 136 HOH HOH . E 3 HOH A 70 370 140 HOH HOH . E 3 HOH A 71 371 142 HOH HOH . E 3 HOH A 72 372 145 HOH HOH . E 3 HOH A 73 373 149 HOH HOH . E 3 HOH A 74 374 153 HOH HOH . E 3 HOH A 75 375 154 HOH HOH . E 3 HOH A 76 376 156 HOH HOH . E 3 HOH A 77 377 158 HOH HOH . E 3 HOH A 78 378 160 HOH HOH . E 3 HOH A 79 379 161 HOH HOH . E 3 HOH A 80 380 162 HOH HOH . E 3 HOH A 81 381 163 HOH HOH . E 3 HOH A 82 382 164 HOH HOH . E 3 HOH A 83 383 166 HOH HOH . E 3 HOH A 84 384 167 HOH HOH . E 3 HOH A 85 385 170 HOH HOH . E 3 HOH A 86 386 172 HOH HOH . E 3 HOH A 87 387 175 HOH HOH . E 3 HOH A 88 388 178 HOH HOH . E 3 HOH A 89 389 179 HOH HOH . E 3 HOH A 90 390 180 HOH HOH . E 3 HOH A 91 391 181 HOH HOH . E 3 HOH A 92 392 184 HOH HOH . E 3 HOH A 93 393 185 HOH HOH . E 3 HOH A 94 394 187 HOH HOH . E 3 HOH A 95 395 188 HOH HOH . E 3 HOH A 96 396 190 HOH HOH . E 3 HOH A 97 397 191 HOH HOH . E 3 HOH A 98 398 192 HOH HOH . E 3 HOH A 99 399 193 HOH HOH . E 3 HOH A 100 400 194 HOH HOH . E 3 HOH A 101 401 196 HOH HOH . E 3 HOH A 102 402 197 HOH HOH . E 3 HOH A 103 403 201 HOH HOH . E 3 HOH A 104 404 202 HOH HOH . E 3 HOH A 105 405 204 HOH HOH . E 3 HOH A 106 406 205 HOH HOH . E 3 HOH A 107 407 206 HOH HOH . E 3 HOH A 108 408 207 HOH HOH . E 3 HOH A 109 409 208 HOH HOH . E 3 HOH A 110 410 210 HOH HOH . E 3 HOH A 111 411 211 HOH HOH . E 3 HOH A 112 412 213 HOH HOH . E 3 HOH A 113 413 219 HOH HOH . E 3 HOH A 114 414 221 HOH HOH . E 3 HOH A 115 415 227 HOH HOH . E 3 HOH A 116 416 228 HOH HOH . E 3 HOH A 117 417 229 HOH HOH . F 3 HOH B 1 301 4 HOH HOH . F 3 HOH B 2 302 5 HOH HOH . F 3 HOH B 3 303 7 HOH HOH . F 3 HOH B 4 304 8 HOH HOH . F 3 HOH B 5 305 11 HOH HOH . F 3 HOH B 6 306 12 HOH HOH . F 3 HOH B 7 307 16 HOH HOH . F 3 HOH B 8 308 17 HOH HOH . F 3 HOH B 9 309 18 HOH HOH . F 3 HOH B 10 310 19 HOH HOH . F 3 HOH B 11 311 22 HOH HOH . F 3 HOH B 12 312 23 HOH HOH . F 3 HOH B 13 313 27 HOH HOH . F 3 HOH B 14 314 28 HOH HOH . F 3 HOH B 15 315 29 HOH HOH . F 3 HOH B 16 316 30 HOH HOH . F 3 HOH B 17 317 33 HOH HOH . F 3 HOH B 18 318 34 HOH HOH . F 3 HOH B 19 319 37 HOH HOH . F 3 HOH B 20 320 39 HOH HOH . F 3 HOH B 21 321 41 HOH HOH . F 3 HOH B 22 322 42 HOH HOH . F 3 HOH B 23 323 43 HOH HOH . F 3 HOH B 24 324 44 HOH HOH . F 3 HOH B 25 325 47 HOH HOH . F 3 HOH B 26 326 48 HOH HOH . F 3 HOH B 27 327 49 HOH HOH . F 3 HOH B 28 328 50 HOH HOH . F 3 HOH B 29 329 53 HOH HOH . F 3 HOH B 30 330 54 HOH HOH . F 3 HOH B 31 331 57 HOH HOH . F 3 HOH B 32 332 60 HOH HOH . F 3 HOH B 33 333 61 HOH HOH . F 3 HOH B 34 334 64 HOH HOH . F 3 HOH B 35 335 65 HOH HOH . F 3 HOH B 36 336 66 HOH HOH . F 3 HOH B 37 337 67 HOH HOH . F 3 HOH B 38 338 69 HOH HOH . F 3 HOH B 39 339 70 HOH HOH . F 3 HOH B 40 340 71 HOH HOH . F 3 HOH B 41 341 72 HOH HOH . F 3 HOH B 42 342 75 HOH HOH . F 3 HOH B 43 343 76 HOH HOH . F 3 HOH B 44 344 77 HOH HOH . F 3 HOH B 45 345 81 HOH HOH . F 3 HOH B 46 346 82 HOH HOH . F 3 HOH B 47 347 84 HOH HOH . F 3 HOH B 48 348 86 HOH HOH . F 3 HOH B 49 349 88 HOH HOH . F 3 HOH B 50 350 90 HOH HOH . F 3 HOH B 51 351 96 HOH HOH . F 3 HOH B 52 352 97 HOH HOH . F 3 HOH B 53 353 98 HOH HOH . F 3 HOH B 54 354 99 HOH HOH . F 3 HOH B 55 355 101 HOH HOH . F 3 HOH B 56 356 112 HOH HOH . F 3 HOH B 57 357 114 HOH HOH . F 3 HOH B 58 358 116 HOH HOH . F 3 HOH B 59 359 118 HOH HOH . F 3 HOH B 60 360 123 HOH HOH . F 3 HOH B 61 361 124 HOH HOH . F 3 HOH B 62 362 126 HOH HOH . F 3 HOH B 63 363 127 HOH HOH . F 3 HOH B 64 364 128 HOH HOH . F 3 HOH B 65 365 129 HOH HOH . F 3 HOH B 66 366 133 HOH HOH . F 3 HOH B 67 367 134 HOH HOH . F 3 HOH B 68 368 137 HOH HOH . F 3 HOH B 69 369 138 HOH HOH . F 3 HOH B 70 370 139 HOH HOH . F 3 HOH B 71 371 141 HOH HOH . F 3 HOH B 72 372 143 HOH HOH . F 3 HOH B 73 373 144 HOH HOH . F 3 HOH B 74 374 146 HOH HOH . F 3 HOH B 75 375 147 HOH HOH . F 3 HOH B 76 376 148 HOH HOH . F 3 HOH B 77 377 150 HOH HOH . F 3 HOH B 78 378 151 HOH HOH . F 3 HOH B 79 379 152 HOH HOH . F 3 HOH B 80 380 155 HOH HOH . F 3 HOH B 81 381 157 HOH HOH . F 3 HOH B 82 382 159 HOH HOH . F 3 HOH B 83 383 165 HOH HOH . F 3 HOH B 84 384 168 HOH HOH . F 3 HOH B 85 385 169 HOH HOH . F 3 HOH B 86 386 171 HOH HOH . F 3 HOH B 87 387 173 HOH HOH . F 3 HOH B 88 388 174 HOH HOH . F 3 HOH B 89 389 176 HOH HOH . F 3 HOH B 90 390 177 HOH HOH . F 3 HOH B 91 391 182 HOH HOH . F 3 HOH B 92 392 183 HOH HOH . F 3 HOH B 93 393 186 HOH HOH . F 3 HOH B 94 394 189 HOH HOH . F 3 HOH B 95 395 195 HOH HOH . F 3 HOH B 96 396 198 HOH HOH . F 3 HOH B 97 397 199 HOH HOH . F 3 HOH B 98 398 200 HOH HOH . F 3 HOH B 99 399 203 HOH HOH . F 3 HOH B 100 400 209 HOH HOH . F 3 HOH B 101 401 212 HOH HOH . F 3 HOH B 102 402 214 HOH HOH . F 3 HOH B 103 403 215 HOH HOH . F 3 HOH B 104 404 216 HOH HOH . F 3 HOH B 105 405 217 HOH HOH . F 3 HOH B 106 406 218 HOH HOH . F 3 HOH B 107 407 220 HOH HOH . F 3 HOH B 108 408 222 HOH HOH . F 3 HOH B 109 409 223 HOH HOH . F 3 HOH B 110 410 224 HOH HOH . F 3 HOH B 111 411 225 HOH HOH . F 3 HOH B 112 412 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 2 35.013 -5.126 105.058 1 30.03 ? N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . C 2 33.579 -5.159 104.711 1 28.73 ? C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . C 2 32.772 -5.445 105.978 1 31.77 ? C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . C 2 33.004 -4.418 107.013 1 31.47 ? N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . C 2 34.448 -4.252 107.289 1 30.77 ? C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . C 2 35.237 -4.007 105.996 1 29.66 ? C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . C 2 32.269 -4.859 108.215 1 33.41 ? C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . C 2 32.357 -3.879 109.381 1 31.58 ? C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . C 2 32.094 -2.536 108.955 1 34.92 ? O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . C 2 35.87 -4.962 103.865 1 29.69 ? C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . C 2 35.764 -6.131 102.877 1 33.62 ? C10 EPE 201 A 1 HETATM 12 S S EPE . . . C 2 36.794 -7.38 103.277 1 42.1 ? S EPE 201 A 1 HETATM 13 O O1S EPE . . . C 2 36.75 -8.402 102.271 1 37.02 ? O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . C 2 38.134 -6.88 103.381 1 47.58 ? O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . C 2 36.337 -8 104.706 1 47.68 ? O3S EPE 201 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #