data_4LMN # _model_server_result.job_id wlyuhOMM9lZlebQvCuZbug _model_server_result.datetime_utc '2024-11-14 04:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4LMN # _exptl.entry_id 4LMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LMN _cell.length_a 81.61 _cell.length_b 81.61 _cell.length_c 129.809 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 40.805 70.676333 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 B O2A ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 B O1B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 B O3G ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4LMN _atom_sites.fract_transf_matrix[1][1] 0.012253 _atom_sites.fract_transf_matrix[1][2] 0.007075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 1 ANP DRG . C 3 MG A 1 502 3 MG MG . D 4 EUI A 1 503 1 EUI XXX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 26.091 28.159 -12.301 1 69.49 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 26.117 29.471 -13.001 1 70.88 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 26.443 28.534 -10.782 1 74.09 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 27.209 27.162 -12.89 1 64.12 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 24.377 26.154 -13.414 1 69.67 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 25.621 25.126 -13.343 1 72.71 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 23.081 25.426 -13.225 1 66.08 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 24.581 27.396 -12.29 1 68.23 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 25.405 26.841 -16.084 1 70.6 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 25.509 28.348 -16.627 1 72.93 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 26.755 26.516 -15.585 1 74.59 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 24.368 26.81 -14.868 1 69.58 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 24.914 25.758 -17.16 1 69 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 23.595 25.214 -17.149 1 74.69 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 23.587 23.739 -17.56 1 77.53 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 24.443 23.611 -18.704 1 76.42 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 24.182 22.83 -16.455 1 80.92 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 23.158 22.245 -15.629 1 84.16 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 24.827 21.712 -17.273 1 81.99 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 23.948 20.581 -17.312 1 89.72 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 24.972 22.274 -18.701 1 75.41 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 26.377 22.266 -19.072 1 69.55 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 27.311 23.208 -18.749 1 65.88 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 28.461 22.854 -19.235 1 67.53 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 28.345 21.659 -19.896 1 69.74 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 29.22 20.796 -20.619 1 65.94 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 30.564 21.126 -20.726 1 61.65 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 28.73 19.65 -21.154 1 64.35 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 27.449 19.322 -21.05 1 63.89 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 26.592 20.099 -20.391 1 69.52 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 26.988 21.259 -19.799 1 71.65 ? C4 ANP 501 A 1 HETATM 32 H H4' ANP . . . B 2 22.577 23.414 -17.813 1 76.96 ? H4' ANP 501 A 1 HETATM 33 H H3' ANP . . . B 2 24.937 23.341 -15.853 1 80.3 ? H3' ANP 501 A 1 HETATM 34 H H2' ANP . . . B 2 25.792 21.445 -16.843 1 81.99 ? H2' ANP 501 A 1 HETATM 35 H H1' ANP . . . B 2 24.412 21.66 -19.406 1 75.73 ? H1' ANP 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #