data_4LMN # _model_server_result.job_id MbZCXpnK0FMayiiM7cLf0g _model_server_result.datetime_utc '2024-12-02 01:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4LMN # _exptl.entry_id 4LMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.31 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3,4-BIS(FLUORANYL)-2-[(2-FLUORANYL-4-IODANYL-PHENYL)AMINO]PHENYL]-[3-OXIDANYL-3-[(2S)-PIPERIDIN-2-YL]AZETIDIN-1-YL]METHANONE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LMN _cell.length_a 81.61 _cell.length_b 81.61 _cell.length_c 129.809 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 40.805 70.676333 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 B O2A ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 B O1B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 B O3G ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? # _chem_comp.formula 'C21 H21 F3 I N3 O2' _chem_comp.formula_weight 531.31 _chem_comp.id EUI _chem_comp.mon_nstd_flag . _chem_comp.name '[3,4-BIS(FLUORANYL)-2-[(2-FLUORANYL-4-IODANYL-PHENYL)AMINO]PHENYL]-[3-OXIDANYL-3-[(2S)-PIPERIDIN-2-YL]AZETIDIN-1-YL]METHANONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C18 EUI doub 133 n n C18 C15 EUI sing 134 n n C18 N19 EUI sing 135 n n C15 C14 EUI sing 136 n y C15 C10 EUI doub 137 n y C14 C13 EUI doub 138 n y C13 C12 EUI sing 139 n y C12 F17 EUI sing 140 n n C12 C11 EUI doub 141 n y C11 F16 EUI sing 142 n n C11 C10 EUI sing 143 n y C10 N9 EUI sing 144 n n N9 C5 EUI sing 145 n n C5 C4 EUI sing 146 n y C5 C6 EUI doub 147 n y C4 C3 EUI doub 148 n y C3 C2 EUI sing 149 n y C2 I8 EUI sing 150 n n C2 C1 EUI doub 151 n y C6 F7 EUI sing 152 n n C6 C1 EUI sing 153 n y N19 C23 EUI sing 154 n n N19 C21 EUI sing 155 n n C23 C22 EUI sing 156 n n C22 C21 EUI sing 157 n n C22 O24 EUI sing 158 n n C22 C25 EUI sing 159 n n C25 C30 EUI sing 160 n n C25 N26 EUI sing 161 n n C30 C29 EUI sing 162 n n C29 C28 EUI sing 163 n n C28 C27 EUI sing 164 n n C27 N26 EUI sing 165 n n C14 H14 EUI sing 166 n n C13 H13 EUI sing 167 n n N9 H9 EUI sing 168 n n C4 H4 EUI sing 169 n n C3 H3 EUI sing 170 n n C1 H1 EUI sing 171 n n C23 H231 EUI sing 172 n n C23 H232 EUI sing 173 n n C21 H211 EUI sing 174 n n C21 H212 EUI sing 175 n n O24 H24 EUI sing 176 n n C25 H25 EUI sing 177 n n C30 H301 EUI sing 178 n n C30 H302 EUI sing 179 n n N26 H26 EUI sing 180 n n C29 H291 EUI sing 181 n n C29 H292 EUI sing 182 n n C28 H281 EUI sing 183 n n C28 H282 EUI sing 184 n n C27 H271 EUI sing 185 n n C27 H272 EUI sing 186 n n # _atom_sites.entry_id 4LMN _atom_sites.fract_transf_matrix[1][1] 0.012253 _atom_sites.fract_transf_matrix[1][2] 0.007075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 1 ANP DRG . C 3 MG A 1 502 3 MG MG . D 4 EUI A 1 503 1 EUI XXX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O20 EUI . . . D 4 31.077 29.645 -15.367 1 64.07 ? O20 EUI 503 A 1 HETATM 2 C C18 EUI . . . D 4 31.566 30.147 -14.375 1 63.11 ? C18 EUI 503 A 1 HETATM 3 C C15 EUI . . . D 4 33.02 30.561 -14.307 1 60.7 ? C15 EUI 503 A 1 HETATM 4 C C14 EUI . . . D 4 33.375 31.531 -13.363 1 58.31 ? C14 EUI 503 A 1 HETATM 5 C C13 EUI . . . D 4 34.689 31.955 -13.191 1 56.73 ? C13 EUI 503 A 1 HETATM 6 C C12 EUI . . . D 4 35.664 31.43 -14.008 1 58.77 ? C12 EUI 503 A 1 HETATM 7 F F17 EUI . . . D 4 36.93 31.879 -13.903 1 61.96 ? F17 EUI 503 A 1 HETATM 8 C C11 EUI . . . D 4 35.322 30.505 -14.993 1 58.76 ? C11 EUI 503 A 1 HETATM 9 F F16 EUI . . . D 4 36.324 30.044 -15.748 1 59.56 ? F16 EUI 503 A 1 HETATM 10 C C10 EUI . . . D 4 34.015 30.008 -15.124 1 59.55 ? C10 EUI 503 A 1 HETATM 11 N N9 EUI . . . D 4 33.674 29.082 -16.071 1 63.15 ? N9 EUI 503 A 1 HETATM 12 C C5 EUI . . . D 4 34.323 27.911 -16.423 1 69.31 ? C5 EUI 503 A 1 HETATM 13 C C4 EUI . . . D 4 35.465 27.433 -15.758 1 68.82 ? C4 EUI 503 A 1 HETATM 14 C C3 EUI . . . D 4 36.125 26.3 -16.191 1 70.61 ? C3 EUI 503 A 1 HETATM 15 C C2 EUI . . . D 4 35.628 25.573 -17.281 1 72.61 ? C2 EUI 503 A 1 HETATM 16 I I8 EUI . . . D 4 36.599 23.796 -17.872 1 67.78 ? I8 EUI 503 A 1 HETATM 17 C C6 EUI . . . D 4 33.834 27.187 -17.519 1 70.74 ? C6 EUI 503 A 1 HETATM 18 F F7 EUI . . . D 4 32.719 27.598 -18.155 1 69.56 ? F7 EUI 503 A 1 HETATM 19 C C1 EUI . . . D 4 34.472 26.016 -17.934 1 72.19 ? C1 EUI 503 A 1 HETATM 20 N N19 EUI . . . D 4 30.718 30.371 -13.274 1 64.41 ? N19 EUI 503 A 1 HETATM 21 C C23 EUI . . . D 4 30.947 29.901 -11.881 1 64.5 ? C23 EUI 503 A 1 HETATM 22 C C22 EUI . . . D 4 29.47 29.676 -11.683 1 67.91 ? C22 EUI 503 A 1 HETATM 23 C C21 EUI . . . D 4 29.309 29.903 -13.167 1 66.36 ? C21 EUI 503 A 1 HETATM 24 O O24 EUI . . . D 4 29.224 28.319 -11.327 1 66.04 ? O24 EUI 503 A 1 HETATM 25 C C25 EUI . . . D 4 28.738 30.708 -10.795 1 73.46 ? C25 EUI 503 A 1 HETATM 26 C C30 EUI . . . D 4 29.073 32.203 -11.066 1 70.55 ? C30 EUI 503 A 1 HETATM 27 C C29 EUI . . . D 4 28.298 33.132 -10.133 1 69.65 ? C29 EUI 503 A 1 HETATM 28 C C28 EUI . . . D 4 28.395 32.734 -8.65 1 70.13 ? C28 EUI 503 A 1 HETATM 29 C C27 EUI . . . D 4 28.147 31.238 -8.406 1 70.07 ? C27 EUI 503 A 1 HETATM 30 N N26 EUI . . . D 4 28.9 30.427 -9.355 1 73.31 ? N26 EUI 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #