data_4LN4 # _model_server_result.job_id WvBoRjXzXL4aEVtBYjaHBA _model_server_result.datetime_utc '2024-10-17 12:34:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ln4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":500}' # _entry.id 4LN4 # _exptl.entry_id 4LN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LN4 _cell.length_a 154.006 _cell.length_b 153.959 _cell.length_c 153.519 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA hexameric 6 author_and_software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 PISA dimeric 2 software_defined_assembly 7 PISA dimeric 2 software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U 1 1 A,B,M,P,Q 2 1 C,D,N,R,S 3 1 E,F,O,T,U 4 1 G,H,V,W 5 1 I,J,X,Y 5 2 K,L,Z,AA 5 3 G,H,V,W 6 1 I,J,X,Y 7 1 K,L,Z,AA 8 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 154.006 76.9795 76.7595 3 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 77.003 76.9795 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n M NAG 1 M 1 NAG A 800 NAG 3 n M NAG 2 M 2 NAG A 801 NAG 3 n M BMA 3 M 3 BMA A 802 MAN 3 n N NAG 1 N 1 NAG C 800 NAG 3 n N NAG 2 N 2 NAG C 801 NAG 3 n N BMA 3 N 3 BMA C 802 MAN 3 n O NAG 1 O 1 NAG E 800 NAG 3 n O NAG 2 O 2 NAG E 801 NAG 3 n O BMA 3 O 3 BMA E 802 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 4 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 46 A CYS 42 1_555 A SG CYS 272 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 58 A CYS 54 1_555 A SG CYS 70 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 91 A CYS 87 1_555 A SG CYS 133 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 276 A CYS 272 1_555 A SG CYS 300 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf7 C SG CYS 8 C CYS 4 1_555 D SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf8 C SG CYS 46 C CYS 42 1_555 C SG CYS 272 C CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 C SG CYS 58 C CYS 54 1_555 C SG CYS 70 C CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf10 C SG CYS 91 C CYS 87 1_555 C SG CYS 133 C CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf11 C SG CYS 276 C CYS 272 1_555 C SG CYS 300 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf12 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf13 E SG CYS 8 E CYS 4 1_555 F SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf14 E SG CYS 46 E CYS 42 1_555 E SG CYS 272 E CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf15 E SG CYS 58 E CYS 54 1_555 E SG CYS 70 E CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf16 E SG CYS 91 E CYS 87 1_555 E SG CYS 133 E CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf17 E SG CYS 276 E CYS 272 1_555 E SG CYS 300 E CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf18 F SG CYS 144 F CYS 144 1_555 F SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf19 G SG CYS 8 G CYS 4 1_555 H SG CYS 137 H CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf20 G SG CYS 46 G CYS 42 1_555 G SG CYS 272 G CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf21 G SG CYS 58 G CYS 54 1_555 G SG CYS 70 G CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf22 G SG CYS 91 G CYS 87 1_555 G SG CYS 133 G CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf23 G SG CYS 276 G CYS 272 1_555 G SG CYS 300 G CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf24 H SG CYS 144 H CYS 144 1_555 H SG CYS 148 H CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf25 I SG CYS 8 I CYS 4 1_555 J SG CYS 137 J CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf26 I SG CYS 46 I CYS 42 1_555 I SG CYS 272 I CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf27 I SG CYS 58 I CYS 54 1_555 I SG CYS 70 I CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf28 I SG CYS 91 I CYS 87 1_555 I SG CYS 133 I CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf29 I SG CYS 276 I CYS 272 1_555 I SG CYS 300 I CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf30 J SG CYS 144 J CYS 144 1_555 J SG CYS 148 J CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf31 K SG CYS 8 K CYS 4 1_555 L SG CYS 137 L CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf32 K SG CYS 46 K CYS 42 1_555 K SG CYS 272 K CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf33 K SG CYS 58 K CYS 54 1_555 K SG CYS 70 K CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf34 K SG CYS 91 K CYS 87 1_555 K SG CYS 133 K CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf35 K SG CYS 276 K CYS 272 1_555 K SG CYS 300 K CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf36 L SG CYS 144 L CYS 144 1_555 L SG CYS 148 L CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? covale ? covale1 A ND2 ASN 32 A ASN 28 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 235 A ASN 231 1_555 P C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 B ND2 ASN 82 B ASN 82 1_555 Q C1 NAG . B NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale4 C ND2 ASN 32 C ASN 28 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C ND2 ASN 235 C ASN 231 1_555 R C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale6 D ND2 ASN 82 D ASN 82 1_555 S C1 NAG . D NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale7 E ND2 ASN 32 E ASN 28 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale8 E ND2 ASN 235 E ASN 231 1_555 T C1 NAG . E NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale9 F ND2 ASN 82 F ASN 82 1_555 U C1 NAG . F NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale10 G ND2 ASN 32 G ASN 28 1_555 V C1 NAG . G NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 H ND2 ASN 82 H ASN 82 1_555 W C1 NAG . H NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale12 I ND2 ASN 32 I ASN 28 1_555 X C1 NAG . I NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 J ND2 ASN 82 J ASN 82 1_555 Y C1 NAG . J NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale14 K ND2 ASN 32 K ASN 28 1_555 Z C1 NAG . K NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 L ND2 ASN 82 L ASN 82 1_555 AA C1 NAG . L NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale16 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale18 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale19 N O4 NAG . N NAG 2 1_555 N C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale20 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale21 O O4 NAG . O NAG 2 1_555 O C1 BMA . O BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4LN4 _atom_sites.fract_transf_matrix[1][1] 0.006493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 4 NAG A 1 404 900 NAG NAG . Q 4 NAG B 1 500 500 NAG NAG . R 4 NAG C 1 404 900 NAG NAG . S 4 NAG D 1 500 500 NAG NAG . T 4 NAG E 1 404 900 NAG NAG . U 4 NAG F 1 500 500 NAG NAG . V 4 NAG G 1 800 800 NAG NAG . W 4 NAG H 1 500 500 NAG NAG . X 4 NAG I 1 800 800 NAG NAG . Y 4 NAG J 1 500 500 NAG NAG . Z 4 NAG K 1 800 800 NAG NAG . AA 4 NAG L 1 500 500 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . AA 4 25.955 43.048 -26.901 1 109.12 ? C1 NAG 500 L 1 HETATM 2 C C2 NAG . . . AA 4 26.137 44.385 -27.679 1 116.97 ? C2 NAG 500 L 1 HETATM 3 C C3 NAG . . . AA 4 26.521 45.579 -26.784 1 125.13 ? C3 NAG 500 L 1 HETATM 4 C C4 NAG . . . AA 4 25.474 45.746 -25.692 1 123.78 ? C4 NAG 500 L 1 HETATM 5 C C5 NAG . . . AA 4 25.353 44.414 -24.931 1 122.46 ? C5 NAG 500 L 1 HETATM 6 C C6 NAG . . . AA 4 24.309 44.637 -23.828 1 126.04 ? C6 NAG 500 L 1 HETATM 7 C C7 NAG . . . AA 4 26.82 44.285 -30.038 1 111.04 ? C7 NAG 500 L 1 HETATM 8 C C8 NAG . . . AA 4 27.968 44.199 -31.019 1 108.63 ? C8 NAG 500 L 1 HETATM 9 N N2 NAG . . . AA 4 27.134 44.305 -28.737 1 111.11 ? N2 NAG 500 L 1 HETATM 10 O O3 NAG . . . AA 4 26.655 46.793 -27.504 1 120.47 ? O3 NAG 500 L 1 HETATM 11 O O4 NAG . . . AA 4 25.795 46.846 -24.846 1 113.68 ? O4 NAG 500 L 1 HETATM 12 O O5 NAG . . . AA 4 25.066 43.289 -25.796 1 110.15 ? O5 NAG 500 L 1 HETATM 13 O O6 NAG . . . AA 4 24.017 43.478 -23.079 1 128.41 ? O6 NAG 500 L 1 HETATM 14 O O7 NAG . . . AA 4 25.656 44.323 -30.447 1 106.08 ? O7 NAG 500 L 1 # _model_server_stats.io_time_ms 192 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 95 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #