data_4LN5 # _model_server_result.job_id cPrK5k3XGVAXVg78gOi6KA _model_server_result.datetime_utc '2024-11-05 10:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ln5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4LN5 # _exptl.entry_id 4LN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LN5 _cell.length_a 96.098 _cell.length_b 97.34 _cell.length_c 58.115 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4LN5 _atom_sites.fract_transf_matrix[1][1] 0.010406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 1 CL CL . C 2 CL A 1 402 1 CL CL . D 3 GOL A 1 403 1 GOL GOL . E 4 HOH A 1 501 4 HOH HOH . E 4 HOH A 2 502 5 HOH HOH . E 4 HOH A 3 503 6 HOH HOH . E 4 HOH A 4 504 7 HOH HOH . E 4 HOH A 5 505 8 HOH HOH . E 4 HOH A 6 506 9 HOH HOH . E 4 HOH A 7 507 10 HOH HOH . E 4 HOH A 8 508 11 HOH HOH . E 4 HOH A 9 509 13 HOH HOH . E 4 HOH A 10 510 14 HOH HOH . E 4 HOH A 11 511 15 HOH HOH . E 4 HOH A 12 512 17 HOH HOH . E 4 HOH A 13 513 18 HOH HOH . E 4 HOH A 14 514 19 HOH HOH . E 4 HOH A 15 515 20 HOH HOH . E 4 HOH A 16 516 21 HOH HOH . E 4 HOH A 17 517 22 HOH HOH . E 4 HOH A 18 518 23 HOH HOH . E 4 HOH A 19 519 24 HOH HOH . E 4 HOH A 20 520 25 HOH HOH . E 4 HOH A 21 521 26 HOH HOH . E 4 HOH A 22 522 27 HOH HOH . E 4 HOH A 23 523 28 HOH HOH . E 4 HOH A 24 524 29 HOH HOH . E 4 HOH A 25 525 30 HOH HOH . E 4 HOH A 26 526 31 HOH HOH . E 4 HOH A 27 527 32 HOH HOH . E 4 HOH A 28 528 33 HOH HOH . E 4 HOH A 29 529 34 HOH HOH . E 4 HOH A 30 530 35 HOH HOH . E 4 HOH A 31 531 36 HOH HOH . E 4 HOH A 32 532 37 HOH HOH . E 4 HOH A 33 533 38 HOH HOH . E 4 HOH A 34 534 39 HOH HOH . E 4 HOH A 35 535 40 HOH HOH . E 4 HOH A 36 536 41 HOH HOH . E 4 HOH A 37 537 42 HOH HOH . E 4 HOH A 38 538 43 HOH HOH . E 4 HOH A 39 539 44 HOH HOH . E 4 HOH A 40 540 45 HOH HOH . E 4 HOH A 41 541 46 HOH HOH . E 4 HOH A 42 542 47 HOH HOH . E 4 HOH A 43 543 48 HOH HOH . E 4 HOH A 44 544 50 HOH HOH . E 4 HOH A 45 545 51 HOH HOH . E 4 HOH A 46 546 52 HOH HOH . E 4 HOH A 47 547 53 HOH HOH . E 4 HOH A 48 548 54 HOH HOH . E 4 HOH A 49 549 55 HOH HOH . E 4 HOH A 50 550 56 HOH HOH . E 4 HOH A 51 551 57 HOH HOH . E 4 HOH A 52 552 58 HOH HOH . E 4 HOH A 53 553 59 HOH HOH . E 4 HOH A 54 554 60 HOH HOH . E 4 HOH A 55 555 61 HOH HOH . E 4 HOH A 56 556 62 HOH HOH . E 4 HOH A 57 557 63 HOH HOH . E 4 HOH A 58 558 64 HOH HOH . E 4 HOH A 59 559 65 HOH HOH . E 4 HOH A 60 560 66 HOH HOH . E 4 HOH A 61 561 67 HOH HOH . E 4 HOH A 62 562 68 HOH HOH . E 4 HOH A 63 563 69 HOH HOH . E 4 HOH A 64 564 70 HOH HOH . E 4 HOH A 65 565 71 HOH HOH . E 4 HOH A 66 566 72 HOH HOH . E 4 HOH A 67 567 73 HOH HOH . E 4 HOH A 68 568 74 HOH HOH . E 4 HOH A 69 569 75 HOH HOH . E 4 HOH A 70 570 76 HOH HOH . E 4 HOH A 71 571 77 HOH HOH . E 4 HOH A 72 572 79 HOH HOH . E 4 HOH A 73 573 80 HOH HOH . E 4 HOH A 74 574 81 HOH HOH . E 4 HOH A 75 575 83 HOH HOH . E 4 HOH A 76 576 84 HOH HOH . E 4 HOH A 77 577 85 HOH HOH . E 4 HOH A 78 578 86 HOH HOH . E 4 HOH A 79 579 87 HOH HOH . E 4 HOH A 80 580 88 HOH HOH . E 4 HOH A 81 581 89 HOH HOH . E 4 HOH A 82 582 90 HOH HOH . E 4 HOH A 83 583 91 HOH HOH . E 4 HOH A 84 584 92 HOH HOH . E 4 HOH A 85 585 93 HOH HOH . E 4 HOH A 86 586 94 HOH HOH . E 4 HOH A 87 587 95 HOH HOH . E 4 HOH A 88 588 96 HOH HOH . E 4 HOH A 89 589 97 HOH HOH . E 4 HOH A 90 590 98 HOH HOH . E 4 HOH A 91 591 99 HOH HOH . E 4 HOH A 92 592 100 HOH HOH . E 4 HOH A 93 593 102 HOH HOH . E 4 HOH A 94 594 103 HOH HOH . E 4 HOH A 95 595 104 HOH HOH . E 4 HOH A 96 596 105 HOH HOH . E 4 HOH A 97 597 106 HOH HOH . E 4 HOH A 98 598 107 HOH HOH . E 4 HOH A 99 599 108 HOH HOH . E 4 HOH A 100 600 109 HOH HOH . E 4 HOH A 101 601 110 HOH HOH . E 4 HOH A 102 602 111 HOH HOH . E 4 HOH A 103 603 112 HOH HOH . E 4 HOH A 104 604 113 HOH HOH . E 4 HOH A 105 605 114 HOH HOH . E 4 HOH A 106 606 115 HOH HOH . E 4 HOH A 107 607 116 HOH HOH . E 4 HOH A 108 608 117 HOH HOH . E 4 HOH A 109 609 118 HOH HOH . E 4 HOH A 110 610 119 HOH HOH . E 4 HOH A 111 611 120 HOH HOH . E 4 HOH A 112 612 121 HOH HOH . E 4 HOH A 113 613 122 HOH HOH . E 4 HOH A 114 614 123 HOH HOH . E 4 HOH A 115 615 124 HOH HOH . E 4 HOH A 116 616 125 HOH HOH . E 4 HOH A 117 617 126 HOH HOH . E 4 HOH A 118 618 127 HOH HOH . E 4 HOH A 119 619 129 HOH HOH . E 4 HOH A 120 620 130 HOH HOH . E 4 HOH A 121 621 131 HOH HOH . E 4 HOH A 122 622 132 HOH HOH . E 4 HOH A 123 623 133 HOH HOH . E 4 HOH A 124 624 134 HOH HOH . E 4 HOH A 125 625 135 HOH HOH . E 4 HOH A 126 626 136 HOH HOH . E 4 HOH A 127 627 137 HOH HOH . E 4 HOH A 128 628 138 HOH HOH . E 4 HOH A 129 629 139 HOH HOH . E 4 HOH A 130 630 140 HOH HOH . E 4 HOH A 131 631 141 HOH HOH . E 4 HOH A 132 632 142 HOH HOH . E 4 HOH A 133 633 143 HOH HOH . E 4 HOH A 134 634 144 HOH HOH . E 4 HOH A 135 635 145 HOH HOH . E 4 HOH A 136 636 146 HOH HOH . E 4 HOH A 137 637 147 HOH HOH . E 4 HOH A 138 638 148 HOH HOH . E 4 HOH A 139 639 149 HOH HOH . E 4 HOH A 140 640 150 HOH HOH . E 4 HOH A 141 641 151 HOH HOH . E 4 HOH A 142 642 152 HOH HOH . E 4 HOH A 143 643 153 HOH HOH . E 4 HOH A 144 644 154 HOH HOH . E 4 HOH A 145 645 155 HOH HOH . E 4 HOH A 146 646 156 HOH HOH . E 4 HOH A 147 647 157 HOH HOH . E 4 HOH A 148 648 158 HOH HOH . E 4 HOH A 149 649 159 HOH HOH . E 4 HOH A 150 650 160 HOH HOH . E 4 HOH A 151 651 161 HOH HOH . E 4 HOH A 152 652 162 HOH HOH . E 4 HOH A 153 653 163 HOH HOH . E 4 HOH A 154 654 164 HOH HOH . E 4 HOH A 155 655 165 HOH HOH . E 4 HOH A 156 656 166 HOH HOH . E 4 HOH A 157 657 167 HOH HOH . E 4 HOH A 158 658 169 HOH HOH . E 4 HOH A 159 659 170 HOH HOH . E 4 HOH A 160 660 171 HOH HOH . E 4 HOH A 161 661 172 HOH HOH . E 4 HOH A 162 662 173 HOH HOH . E 4 HOH A 163 663 174 HOH HOH . E 4 HOH A 164 664 175 HOH HOH . E 4 HOH A 165 665 176 HOH HOH . E 4 HOH A 166 666 177 HOH HOH . E 4 HOH A 167 667 178 HOH HOH . E 4 HOH A 168 668 179 HOH HOH . E 4 HOH A 169 669 180 HOH HOH . E 4 HOH A 170 670 181 HOH HOH . E 4 HOH A 171 671 182 HOH HOH . E 4 HOH A 172 672 183 HOH HOH . E 4 HOH A 173 673 184 HOH HOH . E 4 HOH A 174 674 185 HOH HOH . E 4 HOH A 175 675 186 HOH HOH . E 4 HOH A 176 676 187 HOH HOH . E 4 HOH A 177 677 188 HOH HOH . E 4 HOH A 178 678 189 HOH HOH . E 4 HOH A 179 679 190 HOH HOH . E 4 HOH A 180 680 191 HOH HOH . E 4 HOH A 181 681 192 HOH HOH . E 4 HOH A 182 682 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 23.231 33.467 5.568 1 25.89 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 21.861 33.154 5.474 1 26.44 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 23.688 33.179 6.993 1 23.14 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 23.386 31.849 7.378 1 13.64 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 25.186 33.419 7.099 1 18.7 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 25.496 33.311 8.465 1 24.9 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #