data_4LN7 # _model_server_result.job_id 2okqDfx3so4YafFpEAQ9Yw _model_server_result.datetime_utc '2024-11-23 19:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ln7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 4LN7 # _exptl.entry_id 4LN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LN7 _cell.length_a 89.658 _cell.length_b 101.049 _cell.length_c 66.616 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 46 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 A OE1 GLU 85 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 A OE2 GLU 85 A GLU 80 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 A OD2 ASP 113 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 A OD1 ASP 113 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 A OE2 GLU 124 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc7 A O ILE 125 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc8 B MN MN . A MN 301 1_555 G O04 1ZQ . A 1ZQ 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc9 B MN MN . A MN 301 1_555 G O01 1ZQ . A 1ZQ 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc10 C MN MN . A MN 302 1_555 G O01 1ZQ . A 1ZQ 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc11 C MN MN . A MN 302 1_555 J O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc12 C MN MN . A MN 302 1_555 J O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc13 C MN MN . A MN 302 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc14 H MG MG . A MG 307 1_555 J O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc15 H MG MG . A MG 307 1_555 J O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 118 n n C1 C2 EDO sing 119 n n C1 H11 EDO sing 120 n n C1 H12 EDO sing 121 n n O1 HO1 EDO sing 122 n n C2 O2 EDO sing 123 n n C2 H21 EDO sing 124 n n C2 H22 EDO sing 125 n n O2 HO2 EDO sing 126 n n # _atom_sites.entry_id 4LN7 _atom_sites.fract_transf_matrix[1][1] 0.011153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 EDO A 1 303 4 EDO EDO . E 4 SO4 A 1 304 2 SO4 SO4 . F 4 SO4 A 1 305 3 SO4 SO4 . G 5 1ZQ A 1 306 1 1ZQ A8B . H 6 MG A 1 307 1 MG MG . I 3 EDO A 1 308 1 EDO EDO . J 7 HOH A 1 401 1 HOH HOH . J 7 HOH A 2 402 2 HOH HOH . J 7 HOH A 3 403 3 HOH HOH . J 7 HOH A 4 404 4 HOH HOH . J 7 HOH A 5 405 5 HOH HOH . J 7 HOH A 6 406 6 HOH HOH . J 7 HOH A 7 407 7 HOH HOH . J 7 HOH A 8 408 8 HOH HOH . J 7 HOH A 9 409 9 HOH HOH . J 7 HOH A 10 410 10 HOH HOH . J 7 HOH A 11 411 11 HOH HOH . J 7 HOH A 12 412 12 HOH HOH . J 7 HOH A 13 413 13 HOH HOH . J 7 HOH A 14 414 14 HOH HOH . J 7 HOH A 15 415 15 HOH HOH . J 7 HOH A 16 416 16 HOH HOH . J 7 HOH A 17 417 17 HOH HOH . J 7 HOH A 18 418 18 HOH HOH . J 7 HOH A 19 419 19 HOH HOH . J 7 HOH A 20 420 20 HOH HOH . J 7 HOH A 21 421 21 HOH HOH . J 7 HOH A 22 422 22 HOH HOH . J 7 HOH A 23 423 23 HOH HOH . J 7 HOH A 24 424 24 HOH HOH . J 7 HOH A 25 425 25 HOH HOH . J 7 HOH A 26 426 26 HOH HOH . J 7 HOH A 27 427 27 HOH HOH . J 7 HOH A 28 428 28 HOH HOH . J 7 HOH A 29 429 29 HOH HOH . J 7 HOH A 30 430 30 HOH HOH . J 7 HOH A 31 431 31 HOH HOH . J 7 HOH A 32 432 32 HOH HOH . J 7 HOH A 33 433 33 HOH HOH . J 7 HOH A 34 434 34 HOH HOH . J 7 HOH A 35 435 35 HOH HOH . J 7 HOH A 36 436 36 HOH HOH . J 7 HOH A 37 437 37 HOH HOH . J 7 HOH A 38 438 38 HOH HOH . J 7 HOH A 39 439 39 HOH HOH . J 7 HOH A 40 440 40 HOH HOH . J 7 HOH A 41 441 41 HOH HOH . J 7 HOH A 42 442 42 HOH HOH . J 7 HOH A 43 443 43 HOH HOH . J 7 HOH A 44 444 44 HOH HOH . J 7 HOH A 45 445 45 HOH HOH . J 7 HOH A 46 446 46 HOH HOH . J 7 HOH A 47 447 47 HOH HOH . J 7 HOH A 48 448 48 HOH HOH . J 7 HOH A 49 449 49 HOH HOH . J 7 HOH A 50 450 50 HOH HOH . J 7 HOH A 51 451 51 HOH HOH . J 7 HOH A 52 452 52 HOH HOH . J 7 HOH A 53 453 53 HOH HOH . J 7 HOH A 54 454 54 HOH HOH . J 7 HOH A 55 455 55 HOH HOH . J 7 HOH A 56 456 56 HOH HOH . J 7 HOH A 57 457 57 HOH HOH . J 7 HOH A 58 458 58 HOH HOH . J 7 HOH A 59 459 59 HOH HOH . J 7 HOH A 60 460 60 HOH HOH . J 7 HOH A 61 461 61 HOH HOH . J 7 HOH A 62 462 62 HOH HOH . J 7 HOH A 63 463 63 HOH HOH . J 7 HOH A 64 464 64 HOH HOH . J 7 HOH A 65 465 65 HOH HOH . J 7 HOH A 66 466 66 HOH HOH . J 7 HOH A 67 467 67 HOH HOH . J 7 HOH A 68 468 68 HOH HOH . J 7 HOH A 69 469 69 HOH HOH . J 7 HOH A 70 470 70 HOH HOH . J 7 HOH A 71 471 71 HOH HOH . J 7 HOH A 72 472 72 HOH HOH . J 7 HOH A 73 473 73 HOH HOH . J 7 HOH A 74 474 74 HOH HOH . J 7 HOH A 75 475 75 HOH HOH . J 7 HOH A 76 476 76 HOH HOH . J 7 HOH A 77 477 77 HOH HOH . J 7 HOH A 78 478 78 HOH HOH . J 7 HOH A 79 479 79 HOH HOH . J 7 HOH A 80 480 80 HOH HOH . J 7 HOH A 81 481 81 HOH HOH . J 7 HOH A 82 482 82 HOH HOH . J 7 HOH A 83 483 83 HOH HOH . J 7 HOH A 84 484 84 HOH HOH . J 7 HOH A 85 485 85 HOH HOH . J 7 HOH A 86 486 86 HOH HOH . J 7 HOH A 87 487 87 HOH HOH . J 7 HOH A 88 488 88 HOH HOH . J 7 HOH A 89 489 89 HOH HOH . J 7 HOH A 90 490 90 HOH HOH . J 7 HOH A 91 491 91 HOH HOH . J 7 HOH A 92 492 92 HOH HOH . J 7 HOH A 93 493 93 HOH HOH . J 7 HOH A 94 494 94 HOH HOH . J 7 HOH A 95 495 95 HOH HOH . J 7 HOH A 96 496 96 HOH HOH . J 7 HOH A 97 497 97 HOH HOH . J 7 HOH A 98 498 98 HOH HOH . J 7 HOH A 99 499 99 HOH HOH . J 7 HOH A 100 500 100 HOH HOH . J 7 HOH A 101 501 101 HOH HOH . J 7 HOH A 102 502 102 HOH HOH . J 7 HOH A 103 503 103 HOH HOH . J 7 HOH A 104 504 104 HOH HOH . J 7 HOH A 105 505 105 HOH HOH . J 7 HOH A 106 506 106 HOH HOH . J 7 HOH A 107 507 107 HOH HOH . J 7 HOH A 108 508 108 HOH HOH . J 7 HOH A 109 509 109 HOH HOH . J 7 HOH A 110 510 110 HOH HOH . J 7 HOH A 111 511 111 HOH HOH . J 7 HOH A 112 512 112 HOH HOH . J 7 HOH A 113 513 113 HOH HOH . J 7 HOH A 114 514 114 HOH HOH . J 7 HOH A 115 515 115 HOH HOH . J 7 HOH A 116 516 116 HOH HOH . J 7 HOH A 117 517 117 HOH HOH . J 7 HOH A 118 518 118 HOH HOH . J 7 HOH A 119 519 119 HOH HOH . J 7 HOH A 120 520 120 HOH HOH . J 7 HOH A 121 521 121 HOH HOH . J 7 HOH A 122 522 122 HOH HOH . J 7 HOH A 123 523 123 HOH HOH . J 7 HOH A 124 524 124 HOH HOH . J 7 HOH A 125 525 125 HOH HOH . J 7 HOH A 126 526 126 HOH HOH . J 7 HOH A 127 527 127 HOH HOH . J 7 HOH A 128 528 128 HOH HOH . J 7 HOH A 129 529 129 HOH HOH . J 7 HOH A 130 530 130 HOH HOH . J 7 HOH A 131 531 131 HOH HOH . J 7 HOH A 132 532 132 HOH HOH . J 7 HOH A 133 533 133 HOH HOH . J 7 HOH A 134 534 134 HOH HOH . J 7 HOH A 135 535 135 HOH HOH . J 7 HOH A 136 536 136 HOH HOH . J 7 HOH A 137 537 137 HOH HOH . J 7 HOH A 138 538 138 HOH HOH . J 7 HOH A 139 539 139 HOH HOH . J 7 HOH A 140 540 140 HOH HOH . J 7 HOH A 141 541 141 HOH HOH . J 7 HOH A 142 542 142 HOH HOH . J 7 HOH A 143 543 143 HOH HOH . J 7 HOH A 144 544 144 HOH HOH . J 7 HOH A 145 545 145 HOH HOH . J 7 HOH A 146 546 146 HOH HOH . J 7 HOH A 147 547 147 HOH HOH . J 7 HOH A 148 548 148 HOH HOH . J 7 HOH A 149 549 149 HOH HOH . J 7 HOH A 150 550 150 HOH HOH . J 7 HOH A 151 551 151 HOH HOH . J 7 HOH A 152 552 152 HOH HOH . J 7 HOH A 153 553 153 HOH HOH . J 7 HOH A 154 554 154 HOH HOH . J 7 HOH A 155 555 155 HOH HOH . J 7 HOH A 156 556 156 HOH HOH . J 7 HOH A 157 557 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 15.361 28.88 -14.618 1 50.78 ? C1 EDO 308 A 1 HETATM 2 O O1 EDO . . . I 3 16.494 28 -14.594 1 48.38 ? O1 EDO 308 A 1 HETATM 3 C C2 EDO . . . I 3 14.926 29.102 -16.058 1 55.31 ? C2 EDO 308 A 1 HETATM 4 O O2 EDO . . . I 3 16.081 29.152 -16.906 1 62.5 ? O2 EDO 308 A 1 HETATM 5 H H11 EDO . . . I 3 14.54 28.442 -14.047 1 60.94 ? H11 EDO 308 A 1 HETATM 6 H H12 EDO . . . I 3 15.625 29.835 -14.16 1 60.94 ? H12 EDO 308 A 1 HETATM 7 H HO1 EDO . . . I 3 16.772 27.858 -13.679 1 58.05 ? HO1 EDO 308 A 1 HETATM 8 H H21 EDO . . . I 3 14.27 28.289 -16.375 1 66.38 ? H21 EDO 308 A 1 HETATM 9 H H22 EDO . . . I 3 14.37 30.039 -16.136 1 66.38 ? H22 EDO 308 A 1 HETATM 10 H HO2 EDO . . . I 3 15.803 29.293 -17.821 1 75 ? HO2 EDO 308 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #